BAC Information

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BAC

Clone NameB6Ng01-192F20
Chromosome3 (Build37)
Map Location 41,325,433 - 41,416,106
singlet/doubletdoublet
Overlap geneLOC100039115, Phf17
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1
Downstream geneSclt1, D3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192F20.bB6Ng01-192F20.g
ACCGA015622GA015623
length1,1211,141
definitionB6Ng01-192F20.b B6Ng01-192F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,414,977 - 41,416,106)(41,325,433 - 41,326,566)
sequence
gaattcataaggaccatggttctataagagtctcaagaccaactacaaaa
cagcaagtctcgatgttttgtctcctcttaagatgtgaaccacaaggttc
agttccattgtgtactacaggaaccctcataagaccttacaacccacaag
accttaacagcaacacagctgaggtcctttttacaagctgctcatctgaa
aatgcctgctttctccgaaaacaatcactggagtcgatcttgatggcatt
tgaagtgtattttttgtttgttttttattgaaatgcccctaaagcaaaca
aagatggagaaggcccagtgttgtctgaactataatttctatctacctga
cttgaagctcaggcaggcctcccttaagtaccacttccactaaagaagct
ctcattccacaaaatgaccctaactagttcccagaatcgcaaaagtttga
gccatgaactctaaaagacacatgtaaagtcatgggcatctcccttgaaa
gtgtctttaagggcaggaaactaagcatcccagcttagaaatgagaaaga
aaagccactcttgggggcttcagctgcatttgcatagcatcccacaacaa
taaagtcttttcaaatggttgtaattgctgttcagctcaaaatgaagaaa
agatttgtttctcttttctgaatttctgcttttgttttctaataacaagg
tctcattctgtagcctagcgtgacctagaactcacaacctagtccagctg
actaaaatgttggcactcctcctacctcagcccccagaatgctaacaagt
ataagccgccatgttcagcagcagcaggacttctggatgaactacatttc
agttctaacccaaaatatgttctgaccccttgagaagagccaagtacaaa
tctcaaccatgatgcaagcagctgccggggatacccataaaataaggact
ccattccagccacacaccacatcatccctttatcactgactcttagcaag
taccaaagcttcaactaggagctctgtatactacatcacatcccagaaac
caaagagatacagagtgacttaagaattcttaactacattgtctttacaa
tgacactactgggaaacttac
gaattcaaggctggccacaacaagtgagaagcttgaggccggtctgggct
ataggaaatccttgataattaattaattaattaattaattattaaaatcg
gcagaaattcattaaagtgatggcaacgtgcttcagaactcagggtacaa
ctgcagtgttttatatacatctttcacaaaacaaacagctatatagccta
tctggcaaaataatcaaataaaaaaatgcactatatattttctagttaat
gacatttatctgttcctgtgatttaagttgcaagtctctgagtagaacta
tgcctttaattctgggactactgggccatgagtcacttgcaaggtatctt
ccctaagtacgtattaatgtgcttcacagactggaaactggcctatcagg
tttgtttaatgtttctctcgtgaagaaccttgaagcaattgaatgttaca
atttttttcctgtgtgattttttattagctacagaaccttgccaagtcac
tcaagctaatctgcaagtcctgtaattatcacaaaaaactactctggcaa
attaaacccacttctcaatgcaggcttaataggcaagagggctgtttgga
aagctcagtggattataagcgctactttacaaaacacaccgcagcacact
tacacttggagacagtggccttaaatagttaaacaagtccattgacatca
accgggtgcatttcctttgtttatttttcccccgaaagacttcattacct
ccaaagcacctgactgaagaggagcaaaaggcctggtggaattgcgcagc
tcagatggagggaagcagagaacccctcgtgtggaaaagttcgtggaggt
cactggaggtgagggctgtgagacaagctccgagggaacgtctcagagag
aaggacacttgggttacagtcaaggggtcacgcagcacaaggagtctctg
aagacagaataaaaataagtacaaagtagaatcaaaaacaaagtcttagg
gcgtttgatcagccagttgaatgttgaaaaccaatagcgagagcggtaag
cttagtcctcagaattagttactttgtcggactcagtgaagaggagatcg
gtgtctgacgtagactagctcgggaaaggattctctgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41414977_41416106
seq2: B6Ng01-192F20.b_42_1162 (reverse)

