BAC Information

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BAC

Clone NameB6Ng01-191P08
Chromosome3 (Build37)
Map Location 117,031,477 - 117,211,069
singlet/doubletdoublet
Overlap geneD3Bwg0562e
Upstream geneCdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191P08.bB6Ng01-191P08.g
ACCGA015324GA015325
length1,1411,115
definitionB6Ng01-191P08.b B6Ng01-191P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,031,477 - 117,032,594)(117,209,981 - 117,211,069)
sequence
gaattctgcaagcaataagtatactgtagtcactcttgttaattaggcta
tatcctttatatataaatatttgtttttaattagtgtatctgtgcacctg
tgagcatttgtccctgcaaagtacagaagaaggtgtcagattttgagagc
tggagttacagggagctgtgagtggcctgatgtgggtgctaaagttctga
acctgggtcctctgcaagagcggtgtgtatatttaactcataagccatgt
ccccagtgcctaaggtcaattcttaacagggttcaccaaaggtcacttgt
catctacttgggggaaagttgaggaatgatttgagaaggacagggtatga
gaaatgcagtagaattaaaatgctactactttcattctctttgttttgcg
atcaactgaacttatttgggccatccatgtgatcatgggtttgaaactgt
tcattggattctggtggatgtacaactaaggcaacttcccctactgatcc
cccagtactaaagttcagtaatgtgaacaagaacttttagggaggagggg
aagttgacagggataggaaggacataaaagcaaatgaggaggtgagaata
gtcagtctgcataaagtacaatgtataaaattcacaaagaagtaatatag
taaaagccatttaaattttgtaatatgatgtatacaaccaattaaaaaat
aacttaaaactttctgagcatttttgggtaatttagcctctttttctcac
catggtctataactccaggcacagttgctaaaccctccagaatcctttgt
ctcattctctatgtagcactatcctgctaagagtgctaattaagcaaaga
agaagggaaggcaggctttgtcgtaataaccaaataatagctacagccag
ggaaacagtggggagctgccttattggtggttgatgttcaattatcgcca
atcaaaaccccactttaaatcttctgggaccaaatcataaatttacgaag
ccctcagccttatactttgtttgaagttccttgcttggctcatctttgtg
agtagttctccctacgatgcaattctagcactttacattttcctccaagg
tttgtctttcggactccccacaaatttcgttctgacctcag
gaattcagcacatcatccttcagattataaataccaagtagtgtcaagaa
tcttccagctcctgagttcctaggggcaactactctgtcacttagctgtt
ttgtcctgaaacaagtgctttagcctccacaaatatctgttgcctcagga
gtcactgaatcaagaaagcggttctgtgtgcactgacatgatgttcagac
tgtacaaaggaagtctggtagaatcaaacacctcatgggatgttgagact
gaatcgtgtctaaattacaaacaatttacttgaaactcggtgggtttttg
aaactgaaatcagccacctaaggattggtccagaagcatcaaggtgactg
tcaaatgatgcaagtgtacagtgatgctaaagggagagaattactttccc
acccacaaatagcttcagctcacagtctttctcccaaaccactctcctgt
aaggtaatgaggaacccgattctttacacggtgtgcggtcatctgctctg
aaagtgcattacagacagggtggtctagttcagaaatccaaatatgatgc
aaactagaaatgtttgtatagaaaatatgaaaggaaatgatactttatat
agtttctataaactttgagagatccaagtgttaaatgcaccgaggttgtg
tgtatgtgtgtgtttactaatgcatgtacgtggtgaccagagtgtgatat
gaactatttgttttccccataaagctccataatatcttttgatacaaggg
tcctcactggacctaacactttctcattgtctggactggctgggccagca
agagccaataatctgacagtctctaccttttcatagtttagtacgggaat
cggagatatacacaatcatgtggattcttgggaaatcttgaaatcaggtc
tttatgcttgtgtgacaggaacttttattgggttgaagccattcctctcc
tacccatgcaaaaatatattaatgggacaatatacatcgttttttaactt
gttcaaaacttcaaggaattgtattaacaaccagaggaagcatatatgaa
gccattgtaatagaacactctgattgttaggttcattcatttatagcata
tttccagtccacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117031477_117032594
seq2: B6Ng01-191P08.b_46_1186

