BAC Information

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BAC

Clone NameB6Ng01-192F02
Chromosome3 (Build37)13 (Build37)
Map Location 41,060,074 - 41,060,180117,101,164 - 117,102,319
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192F02.bB6Ng01-192F02.g
ACCGA015587GA015588
length1,0341,179
definitionB6Ng01-192F02.b B6Ng01-192F02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,060,074 - 41,060,180)(117,101,164 - 117,102,319)
sequence
gaattctttgtttacctctgtaccccattttaatggggttattctttcag
caattttttagcctccacaatagtgtcagagtttggtgactgtctctggg
atgaatccccaggtgtgacagtctctcgatggccttcctttcagtctcag
ctttgcactccaaatttgctcccttgagtactttgttccactttctaaga
aggacccaagcacccacactttggtcttctttctttttgagcttcatgtg
gtctgtgaattgtattttagttatttggagcttttgggctaatatccact
tatcagtgcataccatgtatgttcttttgtgattaggttgcctcactcaa
gatgatattttctagttccattcctttgcctaagaatttgatgaattaat
tgtttttaatagctgagtagtattccattgtgtaaatgtaccaatttttc
tatatctatttctctgttgaaggacctattggttttttttctaacttctg
gctattataaataagattgctatgaacatagtggatcttgtgtccctgtt
atatattggagaatcttttgggtatatgcccagaagaggtatagtttagt
cctcaggtaatactatgtccaattttctgaggaactgccaaactgatttc
cagagtggttgtgctggctttcaatcccacaaacaatggaggagtgttcc
tctttctccacatcctccccagtacctgctgtcacctgagtttttgatct
tagctattctgactggtgtgaggtggaatctcagggttgttttgccttgc
attttcctgatgactaaggatgttgaacatttctataggtgcttacccac
ccttcaagtttacacagttgagaatttgtttagctctgtaccctttttaa
tggggttgtttgggttctcgtgagtctaacttcttcagttctttgtatat
attggatattagccctctattggacttaggattggtgaagatctttacca
atttgtggttgatgttttgtcctaatgacagtgt
gaattcccacacttctgccggagcttctagagggactttgatcagagaga
gagagagagagagagagagagagagagagagagagagagagagagagagg
ctacaaacagaatcgtagaagggttcagcttgtttttttttttgtttgtt
tgttttgttttgttttgttttcctcttagaagagccagaggttagggaac
tcctttttgtgtttcttccaccagatctaaaccatgataaaacctgtgaa
ccccacctaggccgcagtggccgagttagaaagcctgtgacttttcagag
tacacacagagagaaaagaggttaagaagcaggagtgggtttttcccccc
tttcttgttttgctgttttctttaagaaggcagatgggaatctcttccct
tcctgttctttttttttttttaattataaattattttgaagtccgtgagc
aggatggaaagttgtgtagactccggttaactttaccggttggttgtgtt
ttttcctttcaaccccggtttctgctctctgacatcctatgtgtggtatc
ttttgtcaagctgcttttgccaagcccagagaagcagttccctccgtaca
agggcatgctacccttctatacagccaggttgaccatgatttaaaaacaa
caacaaacaacaacaaagataaataggggatctgaaccaattctatttct
tcacgctatgtttataatgtggcatctaaaagaagcatcagtctagtgac
ttgagacccacaaaggaccctcactcttcacccttccaaaacatatacag
gcattcaccaaaacaattagtaatgttttaattcaaacaacacattattt
acaaagggtcgttggtcatagcaattcccaagtagaaaatcctagcgtac
agtttgggaacaaactttcaatgtgagcaggtctttccaacagcattcac
gacacgttttccttttttttagttcaaggcactattgtaaacaggcattc
aatccccttggttcttagtgtgaataaaaagccagggatccatggcaaag
ctactccacttcagtggaaacgccttggagggaacttcagtaatagtaag
atccggtgattgaaagtcttctgaagatctggtgtgtttttggaatttat
acaattggcatatgaaaattctgaagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41060074_41060180
seq2: B6Ng01-192F02.b_465_576 (reverse)

seq1  TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG--AAA  48
      ||||||||||||||||||  ||||||||||||||||||||| | |  |||
seq2  TCCACTATGTTCATAGCAATCTTATTTATAATAGCCAGAAGTTAGAAAAA  50

seq1  GAACCCAT---CAACTCAACAGAGGAGTGGATACAGAAAATGTGGTACAT  95
       |||| ||       ||||||||| | | |||| ||||||  ||||||||
seq2  AAACCAATAGGTCCTTCAACAGAGAAATAGATATAGAAAAATTGGTACAT  100

seq1  TTACACAATGGA  107
      ||||||||||||
seq2  TTACACAATGGA  112

seq1: chr13_117101164_117102319
seq2: B6Ng01-192F02.g_66_1244

seq1  GAATTCCCACACTTCTGCCGGAGCTTCTAGAGGGACTTTGATCAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACACTTCTGCCGGAGCTTCTAGAGGGACTTTGATCAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  100

seq1  CTACAAACAGAATCGTAGAAGGGTTCAGCTTGTTTTTTTTTTTGTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAACAGAATCGTAGAAGGGTTCAGCTTGTTTTTTTTTTTGTTTGTT  150

