BAC Information

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BAC

Clone NameB6Ng01-193F17
Chromosome3 (Build37)
Map Location 127,810,038 - 127,983,065
singlet/doubletdoublet
Overlap geneEG668828
Upstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneLOC100043393, EG668831, Pitx2, Enpep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193F17.bB6Ng01-193F17.g
ACCGA016350GA016351
length1,1681,131
definitionB6Ng01-193F17.b B6Ng01-193F17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,981,903 - 127,983,065)(127,810,038 - 127,811,183)
sequence
gaattctcactttatatgtatttcctaaaggggaaaagtttgatacctat
ggtaatagaataataatttaatatcatacctgttgacatatagcttaaca
actgtttttgctatgtcatatattcatattcattcactacttggcataaa
atgttttgagttatagtgtatgtaagactactactacaagtgagatccaa
ttatagtataatccaattcatataggcctgatcttacttctctcatatgc
aaatttggctggaaggatcgtccacatggtagctgtgccctacaagggcc
tcagggaacaatttgcactagctactgcatcaaatagccccaaggggaaa
ttcttcatgcaaactgttgtccactggcttacatagcaacataggtgctt
taactcctccactttgggatggtctcctatttatgacaaagacagcagca
agttagagggactaaaatgaaaggaccaagactgcatccatttcatgctc
atagtccattggctagtgcgctgagcatctgtgtcctcacattcatccag
taagaaagttgtactgtgtggtcgtctaagcctgtggttccggacctgtg
agctgcaacccatttgggttgaatgaccctttcatgggagtcataaaaaa
aatcagaaaacataaatatttacattacaattgacaacactagccgtgta
aatgacagttacaaaatagcaatgaacataattttatgatttgggtcact
acaccatgagggactgtattaaagggtcacaacactgggaaggtgggaca
tcaccaatctattccatgtgtcaaggcaaggtgacagaaacagaagtcaa
agggaagaaatgaaggtaacctaatgcagtgttataaaagcaacaaagtc
aatgagacatttaggaacagggaggggcaccatctcactttgcttagact
ctacattgctctgaaggcttattaaagaattaaacttctatatggaggtg
gaattaatattatagtttgtagaaaaagacttaattttccatgatgcagc
atatttggcataatggggtgttagcttattcagaagaactaatgcacttt
ttattttttaactttcccagtatacaagcacccttctgggagcatgacct
aatgcctgtccatgggag
gaattcacttgctaaagcctaagggttaatatgaatctattggtagctag
aaggatcaataacaacaatagtaggcaaaccaactttctggtggaatttt
tggtcagtagtctcaggtaaagcggtgtcagccatgaacatagcaacaga
aaacaatgtgatttaagaccatggttgacttatatagtaaagctttttgg
ttctaattttgcaaaggaaacttccctcccttcttcaatgtgaggtgtta
agtaagtctctgaattttcttttctttccttctttttttttttcagtgaa
gacttatatttgaatggaatttgaaatttcatagtcaacatttaaagttt
ttaatacatgctgatttttttgctttgctttgttttcttttccctccctc
cttccccctttctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctttctttctctctctctctctctctctctttc
ttccttccttccctccctccctccctccctcctttctcttctcttctctt
ctcttctcttctcttctcttctcttctcttctcttctcttttcttttctt
ttcttttcttttctttcaatatgatctcactacgaagcccttactggcct
ggaactcactatgtgtagtagtctgacccaaactcacagagctccatcta
cttctatctcccaagtgctgaaattaaattccaccgcaaccaactgatat
attgaaaacactttctttcttaaattcctcctcctctggctacttcctct
tgaccagatttctaggcccaagttctcctgacagggggatgataagcttg
ctgctggcaatgaggttttttttttttcccttcactgttttttctatcaa
caggtttcaaagtcagatacgatttatggccttaattaatttattggaaa
ataattataggcagtattaaaatcccattcaatggattgtttaatattta
ctgggaaaggatgcctgaaattttacttagtgggcaagagtcccttacgg
aattataaaagcagaaagagacagcctacaaatagcttgcaggactctac
aaggtttatgcgactcactgctcggtctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127981903_127983065
seq2: B6Ng01-193F17.b_43_1210 (reverse)

seq1  CTCCCTTGGACAGAGCACTTAGGTCATGCT-CCAGA--GGTGCTTTGTAT  47
      ||||| ||||||| ||| |||||||||||| |||||  ||||| ||||||
seq2  CTCCCATGGACAG-GCA-TTAGGTCATGCTCCCAGAAGGGTGC-TTGTAT  47

seq1  ACT-GGAAAGTTAAAAAAAAAAAAAGTGCATTAG-TCCTCTGAAT-AGCT  94
      ||| |||||||| |||||| |||||||||||||| || ||||||| ||||
seq2  ACTGGGAAAGTT-AAAAAATAAAAAGTGCATTAGTTCTTCTGAATAAGCT  96