seq1  GTAAGTTTTCCAAGTAGTGTCATTGGTTAAAGACAATGTAGTTTAGATTC  50
      ||||| ||||| |||||||||||||  |||||||||||||||| ||| | 
seq2  GTAAG-TTTCCCAGTAGTGTCATTG--TAAAGACAATGTAGTTAAGAATT  47

seq1  TTTAAGTTCACTCTGTATCTCTTTGGTGTCTGGGATGGTTGATGGTAGTA  100
       ||||| |||||||||||||||||||| |||||||||  |||| ||||||
seq2  CTTAAG-TCACTCTGTATCTCTTTGGTTTCTGGGATG--TGAT-GTAGTA  93

seq1  TACAGAGGCCTCCTAGTTGAAGCTTTTGGTACTTGCTAAGGAGTCAGTGA  150
      |||||||  |||||||||||||| ||||||||||||||| ||||||||||
seq2  TACAGAG--CTCCTAGTTGAAGC-TTTGGTACTTGCTAA-GAGTCAGTGA  139

seq1  TAAA-GGATGATGT-GTGTGTGGCTGGAATGGAGTCCTTATTTTATGGGT  198
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAAGGGATGATGTGGTGTGTGGCTGGAATGGAGTCCTTATTTTATGGGT  189

seq1  ATCCCCGGCAGCTGCTTGCATCATGGTTGAGATTTGTACTTGGCTCTTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGGCAGCTGCTTGCATCATGGTTGAGATTTGTACTTGGCTCTTCT  239

seq1  CAAGGGGTCAGAACATATTTTGGGTTAGAACTGAAATGTAGTTCATCCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGTCAGAACATATTTTGGGTTAGAACTGAAATGTAGTTCATCCAG  289

seq1  AAGTCCTGCTGCTGCTGAACATGGCGGCTTATACTTGTTAGCATTCTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGCTGCTGCTGAACATGGCGGCTTATACTTGTTAGCATTCTGGG  339

seq1  GGCTGAGGTAGGAGGAGTGCCAACATTTTAGTCAGCTGGACTAGGTTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGTAGGAGGAGTGCCAACATTTTAGTCAGCTGGACTAGGTTGTG  389

seq1  AGTTCTAGGTCACGCTAGGCTACAGAATGAGACCTTGTTATTAGAAAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGGTCACGCTAGGCTACAGAATGAGACCTTGTTATTAGAAAACA  439

seq1  AAAGCAGAAATTCAGAAAAGAGAAACAAATCTTTTCTTCATTTTGAGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAATTCAGAAAAGAGAAACAAATCTTTTCTTCATTTTGAGCTG  489

seq1  AACAGCAATTACAACCATTTGAAAAGACTTTATTGTTGTGGGATGCTATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAATTACAACCATTTGAAAAGACTTTATTGTTGTGGGATGCTATG  539

seq1  CAAATGCAGCTGAAGCCCCCAAGAGTGGCTTTTCTTTCTCATTTCTAAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAGCTGAAGCCCCCAAGAGTGGCTTTTCTTTCTCATTTCTAAGC  589

seq1  TGGGATGCTTAGTTTCCTGCCCTTAAAGACACTTTCAAGGGAGATGCCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGCTTAGTTTCCTGCCCTTAAAGACACTTTCAAGGGAGATGCCCA  639

seq1  TGACTTTACATGTGTCTTTTAGAGTTCATGGCTCAAACTTTTGCGATTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTACATGTGTCTTTTAGAGTTCATGGCTCAAACTTTTGCGATTCT  689