seq1  GAATTCTGCAAGCAATAAGTATACTGTAGTCACTCTTGTTAATTAGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAAGCAATAAGTATACTGTAGTCACTCTTGTTAATTAGGCTA  50

seq1  TATCCTTTATATATAAATATTTGTTTTTAATTAGTGTATCTGTGCACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTATATATAAATATTTGTTTTTAATTAGTGTATCTGTGCACCTG  100

seq1  TGAGCATTTGTCCCTGCAAAGTACAGAAGAAGGTGTCAGATTTTGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTTGTCCCTGCAAAGTACAGAAGAAGGTGTCAGATTTTGAGAGC  150

seq1  TGGAGTTACAGGGAGCTGTGAGTGGCCTGATGTGGGTGCTAAAGTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTACAGGGAGCTGTGAGTGGCCTGATGTGGGTGCTAAAGTTCTGA  200

seq1  ACCTGGGTCCTCTGCAAGAGCGGTGTGTATATTTAACTCATAAGCCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTCCTCTGCAAGAGCGGTGTGTATATTTAACTCATAAGCCATGT  250

seq1  CCCCAGTGCCTAAGGTCAATTCTTAACAGGGTTCACCAAAGGTCACTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGCCTAAGGTCAATTCTTAACAGGGTTCACCAAAGGTCACTTGT  300

seq1  CATCTACTTGGGGGAAAGTTGAGGAATGATTTGAGAAGGACAGGGTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTTGGGGGAAAGTTGAGGAATGATTTGAGAAGGACAGGGTATGA  350

seq1  GAAATGCAGTAGAATTAAAATGCTACTACTTTCATTCTCTTTGTTTTGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAGTAGAATTAAAATGCTACTACTTTCATTCTCTTTGTTTTGCG  400

seq1  ATCAACTGAACTTATTTGGGCCATCCATGTGATCATGGGTTTGAAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTGAACTTATTTGGGCCATCCATGTGATCATGGGTTTGAAACTGT  450

seq1  TCATTGGATTCTGGTGGATGTACAACTAAGGCAACTTCCCCTACTGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGATTCTGGTGGATGTACAACTAAGGCAACTTCCCCTACTGATCC  500

seq1  CCCAGTACTAAAGTTCAGTAATGTGAACAAGAACTTTTAGGGAGGAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACTAAAGTTCAGTAATGTGAACAAGAACTTTTAGGGAGGAGGGG  550

seq1  AAGTTGACAGGGATAGGAAGGACATAAAAGCAAATGAGGAGGTGAGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACAGGGATAGGAAGGACATAAAAGCAAATGAGGAGGTGAGAATA  600

seq1  GTCAGTCTGCATAAAGTACAATGTATAAAATTCACAAAGAAGTAATATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTGCATAAAGTACAATGTATAAAATTCACAAAGAAGTAATATAG  650

seq1  TAAAAGCCATTTAAA-TTTGTAATATGATGTATACAACCAATTAAAAAAT  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCATTTAAATTTTGTAATATGATGTATACAACCAATTAAAAAAT  700

seq1  AACTTAAAAC-TTCTGAGCATTTTTGGGTAATTTAGCCTC-TTTTCTCAC  747
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  AACTTAAAACTTTCTGAGCATTTTTGGGTAATTTAGCCTCTTTTTCTCAC  750

seq1  CATGGTCTATAACTCCAGGCACAGTTGCTAAACCCTCCAGAATCCTTTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTATAACTCCAGGCACAGTTGCTAAACCCTCCAGAATCCTTTGT  800