seq1  ACCACCC--ATATG-CAAATATGCCTGCATCATGGAAAAATTAAGTCTTT  141
      | |||||   |||| |||||||| ||||||||||| ||||||||||||||
seq2  AACACCCCATTATGCCAAATATG-CTGCATCATGG-AAAATTAAGTCTTT  144

seq1  TTCCTACAAACTAT-ATATT-ATTCCACCT-CATATAGAAGTTTAATTCT  188
      || ||||||||||| ||||| ||||||||| |||||||||||||||||||
seq2  TT-CTACAAACTATAATATTAATTCCACCTCCATATAGAAGTTTAATTCT  193

seq1  TTAATAAGCCTTCAGAGCAATGTAGAGTCTAAGCAAAGTGAGATGGTGCC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGCCTTCAGAGCAATGTAGAGTCTAAGCAAAGTGAGATGGTGCC  243

seq1  CCTCCCTGTTCCTAAATGTCTCATTGACTTTGTTGCTTTTATAACACTGC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTTCCTAAATGTCTCATTGACTTTGTTGCTTTTATAACACTGC  293

seq1  ATTAGGTTACCTTCATTTCTTCCCTTTGACTTCTGTTTCTGTCACCTTGC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTACCTTCATTTCTTCCCTTTGACTTCTGTTTCTGTCACCTTGC  343

seq1  CTTGACACATGGAATAGATTGGTGATGTCCCACCTTCCCAGTGTTGTGAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACATGGAATAGATTGGTGATGTCCCACCTTCCCAGTGTTGTGAC  393

seq1  CCTTTAATACAGTCCCTCATGGTGTAGTGACCCAAATCATAAAATTATGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATACAGTCCCTCATGGTGTAGTGACCCAAATCATAAAATTATGT  443

seq1  TCATTGCTATTTTGTAACTGTCATTTACACGGCTAGTGTTGTCAATTGTA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTATTTTGTAACTGTCATTTACACGGCTAGTGTTGTCAATTGTA  493

seq1  ATGTAAATATTTATGTTTTCTGATTTTTTTTATGACTCCCATGAAAGGGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATATTTATGTTTTCTGATTTTTTTTATGACTCCCATGAAAGGGT  543

seq1  CATTCAACCCAAATGGGTTGCAGCTCACAGGTCCGGAACCACAGGCTTAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACCCAAATGGGTTGCAGCTCACAGGTCCGGAACCACAGGCTTAG  593

seq1  ACGACCACACAGTACAACTTTCTTACTGGATGAATGTGAGGACACAGATG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCACACAGTACAACTTTCTTACTGGATGAATGTGAGGACACAGATG  643

seq1  CTCAGCGCACTAGCCAATGGACTATGAGCATGAAATGGATGCAGTCTTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGCACTAGCCAATGGACTATGAGCATGAAATGGATGCAGTCTTGG  693

seq1  TCCTTTCATTTTAGTCCCTCTAACTTGCTGCTGTCTTTGTCATAAATAGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCATTTTAGTCCCTCTAACTTGCTGCTGTCTTTGTCATAAATAGG  743

seq1  AGACCATCCCAAAGTGGAGGAGTTAAAGCACCTATGTTGCTATGTAAGCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATCCCAAAGTGGAGGAGTTAAAGCACCTATGTTGCTATGTAAGCC  793

seq1  AGTGGACAACAGTTTGCATGAAGAATTTCCCCTTGGGGCTATTTGATGCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACAACAGTTTGCATGAAGAATTTCCCCTTGGGGCTATTTGATGCA  843

seq1  GTAGCTAGTGCAAATTGTTCCCTGAGGCCCTTGTAGGGCACAGCTACCAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAGTGCAAATTGTTCCCTGAGGCCCTTGTAGGGCACAGCTACCAT  893

seq1  GTGGACGATCCTTCCAGCCAAATTTGCATATGAGAGAAGTAAGATCAGGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACGATCCTTCCAGCCAAATTTGCATATGAGAGAAGTAAGATCAGGC  943

seq1  CTATATGAATTGGATTATACTATAATTGGATCTCACTTGTAGTAGTAGTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGAATTGGATTATACTATAATTGGATCTCACTTGTAGTAGTAGTC  993

seq1  TTACATACACTATAACTCAAAACATTTTATGCCAAGTAGTGAATGAATAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACACTATAACTCAAAACATTTTATGCCAAGTAGTGAATGAATAT  1043

seq1  GAATATATGACATAGCAAAAACAGTTGTTAAGCTATATGTCAACAGGTAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATGACATAGCAAAAACAGTTGTTAAGCTATATGTCAACAGGTAT  1093

seq1  GATATTAAATTATTATTCTATTACCATAGGTATCAAACTTTTCCCCTTTA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAATTATTATTCTATTACCATAGGTATCAAACTTTTCCCCTTTA  1143

seq1  GGAAATACATATAAAGTGAGAATTC  1163
      |||||||||||||||||||||||||
seq2  GGAAATACATATAAAGTGAGAATTC  1168

seq1: chr3_127810038_127811183
seq2: B6Ng01-193F17.g_65_1195

seq1  GAATTCACTTGCTAAAGCCTAAGGGTTAATATGAATCTATTGGTAGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCTAAAGCCTAAGGGTTAATATGAATCTATTGGTAGCTAG  50