seq1  GGGAACTAGTTAGGGTCATTTTGTGGAATGAGAGCTTCTTTAGTGGAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTAGTTAGGGTCATTTTGTGGAATGAGAGCTTCTTTAGTGGAAGT  739

seq1  GGTACTTAAGGGAGGCCTGCCTGAGCTTCAAGTCAGGTAGATAGAAATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTAAGGGAGGCCTGCCTGAGCTTCAAGTCAGGTAGATAGAAATTA  789

seq1  TAGTTCAGACAACACTGGGCCTTCTCCATCTTTGTTTGCTTTAGGGGCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGACAACACTGGGCCTTCTCCATCTTTGTTTGCTTTAGGGGCAT  839

seq1  TTCAATAAAAAACAAACAAAAAATACACTTCAAATGCCATCAAGATCGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAAAAACAAACAAAAAATACACTTCAAATGCCATCAAGATCGAC  889

seq1  TCCAGTGATTGTTTTCGGAGAAAGCAGGCATTTTCAGATGAGCAGCTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGATTGTTTTCGGAGAAAGCAGGCATTTTCAGATGAGCAGCTTGT  939

seq1  AAAAAGGACCTCAGCTGTGTTGCTGTTAAGGTCTTGTGGGTTGTAAGGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGACCTCAGCTGTGTTGCTGTTAAGGTCTTGTGGGTTGTAAGGTC  989

seq1  TTATGAGGGTTCCTGTAGTACACAATGGAACTGAACCTTGTGGTTCACAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGGTTCCTGTAGTACACAATGGAACTGAACCTTGTGGTTCACAT  1039

seq1  CTTAAGAGGAGACAAAACATCGAGACTTGCTGTTTTGTAGTTGGTCTTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGGAGACAAAACATCGAGACTTGCTGTTTTGTAGTTGGTCTTGA  1089

seq1  GACTCTTATAGAACCATGGTCCTTATGAATTC  1130
      ||||||||||||||||||||||||||||||||
seq2  GACTCTTATAGAACCATGGTCCTTATGAATTC  1121

seq1: chr3_41325433_41326566
seq2: B6Ng01-192F20.g_66_1206

seq1  GAATTCAAGGCTGGCCACAACAAGTGAGAAGCTTGAGGCCGGTCTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTGGCCACAACAAGTGAGAAGCTTGAGGCCGGTCTGGGCT  50

seq1  ATAGGAAATCCTTGATAATTAATTAATTAATTAATTAATTATTAAAATCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAATCCTTGATAATTAATTAATTAATTAATTAATTATTAAAATCG  100

seq1  GCAGAAATTCATTAAAGTGATGGCAACGTGCTTCAGAACTCAGGGTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATTCATTAAAGTGATGGCAACGTGCTTCAGAACTCAGGGTACAA  150

seq1  CTGCAGTGTTTTATATACATCTTTCACAAAACAAACAGCTATATAGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGTTTTATATACATCTTTCACAAAACAAACAGCTATATAGCCTA  200

seq1  TCTGGCAAAATAATCAAATAAAAAAATGCACTATATATTTTCTAGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAAAATAATCAAATAAAAAAATGCACTATATATTTTCTAGTTAAT  250

seq1  GACATTTATCTGTTCCTGTGATTTAAGTTGCAAGTCTCTGAGTAGAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTATCTGTTCCTGTGATTTAAGTTGCAAGTCTCTGAGTAGAACTA  300

seq1  TGCCTTTAATTCTGGGACTACTGGGCCATGAGTCACTTGCAAGGTATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATTCTGGGACTACTGGGCCATGAGTCACTTGCAAGGTATCTT  350

seq1  CCCTAAGTACGTATTAATGTGCTTCACAGACTGGAAACTGGCCTATCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGTACGTATTAATGTGCTTCACAGACTGGAAACTGGCCTATCAGG  400