seq1  CTCATTCTCTATGTAGCACTATCCTGCTAAGAGTGCTAATTAAGCAAAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTCTATGTAGCACTATCCTGCTAAGAGTGCTAATTAAGCAAAGA  850

seq1  AG-AGGGAAGGCAGGCTTTGTCGTAATAACCAAATAATAGCTACAGCCAG  896
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAAGGCAGGCTTTGTCGTAATAACCAAATAATAGCTACAGCCAG  900

seq1  GGAAACAGT-GGGAGCTGCCTTATTTGGTGG-TGATGTTCAA-TATCGCC  943
      ||||||||| ||||||||||||| ||||||| |||||||||| |||||||
seq2  GGAAACAGTGGGGAGCTGCCTTA-TTGGTGGTTGATGTTCAATTATCGCC  949

seq1  AATCAAAACCCCACTTT-AATCTTCTGGGACC-AATCATAAA-TTACGAA  990
      ||||||||||||||||| |||||||||||||| ||||||||| |||||||
seq2  AATCAAAACCCCACTTTAAATCTTCTGGGACCAAATCATAAATTTACGAA  999

seq1  GCCTCAAGCCCTATAC-TTGTTTGAAGTCACTTGCTTGGCTCATC-TTGT  1038
      |||   |||| ||||| |||||||||||  ||||||||||||||| ||||
seq2  GCCCTCAGCCTTATACTTTGTTTGAAGTTCCTTGCTTGGCTCATCTTTGT  1049

seq1  GAGTAGTTCTCTCTACGATGCAA-TCTAGCAC-TTACA-TTTCCTCCCAG  1085
      ||||||||||| ||||||||||| |||||||| ||||| |||||||| ||
seq2  GAGTAGTTCTCCCTACGATGCAATTCTAGCACTTTACATTTTCCTCCAAG  1099

seq1  G-TTGTCT---CGACT-CCCACA---TTCGTTCTGA-CTCAG  1118
      | ||||||    |||| ||||||   |||||||||| |||||
seq2  GTTTGTCTTTCGGACTCCCCACAAATTTCGTTCTGACCTCAG  1141

seq1: chr3_117209981_117211069
seq2: B6Ng01-191P08.g_68_1182 (reverse)

seq1  CATGTG--CTGGAATATTGCTATAATTG-ATGAACCTA--CATC--AGTG  43
      ||||||  ||||||   |||||||| || |||||||||   |||  ||||
seq2  CATGTGGACTGGAAATATGCTATAAATGAATGAACCTAACAATCAGAGTG  50

seq1  TTCTATTACCATGGCTTCTATTATGCTTTCTCTTGGTGTT-ATAC-ATTC  91
      ||||||||| ||||||||   ||||||| |||| | |||| |||| ||||
seq2  TTCTATTACAATGGCTTCATATATGCTTCCTCTGGTTGTTAATACAATTC  100

seq1  TTTG-AGTTTTGAAC-AGTT-AAAAACGATGTATATTGT-CCATTAATAT  137
       ||| |||||||||| |||| |||||||||||||||||| ||||||||||
seq2  CTTGAAGTTTTGAACAAGTTAAAAAACGATGTATATTGTCCCATTAATAT  150

seq1  A-TTTTGCATGGGTA-GAGAG--ATGGC-TCAA-CCAAT-AAAGTTCCTG  180
      | ||||||||||||| |||||  ||||| |||| ||||| ||||||||||
seq2  ATTTTTGCATGGGTAGGAGAGGAATGGCTTCAACCCAATAAAAGTTCCTG  200

seq1  TCACACAAGCATAAAGACCTGATTTC-AGATTTCCC-AGAATCCACATGA  228
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TCACACAAGCATAAAGACCTGATTTCAAGATTTCCCAAGAATCCACATGA  250

