BAC Information

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BAC

Clone NameB6Ng01-194F08
Chromosome3 (Build37)
Map Location 4,613,999 - 4,615,149
singlet/doubletsinglet
Overlap genenone
Upstream geneHnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4, Pxmp3, EG620382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194F08.bB6Ng01-194F08.g
ACCGA017057GA017058
length1,2171,127
definitionB6Ng01-194F08.b B6Ng01-194F08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaaacatatacaaatacaaagcaagtaccaaagatcctaagtc
aacgaaacaaaggaccattttggaaagcatatagaagtttcaaaaagtta
agtgcagggcatcaatatttgtggaaaaagtaagataattctgagagggg
attatataataatgaatgtattagaagaaaagcccaaatctggaaaaaca
gcaccaaaatcaacccaaatcaataatctgaaagatattgcagagaagag
aacaaatttgtttaagtgaataacctagcttcagtagagaaaatctcaaa
ataaatagccttttttgtgttattaacaaaattgttgaagacctattaat
atgagtgaagaaaataaaagtgttaggcaaaggtaacaaaactcagtaat
agattttatttctggcttgcaaacatgtaaaggaaaggatggaaactgtg
caaatatatttatatatcatgcagacatgtgcacatgtgtgtatgtgtgt
atttgaaatcttgaaataaatgggacacacactttaaatcatcaaaactg
tatacaacaagattcaaaaaattcaataggtgtttaaccattaataaaag
tgaagatctattttaaaaaaatccctagttctaaataggctaatcagcgt
tttaattaagtttagtggtcacaaattttgtataaccaattatagaaata
gaagcttttctagttcatcttttgaaattcaaaacttgataaaaactgat
aatataagaaaatattgttgaactatattactaatgaatatgaatataat
aaaacatgttagaatagtaaattgttttttattatgtttcgatatgggca
ttgaattcctgatctctccaatattttaacatgaaggggtgatgtctttt
tttttttttttcaaatgccttttcagcatctaaggagatgatcatgtgat
ttttttttcttgattgtggtaaatgatggccctgatgtattcttgaatca
gttgcagattttcttgatattttttgcatccatacagcagaccggtctga
agtctcttcttttggtgatctccgtggatagtatcagagttattgtgctc
agaactaagtttgtcctttcctctttcgatttatgcaatagtttgaggaa
attggatcagcttctttgaaggcttgtagatcgtgactaatcactctggc
cgtagcggcctgatgtg

gaattcaaggtcagtttggcttgtgtggagagtttcagcccagttagagc
catataatcatgccttaaataggcaaactgatgtcctgtcttttactgga
taatggatttgcaaagatttgtagcttacatttcattgtacctgaactaa
atatactggtgtttatatgtgatagtgttacttacataagtactttgtgg
aggttgttttctcaaatagtggactaaaagatgtagaaaaacgttcatac
tgaaaaccttaaggtaaaatttggaagactaaatctgtatgatatttgaa
aactaagaacctaagaaggaaatgtggatcaacataaacaggagctcaaa
aagaaagaccctacagaagtaagacgatttttcttacagtctttctaggc
catttgcaacagggacagttctgattattgtagtgatatctgaatggtaa
gtaatctgaacacaggtttaatagcctgtagagaatgaggacaaggcatg
gatgctaaggccatcaggcttgatactaagccacaacggtcagcaagaca
gaaacaagagttaaacataaatggttagaccatcagggacaacacatact
ttggggacatcacattgggactgtatcgtgtggtataaaattcaaagttc
cttaagctgtctgctattacaaaagtatgtattctctgaaaaaaaaatag
tacagtctttttgaatctctgaattattttttcaatattacatggactgg
ttaattatcagagatataaactacacaagacaaataaatgatgtggaatc
agcaaagcaagggtagaaataaagccttcagtacttcataataataataa
tgacagacataacttaaagtggccgaacttggcataattaagccttccca
tatgtggttgaaatttttgaatgatatgcaatatacaaatagatcaaagg
caaatttgtaacctacaaatgttccataaacaaatttaaattatttgttt
actattattgttacatgcctttacagacagaccagtaatattatatagca
acaaaatatccataagaacggtggaacaaatgcataagaataagaggttc
ctctgagacccacagtgtgagtcctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_4613999_4615149
seq2: B6Ng01-194F08.g_64_1190 (reverse)

seq1  CTAGGAGAACTTCACACTGTGGGGTCTTCAGAGGAACCTCTTATTTTCCT  50
      ||||||     ||||||||| ||||| ||||||||||||||||||   ||
seq2  CTAGGA----CTCACACTGT-GGGTC-TCAGAGGAACCTCTTATT---CT  41

seq1  TTAATGCATTTTGTTTCAACGTTTCTTATGGATAATTTTGGTTTTGCCTT  100
      |  ||||| |||||| || || ||||||||||| ||||||   ||||  |
seq2  T--ATGCA-TTTGTTCCACCG-TTCTTATGGAT-ATTTTG---TTGC--T  81