seq1  TTTGTTTAATGTTTCTCTCGTGAAGAACCTTGAAGCAATTGAATGTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAATGTTTCTCTCGTGAAGAACCTTGAAGCAATTGAATGTTACA  450

seq1  ATTTTTTTCCTGTGTGATTTTTTATTAGCTACAGAACCTTGCCAAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCCTGTGTGATTTTTTATTAGCTACAGAACCTTGCCAAGTCAC  500

seq1  TCAAGCTAATCTGCAAGTCCTGTAATTATCACAAAAAACTACTCTGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTAATCTGCAAGTCCTGTAATTATCACAAAAAACTACTCTGGCAA  550

seq1  ATTAAACCCACTTCTCAATGCAGGCTTAATAGGCAAGAGGGCTGTTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCCACTTCTCAATGCAGGCTTAATAGGCAAGAGGGCTGTTTGGA  600

seq1  AAGCTCAGTGGATTATAAGCGCTACTTTACAAAACACACCGCAGCACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGTGGATTATAAGCGCTACTTTACAAAACACACCGCAGCACACT  650

seq1  TACACTTGGAGACAGTGGCCTTAAATAGTTAAACAAGTCCATTGACATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGGAGACAGTGGCCTTAAATAGTTAAACAAGTCCATTGACATCA  700

seq1  ACCGGGTGCATTTCCTTTGTTTATTTTTCCCCCGAAAGACTTCATTACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGTGCATTTCCTTTGTTTATTTTTCCCCCGAAAGACTTCATTACCT  750

seq1  CCAAAGCACCTGACTGAAGAGGAGCAAAAGGCCTGGTGGAATTGCGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCACCTGACTGAAGAGGAGCAAAAGGCCTGGTGGAATTGCGCAGC  800

seq1  TCAGATGGAGGGAAGCAGAGAACCCCTCGTGTGGAAAAGTTCGTGGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGAGGGAAGCAGAGAACCCCTCGTGTGGAAAAGTTCGTGGAGGT  850

seq1  CACTGGAGGTGAGGGCTGTGAGAACAAGCTCCGAGGGAACGTCTCAGAGA  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACTGGAGGTGAGGGCTGTGAG-ACAAGCTCCGAGGGAACGTCTCAGAGA  899

seq1  GAAGGACACTT-GGTTACAGTC-AGGGGTCACGCAGCACAA-GAGTCTCT  947
      ||||||||||| |||||||||| |||||||||||||||||| ||||||||
seq2  GAAGGACACTTGGGTTACAGTCAAGGGGTCACGCAGCACAAGGAGTCTCT  949

seq1  GAAAGACAAGAT-AAAATAAGTACAAAGTAGAATC-AAAACAAAGTCTTA  995
      | ||||||  || |||||||||||||||||||||| ||||||||||||||
seq2  G-AAGACAGAATAAAAATAAGTACAAAGTAGAATCAAAAACAAAGTCTTA  998

seq1  -GGCGTTTGATCAGCCAAGTTGAATGTTGAAAA-CAATAGCGAGAGCGGT  1043
       ||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GGGCGTTTGATCAGCC-AGTTGAATGTTGAAAACCAATAGCGAGAGCGGT  1047

seq1  AAAAGCTTAGTTCTCAGA--TAAGTAC-TTGTCGGACTCAGTGAAGA-GA  1089
        ||||||||| ||||||  ||  ||| ||||||||||||||||||| ||
seq2  --AAGCTTAGTCCTCAGAATTAGTTACTTTGTCGGACTCAGTGAAGAGGA  1095

seq1  GATC-GTGTCTGACGTAGAACTAGCTTCGGAAAAGA-TCTCTGTATA  1134
      |||| ||||||||||||| |||||||  ||||| || ||||||||||
seq2  GATCGGTGTCTGACGTAG-ACTAGCTCGGGAAAGGATTCTCTGTATA  1141