BAC Information

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BAC

Clone NameB6Ng01-188I06
Chromosome3 (Build37)
Map Location 144,856,383 - 144,985,279
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188I06.bB6Ng01-188I06.g
ACCGA012796GA012797
length1,189643
definitionB6Ng01-188I06.b B6Ng01-188I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,856,383 - 144,857,564)(144,984,637 - 144,985,279)
sequence
gaattcttttagtaaaagtgtttctattgtgttctcacttttatagtcat
agccatacctaatattcttggttacttacatatttagacacactgggccc
tctgtgtggaaaagcataaaagtaggatttttcttctactttgtcatcag
ctttagagttgacttaggttttgtgaagtattaataatggtgttattgaa
gatgtcattttaaataacagtgttttattccagctccatggctcttccta
tgttttccttccaggttctttctcattctcttaatttttaaatgttatag
tctctgccatcttagcttataaaaacaggtataaaataaacagttttgtg
tctctctgatgtccaaattcttccagttttcatacaaactgcatttgccc
catgtgctaagtctcttagtgatgagcttatgagatcacgttgtagctat
tcagtcacatacctgcattcatggaaactgaacacaaacatcaggaaagt
ataacctcaaaaaaagcccaagaactattcaaaaagtaagacatactaaa
gcatttttctggcagtaatccttttcatttggcctttcctcttctctttc
caactttaaaaaaaaaatagatcaagaaatcagaaagcaactatcttcaa
atccacgttgaatccacatatggtctgaaaatatttgattgccagccatg
tgtaagaaaatgcagatgcttagcccctttttgttgacagcatcaccatt
attaactctgtttgatgataacacagcacacagtactctgggattgatac
cttctcctctttcagagctcaaggttccagagatagctcatgacccattg
gcccccagtaaccattaggaggacctcattgctccctgttaaatctggtt
ctatgtctcacctccaaggtctgtgaactaatggcctgtaaacattgagt
gagtacagggaactggtctttaactagcgctgatgtccgtgctcgtaagt
agatctgatgtccagaatgattagaacactttctgaaggtaagtcatgac
atttatactgtactccgtccaaattagagtactgttcaacttctagtcct
caaactgcagattgatacgccatgtctcgactgcacggatgcgatcgatt
cggatcaatagcctatgagctacctcagaaaaagtagct
gaattcagtgatgacattgaagatatgtctaataggaataaaactaagga
gaaaatactacagtccatggcgttgtaatcttaagaaagtaaaggagaca
gagattaatgaatgaatggttgctgtagactccagggtaatgggtttaat
cctatttcacaaacacagcagtgcagccatgagccaacacaatggcttta
ggagaaacttgtaccaattaaagtgtgggatttttttttcaaagagaaat
gatgtgttggttgtggacagacaggattaaatttagggagagagaatttg
caaagctgccactttcctggtagagaactgaccagaggacatgaagttag
gaatgcacctgaaataagtagtctcatgaagcagaccgtcctctccttac
agggggcaggttgggcaaatagggggccctgggcactagagaagaccatg
tatcctgagtcaccttactgggattaacagcctcagggtgaagaggggat
ggaatcagcacagagaagactgcaacagaaacaatggttccaatgtctcc
tcacagaaggtggagggatgatgtgacaggctgatgtgctggagggcagg
gtataggcaaagactggaggggaagagggaggggatgagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144856383_144857564
seq2: B6Ng01-188I06.b_44_1232

seq1  GAATTCTTTTAGTAAAAGT-TTTCTATTGTGTTCTCACTTTTATAGTCAT  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGTAAAAGTGTTTCTATTGTGTTCTCACTTTTATAGTCAT  50

seq1  AGCCATACCTAATATTCTTGGTTACTTACATATTTAGACACACTGGGCCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATACCTAATATTCTTGGTTACTTACATATTTAGACACACTGGGCCC  100

seq1  TCTGTGTGGAAAAGCATAAAAGTAGGATTTTTCTTCTACTTTGTCATCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGAAAAGCATAAAAGTAGGATTTTTCTTCTACTTTGTCATCAG  150