seq1  AAGGATCAATAACAACAATAGTAGGCAAACCAACTTTCTGGTGGAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCAATAACAACAATAGTAGGCAAACCAACTTTCTGGTGGAATTTT  100

seq1  TGGTCAGTAGTCTCAGGTAAAGCGGTGTCAGCCATGAACATAGCAACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTAGTCTCAGGTAAAGCGGTGTCAGCCATGAACATAGCAACAGA  150

seq1  AAACAATGTGATTTAAGACCATGGTTGACTTATATAGTAAAGCTTTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTGATTTAAGACCATGGTTGACTTATATAGTAAAGCTTTTTGG  200

seq1  TTCTAATTTTGCAAAGGAAACTTCCCTCCCTTCTTCAATGTGAGGTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTTTGCAAAGGAAACTTCCCTCCCTTCTTCAATGTGAGGTGTTA  250

seq1  AGTAAGTCTCTGAATTTTCTTTTCTTTCCTTCTTTTTTTTTTTCAGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTCTCTGAATTTTCTTTTCTTTCCTTCTTTTTTTTTTTCAGTGAA  300

seq1  GACTTATATTTGAATGGAATTTGAAATTTCATAGTCAACATTTAAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATATTTGAATGGAATTTGAAATTTCATAGTCAACATTTAAAGTTT  350

seq1  TTAATACATGCTGATTTTTTTGCTTTGCTTTGTTTTCTTTTCCCTCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACATGCTGATTTTTTTGCTTTGCTTTGTTTTCTTTTCCCTCCCTC  400

seq1  CTTCCCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  450
      |||||||    |||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCC----CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  446

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTC  496

seq1  TTTCTTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCTTTCTCTTCTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCTTTCTCTTCTCTTC  546

seq1  TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTTCTTT  596

seq1  TCTTTTCTTTTCTTTTCTTTCAATATGATCTCACTACGAAGCCCTTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCTTTTCTTTCAATATGATCTCACTACGAAGCCCTTACTG  646

seq1  GCCTGGAACTCACTATGTGTAGTAGTCTGACCCAAACTCACAGAGCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAACTCACTATGTGTAGTAGTCTGACCCAAACTCACAGAGCTCCA  696

seq1  TCTACTTCTATCTCCCAAGTGCTGAAATTAAATTCCACCGCAACCAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCTATCTCCCAAGTGCTGAAATTAAATTCCACCGCAACCAACTG  746

seq1  ATATATTGAAAACACTTTCTTTCTTAAATTCCTCCTCCTCTGGCTACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGAAAACACTTTCTTTCTTAAATTCCTCCTCCTCTGGCTACTTC  796

seq1  CTCTTGACCAGATTTCTAGGCCCAAGTTCTCCTGACAGGGGGATGATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGACCAGATTTCTAGGCCCAAGTTCTCCTGACAGGGGGATGATAAG  846

seq1  CTTGCTGCTGGCAATGAGGTTTTTTTTTTTTCCCTTCACTGTTTTTTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCTGGCAATGAGGTTTTTTTTTTTTCCCTTCACTGTTTTTTCTA  896

seq1  TCAACAAGTTTCAAAGTCAGATACGATTTATTGGCTTAAATTAATTTATT  950
      |||||| ||||||||||||||||||||||| |||| | ||||||||||||
seq2  TCAACAGGTTTCAAAGTCAGATACGATTTA-TGGCCTTAATTAATTTATT  945

seq1  GG-AAATAATTATAGTCAGTATTAAAAT-CCATTCAATGAATTGTTTTTA  998
      || |||||||||||| |||||||||||| |||||||||| ||||  ||||
seq2  GGAAAATAATTATAGGCAGTATTAAAATCCCATTCAATGGATTG--TTTA  993

seq1  ATATTTACTGGGAAA-GATGGCTGAGAATTTTACTTAGTGGGCAAGAGTC  1047
      ||||||||||||||| |||| |||| ||||||||||||||||||||||||
seq2  ATATTTACTGGGAAAGGATGCCTGA-AATTTTACTTAGTGGGCAAGAGTC  1042

seq1  CCTTACGG-ATTATAAAAAGCAGGGAAAGAAACAG-CTACAAATAGCTTT  1095
      |||||||| ||||| |||||||  |||||| |||| ||||||||||| ||
seq2  CCTTACGGAATTAT-AAAAGCA--GAAAGAGACAGCCTACAAATAGC-TT  1088

seq1  GCAAGACTTCCTTACCAAAGTGTTTATGCGACTCACTGCTCGGGTTCTGT  1145
      ||| ||||    |||  ||| ||||||||||||||||||||||  |||||
seq2  GCAGGACT---CTAC--AAG-GTTTATGCGACTCACTGCTCGG--TCTGT  1130

seq1  T  1146
      |
seq2  T  1131