seq1  ATATAATATTTAACTGGTCCTGTCTGTAAAGGCATGTAAC-ATAATAGTA  149
      ||||||||||  |||||| ||||||||||||||||||||| |||||||||
seq2  ATATAATATT--ACTGGT-CTGTCTGTAAAGGCATGTAACAATAATAGTA  128

seq1  AACAAATAATTTTAAATTTGGTTTATGGAACATTTGTAGGTTACAAATTT  199
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  AACAAATAA-TTTAAATTT-GTTTATGGAACATTTGTAGGTTACAAATTT  176

seq1  GCCTTTGATCTATTTGTATATTGCATATCATTTCAAAAATTTCAACCACA  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCTTTGATCTATTTGTATATTGCATATCA-TTCAAAAATTTCAACCACA  225

seq1  TATTGGAAGGCTTAATTATGCCAAGTTCGGCCACTTTAAGTTATGTCTGT  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAGGCTTAATTATGCCAAGTTCGGCCACTTTAAGTTATGTCTGT  275

seq1  CATTATTATTATTATGAAGTACTGAAGGCTTTATTTCTACCCTTGCTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTATTATTATGAAGTACTGAAGGCTTTATTTCTACCCTTGCTTTG  325

seq1  CTGATTCCACATCATTTATTTGTCTTGTGTAGTTTATATCTCTGATAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCACATCATTTATTTGTCTTGTGTAGTTTATATCTCTGATAATT  375

seq1  AACCAGTCCATGTAATATTGAAAAAATAATTCAGAGATTCAAAAAGACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTCCATGTAATATTGAAAAAATAATTCAGAGATTCAAAAAGACTG  425

seq1  TACTATTTTTTTTTCAGAGAATACATACTTTTGTAATAGCAGACAGCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTTTTTTTCAGAGAATACATACTTTTGTAATAGCAGACAGCTTA  475

seq1  AGGAACTTTGAATTTTATACCACACGATACAGTCCCAATGTGATGTCCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTTGAATTTTATACCACACGATACAGTCCCAATGTGATGTCCCC  525

seq1  AAAGTATGTGTTGTCCCTGATGGTCTAACCATTTATGTTTAACTCTTGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGTGTTGTCCCTGATGGTCTAACCATTTATGTTTAACTCTTGTT  575

seq1  TCTGTCTTGCTGACCGTTGTGGCTTAGTATCAAGCCTGATGGCCTTAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGCTGACCGTTGTGGCTTAGTATCAAGCCTGATGGCCTTAGCA  625

seq1  TCCATGCCTTGTCCTCATTCTCTACAGGCTATTAAACCTGTGTTCAGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCTTGTCCTCATTCTCTACAGGCTATTAAACCTGTGTTCAGATT  675

seq1  ACTTACCATTCAGATATCACTACAATAATCAGAACTGTCCCTGTTGCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCATTCAGATATCACTACAATAATCAGAACTGTCCCTGTTGCAAA  725

seq1  TGGCCTAGAAAGACTGTAAGAAAAATCGTCTTACTTCTGTAGGGTCTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAGAAAGACTGTAAGAAAAATCGTCTTACTTCTGTAGGGTCTTTC  775

seq1  TTTTTGAGCTCCTGTTTATGTTGATCCACATTTCCTTCTTAGGTTCTTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGCTCCTGTTTATGTTGATCCACATTTCCTTCTTAGGTTCTTAG  825

seq1  TTTTCAAATATCATACAGATTTAGTCTTCCAAATTTTACCTTAAGGTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATATCATACAGATTTAGTCTTCCAAATTTTACCTTAAGGTTTT  875

seq1  CAGTATGAACGTTTTTCTACATCTTTTAGTCCACTATTTGAGAAAACAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGAACGTTTTTCTACATCTTTTAGTCCACTATTTGAGAAAACAAC  925

seq1  CTCCACAAAGTACTTATGTAAGTAACACTATCACATATAAACACCAGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAAAGTACTTATGTAAGTAACACTATCACATATAAACACCAGTAT  975

seq1  ATTTAGTTCAGGTACAATGAAATGTAAGCTACAAATCTTTGCAAATCCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTCAGGTACAATGAAATGTAAGCTACAAATCTTTGCAAATCCAT  1025

seq1  TATCCAGTAAAAGACAGGACATCAGTTTGCCTATTTAAGGCATGATTATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTAAAAGACAGGACATCAGTTTGCCTATTTAAGGCATGATTATA  1075

seq1  TGGCTCTAACTGGGCTGAAACTCTCCACACAAGCCAAACTGACCTTGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTAACTGGGCTGAAACTCTCCACACAAGCCAAACTGACCTTGAAT  1125

seq1  TC  1151
      ||
seq2  TC  1127


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