seq1  TGTTTTGTTTTGTTTTGTTTTCCTCTTAGAAGAGCCAGAGGTTAGGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTCCTCTTAGAAGAGCCAGAGGTTAGGGAAC  200

seq1  TCCTTTTTGTGTTTCTTCCACCAGATCTAAACCATGATAAAACCTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTGTGTTTCTTCCACCAGATCTAAACCATGATAAAACCTGTGAA  250

seq1  CCCCACCTAGGCCGCAGTGGCCGAGTTAGAAAGCCTGTGACTTTTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTAGGCCGCAGTGGCCGAGTTAGAAAGCCTGTGACTTTTCAGAG  300

seq1  TACACACAGAGAGAAAAGAGGTTAAGAAGCAGGAGTGGGTTTTTCCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGAGAGAAAAGAGGTTAAGAAGCAGGAGTGGGTTTTTCCCCCC  350

seq1  TTTCTTGTTTTGCTGTTTTCTTTAAGAAGGCAGATGGGAATCTCTTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTTTGCTGTTTTCTTTAAGAAGGCAGATGGGAATCTCTTCCCT  400

seq1  TCCTGTTCTTTTTTTTTTTTTAATTATAAATTATTTTGAAGTCCGTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCTTTTTTTTTTTTTAATTATAAATTATTTTGAAGTCCGTGAGC  450

seq1  AGGATGGAAAGTTGTGTAGACTCCGGTTAACTTTACCGGTTGGTTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGAAAGTTGTGTAGACTCCGGTTAACTTTACCGGTTGGTTGTGTT  500

seq1  TTTTCCTTTCAACCCCGGTTTCTGCTCTCTGACATCCTATGTGTGGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTCAACCCCGGTTTCTGCTCTCTGACATCCTATGTGTGGTATC  550

seq1  TTTTGTCAAGCTGCTTTTGCCAAGCCCAGAGAAGCAGTTCCCTCCGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAAGCTGCTTTTGCCAAGCCCAGAGAAGCAGTTCCCTCCGTACA  600

seq1  AGGGCATGCTACCCTTCTATACAGCCAGGTTGACCATGATTTAAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATGCTACCCTTCTATACAGCCAGGTTGACCATGATTTAAAAACAA  650

seq1  CAACAAACAACAACAAAGATAAATAGGGGATCTGAACCAATTCTATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAACAACAAAGATAAATAGGGGATCTGAACCAATTCTATTTCT  700

seq1  TCACGCTATGTTTATAATGTGGCATCTAAAAGAAGCATCAGTCTAGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCTATGTTTATAATGTGGCATCTAAAAGAAGCATCAGTCTAGTGAC  750

seq1  TTGAGACCCACAAAGGACCCTCACTCTTCACCCTTCC-AAACATATACAG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGAGACCCACAAAGGACCCTCACTCTTCACCCTTCCAAAACATATACAG  800

seq1  GCATTCACCAAAACAATTAGTAATGTTTTAATTCAAACAACACATTA-TT  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCATTCACCAAAACAATTAGTAATGTTTTAATTCAAACAACACATTATTT  850

seq1  ACAAAGGGTCGTTGGTCATAGCAATT-CCAAGTAGAAAAT-CTAGCGTAC  896
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  ACAAAGGGTCGTTGGTCATAGCAATTCCCAAGTAGAAAATCCTAGCGTAC  900

seq1  AGTTTGGGAACAAACTTTCAATGTGAGCAGGTCTT--CCACAGCATTCAC  944
      |||||||||||||||||||||||||||||||||||  | |||||||||||
seq2  AGTTTGGGAACAAACTTTCAATGTGAGCAGGTCTTTCCAACAGCATTCAC  950

seq1  GACACGTTTTCC-TTTTTTTAGTTCAGGGCACTATTGTAAACAGGCATTC  993
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  GACACGTTTTCCTTTTTTTTAGTTCAAGGCACTATTGTAAACAGGCATTC  1000

seq1  ATTCCCC-TGGTTCTTAGACTGA--TAAAAGCCA-GGATCCATGCAAAAG  1039
      | ||||| ||||||||||  |||   |||||||| |||||||||  ||||
seq2  AATCCCCTTGGTTCTTAGTGTGAATAAAAAGCCAGGGATCCATGGCAAAG  1050

seq1  CTACTCCAC-TCAGTGGAAGACGC--TGGAGGGAAC-TCAGTAATAGTAG  1085
      ||||||||| ||||||||| ||||  |||||||||| |||||||||||| 
seq2  CTACTCCACTTCAGTGGAA-ACGCCTTGGAGGGAACTTCAGTAATAGTAA  1099

seq1  GATCGGGTGA-TGAAAGTGCTCTGAAGATCT-GTGTGTTTGTG---ATTA  1130
      |||| ||||| |||||||  ||||||||||| |||||||| ||    |||
seq2  GATCCGGTGATTGAAAGTCTTCTGAAGATCTGGTGTGTTTTTGGAATTTA  1149

seq1  TACAATTTGCATA-GAAA--TC-GAAGTTC  1156
      ||||||| ||||| ||||  || |||||||
seq2  TACAATTGGCATATGAAAATTCTGAAGTTC  1179