seq1  TTGTGTATATCTCCGATTCCCGTACT-AACTATG-AAAGGTAGAGACTGT  276
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  TTGTGTATATCTCCGATTCCCGTACTAAACTATGAAAAGGTAGAGACTGT  300

seq1  CAGATTATTGGCTCTTGCTGG-CCAGCCAGTCCAGACAATGAGAAAGTGT  325
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGATTATTGGCTCTTGCTGGCCCAGCCAGTCCAGACAATGAGAAAGTGT  350

seq1  TAGGTCCAGTGAGGA-CCTTGTATCAAAAGATATTATGGAGCTTTATGGG  374
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAGGTCCAGTGAGGACCCTTGTATCAAAAGATATTATGGAGCTTTATGGG  400

seq1  GAAAACAAATAGTTCATATCACACTCTGGTCACCACGTACATGCATTAGT  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAATAGTTCATATCACACTCTGGTCACCACGTACATGCATTAGT  450

seq1  AAACACACACATACACACAACCTCGGTGCATTTAACACTTGGATCTCTCA  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACACATACACACAACCTCGGTGCATTTAACACTTGGATCTCTCA  500

seq1  AAGTTTATAGAAACTATATAAAGTATCATTTCCTTTCATATTTTCTATAC  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATAGAAACTATATAAAGTATCATTTCCTTTCATATTTTCTATAC  550

seq1  AAACATTTCTAGTTTGCATCATATTTGGATTTCTGAACTAGACCACCCTG  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCTAGTTTGCATCATATTTGGATTTCTGAACTAGACCACCCTG  600

seq1  TCTGTAATGCACTTTCAGAGCAGATGACCGCACACCGTGTAAAGAATCGG  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATGCACTTTCAGAGCAGATGACCGCACACCGTGTAAAGAATCGG  650

seq1  GTTCCTCATTACCTTACAGGAGAGTGGTTTGGGAGAAAGACTGTGAGCTG  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCATTACCTTACAGGAGAGTGGTTTGGGAGAAAGACTGTGAGCTG  700

seq1  AAGCTATTTGTGGGTGGGAAAGTAATTCTCTCCCTTTAGCATCACTGTAC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTGTGGGTGGGAAAGTAATTCTCTCCCTTTAGCATCACTGTAC  750

seq1  ACTTGCATCATTTGACAGTCACCTTGATGCTTCTGGACCAATCCTTAGGT  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATCATTTGACAGTCACCTTGATGCTTCTGGACCAATCCTTAGGT  800

seq1  GGCTGATTTCAGTTTCAAAAACCCACCGAGTTTCAAGTAAATTGTTTGTA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATTTCAGTTTCAAAAACCCACCGAGTTTCAAGTAAATTGTTTGTA  850

seq1  ATTTAGACACGATTCAGTCTCAACATCCCATGAGGTGTTTGATTCTACCA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACACGATTCAGTCTCAACATCCCATGAGGTGTTTGATTCTACCA  900

seq1  GACTTCCTTTGTACAGTCTGAACATCATGTCAGTGCACACAGAACCGCTT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTTTGTACAGTCTGAACATCATGTCAGTGCACACAGAACCGCTT  950

seq1  TCTTGATTCAGTGACTCCTGAGGCAACAGATATTTGTGGAGGCTAAAGCA  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTCAGTGACTCCTGAGGCAACAGATATTTGTGGAGGCTAAAGCA  1000

seq1  CTTGTTTCAGGACAAAACAGCTAAGTGACAGAGTAGTTGCCCCTAGGAAC  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCAGGACAAAACAGCTAAGTGACAGAGTAGTTGCCCCTAGGAAC  1050

seq1  TCAGGAGCTGGAAGATTCTTGACACTACTTGGTATTTATAATCTGAAGGA  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGCTGGAAGATTCTTGACACTACTTGGTATTTATAATCTGAAGGA  1100

seq1  TGATGTGCTGAATTC  1089
      |||||||||||||||
seq2  TGATGTGCTGAATTC  1115