seq1  CTTTAGAGTTGACTTAGGTTTTGTGAAGTATTAATAATGGTGTTATTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGTTGACTTAGGTTTTGTGAAGTATTAATAATGGTGTTATTGAA  200

seq1  GATGTCATTTTAAATAACAGTGTTTTATTCCAGCTCCATGGCTCTTCCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATTTTAAATAACAGTGTTTTATTCCAGCTCCATGGCTCTTCCTA  250

seq1  TGTTTTCCTTCCAGGTTCTTTCTCATTCTCTTAATTTTTAAATGTTATAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTTCCAGGTTCTTTCTCATTCTCTTAATTTTTAAATGTTATAG  300

seq1  TCTCTGCCATCTTAGCTTATAAAAACAGGTATAAAATAAACAGTTTTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCATCTTAGCTTATAAAAACAGGTATAAAATAAACAGTTTTGTG  350

seq1  TCTCTCTGATGTCCAAATTCTTCCAGTTTTCATACAAACTGCATTTGCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGATGTCCAAATTCTTCCAGTTTTCATACAAACTGCATTTGCCC  400

seq1  CATGTGCTAAGTCTCTTAGTGATGAGCTTATGAGATCACGTTGTAGCTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTAAGTCTCTTAGTGATGAGCTTATGAGATCACGTTGTAGCTAT  450

seq1  TCAGTCACATACCTGCATTCATGGAAACTGAACACAAACATCAGGAAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACATACCTGCATTCATGGAAACTGAACACAAACATCAGGAAAGT  500

seq1  ATAACCTCAAAAAAAGCCCAAGAACTATTCAAAAAGTAAGACATACTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCAAAAAAAGCCCAAGAACTATTCAAAAAGTAAGACATACTAAA  550

seq1  GCATTTTTCTGGCAGTAATCCTTTTCATTTGGCCTTTCCTCTTCTCTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTCTGGCAGTAATCCTTTTCATTTGGCCTTTCCTCTTCTCTTTC  600

seq1  CAACTTTAAAAAAAAAATAGATCAAGAAATCAGAAAGCAACTATCTTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTAAAAAAAAAATAGATCAAGAAATCAGAAAGCAACTATCTTCAA  650

seq1  ATCCACGTTGAATCCACATATGGTCTGAAAATATTTGATTGCCAGCCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACGTTGAATCCACATATGGTCTGAAAATATTTGATTGCCAGCCATG  700

seq1  TGTAAGAAAATGCAGATGCTTAGCCCCTTTTTGTTGACAGCATCACCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAAATGCAGATGCTTAGCCCCTTTTTGTTGACAGCATCACCATT  750

seq1  ATTAACTCTGTTTGATGATAACACAGCACACAGTACTCTGGGATTGATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCTGTTTGATGATAACACAGCACACAGTACTCTGGGATTGATAC  800

seq1  CTTCTCCTCTTTCAGAGCTCAAGGTTCCAGAGATAGCTCATGACCCATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTCTTTCAGAGCTCAAGGTTCCAGAGATAGCTCATGACCCATTG  850

seq1  GCCCCCAGTAACCATTAGGAGGACCTCATTGCTCCCTGTTAAATCTGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGTAACCATTAGGAGGACCTCATTGCTCCCTGTTAAATCTGGTT  900

seq1  CTATGTCTCACCTCC-AGGTCTGTGAACTAATGGTCTGTAAACATTGAGT  948
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  CTATGTCTCACCTCCAAGGTCTGTGAACTAATGGCCTGTAAACATTGAGT  950

seq1  GAGTACAAGGAACTGGTC-TTAATTAGCGCTGATGTCCGTGCTCTTAATT  997
      ||||||| |||||||||| |||| |||||||||||||||||||| ||| |
seq2  GAGTACAGGGAACTGGTCTTTAACTAGCGCTGATGTCCGTGCTCGTAAGT  1000

seq1  AGTTCTGATGTCCAG-ATGATTAGAACAC-TTCTGAAGG-AAGTCATGAC  1044
      || |||||||||||| ||||||||||||| ||||||||| ||||||||||
seq2  AGATCTGATGTCCAGAATGATTAGAACACTTTCTGAAGGTAAGTCATGAC  1050

seq1  -TTTAT-CTGT-CCCCCTCCCAAATAGATAAC--TTCAACTTCCTTGGTT  1089
       ||||| |||| | || ||| || ||||  ||  |||||||||  | || 
seq2  ATTTATACTGTACTCCGTCCAAATTAGAGTACTGTTCAACTTC--TAGTC  1098

seq1  CTCAAAAATGCAGA-TAATACCCCTTTTCTTAGTTTCACAGATTCTATTC  1138
      ||| ||| |||||| | |||| || | |||    | ||| ||| | | ||
seq2  CTC-AAACTGCAGATTGATACGCCATGTCTCGACTGCACGGATGCGA-TC  1146

seq1  TATTTGGACACAAGAGCTAATGAGCAACTCAAGAAAAAGTAGCT  1182
       ||| |||  ||| |||  |||||| ||   |||||||||||||
seq2  GATTCGGA-TCAATAGCCTATGAGCTACCTCAGAAAAAGTAGCT  1189

seq1: chr3_144984637_144985279
seq2: B6Ng01-188I06.g_62_704 (reverse)

seq1  CTCCCTCATCCCCTCCCTCTTCCCCTCCAGTCTTTGCCTATACCCTGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCATCCCCTCCCTCTTCCCCTCCAGTCTTTGCCTATACCCTGCCC  50

seq1  TCCAGCACATCAGCCTGTCACATCATCCCTCCACCTTCTGTGAGGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACATCAGCCTGTCACATCATCCCTCCACCTTCTGTGAGGAGACA  100

seq1  TTGGAACCATTGTTTCTGTTGCAGTCTTCTCTGTGCTGATTCCATCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACCATTGTTTCTGTTGCAGTCTTCTCTGTGCTGATTCCATCCCCT  150

seq1  CTTCACCCTGAGGCTGTTAATCCCAGTAAGGTGACTCAGGATACATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCTGAGGCTGTTAATCCCAGTAAGGTGACTCAGGATACATGGTC  200

seq1  TTCTCTAGTGCCCAGGGCCCCCTATTTGCCCAACCTGCCCCCTGTAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGTGCCCAGGGCCCCCTATTTGCCCAACCTGCCCCCTGTAAGGA  250

seq1  GAGGACGGTCTGCTTCATGAGACTACTTATTTCAGGTGCATTCCTAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGGTCTGCTTCATGAGACTACTTATTTCAGGTGCATTCCTAACTT  300

seq1  CATGTCCTCTGGTCAGTTCTCTACCAGGAAAGTGGCAGCTTTGCAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCTGGTCAGTTCTCTACCAGGAAAGTGGCAGCTTTGCAAATTC  350

seq1  TCTCTCCCTAAATTTAATCCTGTCTGTCCACAACCAACACATCATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTAAATTTAATCCTGTCTGTCCACAACCAACACATCATTTCTC  400

seq1  TTTGAAAAAAAAATCCCACACTTTAATTGGTACAAGTTTCTCCTAAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAAAAAATCCCACACTTTAATTGGTACAAGTTTCTCCTAAAGCC  450

seq1  ATTGTGTTGGCTCATGGCTGCACTGCTGTGTTTGTGAAATAGGATTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTTGGCTCATGGCTGCACTGCTGTGTTTGTGAAATAGGATTAAAC  500

seq1  CCATTACCCTGGAGTCTACAGCAACCATTCATTCATTAATCTCTGTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACCCTGGAGTCTACAGCAACCATTCATTCATTAATCTCTGTCTCC  550

seq1  TTTACTTTCTTAAGATTACAACGCCATGGACTGTAGTATTTTCTCCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCTTAAGATTACAACGCCATGGACTGTAGTATTTTCTCCTTAG  600

seq1  TTTTATTCCTATTAGACATATCTTCAATGTCATCACTGAATTC  643
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCTATTAGACATATCTTCAATGTCATCACTGAATTC  643