BAC Information

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BAC

Clone NameB6Ng01-195I15
Chromosome3 (Build37)
Map Location 114,829,944 - 115,028,721
singlet/doubletdoublet
Overlap genenone
Upstream geneCol11a1, LOC100043220, Olfm3
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195I15.bB6Ng01-195I15.g
ACCGA017932GA017933
length9881,166
definitionB6Ng01-195I15.b B6Ng01-195I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,829,944 - 114,830,836)(115,027,565 - 115,028,721)
sequence
gaattctacttaatttaccacaaaatagtgagccaatatattctcattaa
catggtctacagagaatatttgggattgaataaactatgaccttttcaat
ggtttaaaatatacttgaaaatataaatgtttagcgactagagatggatc
aacagttaaaagcacttactgcttttccaaagaacctagttctatgtata
aagtttcacaactcacaaaacctagagctagcttcaaacaatctagcatc
tttggcatccatgggaacctgaactcaaatgcacataaacacacatttat
agacacatgattattttaaagtcagattctagaaaaaaaaagtcattata
acctttatattatttttctagagaactgtaatttttttatattccttttt
ttatttatttacactccaaattttattcccctcctggttcaccctcctac
tgatccacaatcactaccacctccctgtgcccctggctccagaagtattt
tcccaccccccaccccaccagaactctaaactccctaggtctgcagtttc
ttgagggttaggtgcatcttctctgattaaactcagactcagcagtcccc
tgctgtatatgtgttgggggcctcatatcagctgctgtatgttgtcttgt
gggtggtccagtgtctgagagatctcaggggtccaggttaattgagactg
ctggtcctcctacagggttgccctcctcctcagcttcttccagctttccc
taattcaaccatggggattagcagcttctgtccattggttgggtacaaat
ttctgcatctgactctttcagatgcttcttgggtcttttgaaggacagcc
aagataggtcccttttagtgagcgctccatatcctcagtaatcttgtcag
ccttggggcctccccttgagctggatcctactttgggcctgtttctagac
cttctttctcagttctccatttccattcctgcacttct

gaattcacaggctttgccaaagttttcatgacatcactttctaattagga
aagcagtgttaggctagtctgggaaaatgctatcctccggattgttgtgt
ttgattttcatgttacatctggataagtaaggtaatttaaaggatgctca
ttctatgaataacatagacaattgttgttgttgttgttggttcacatcag
agataatttgaaagacctaaagggaattctaggcagtttcttcaaggact
aaggtttaacagccttatacatgaaatgaggatacaaaaggccaaggggg
ttcttggaaatctcaaaagaggtagcagtcttttatctgatttttcttac
aggagacttttattattccatacagaacttatgatgaaaaagctttaatt
tatttaatctttgcaattccatgccagagaataccataaattcatctctc
ttaaagctcagtgatatgtttagtctggtgtttttcctattgcctcgctg
ttgaaaacatgtaatttactttagagcatatttgattattgtggtgataa
ggaagatctctttctttaagaattcttgttaggtatttttttaaatcaaa
aatttatcaagtacttattatcagccaagtattataatatgtgctaggaa
gataaaaatgatgaatcagacatcagctctgccgccctggggcttagaac
ttgtgttcatctttgagtaccagtgtatttcaggaccagtggaggggact
ctcaatctcagttagctagggtgcaaataagtgtagaagagggaaaggca
atccattttaaatgacatttctacaaaccacgtgcatatctacaaatgct
cagtttcctgctgatgtggagcagtcttctttttctcagaggaatgacac
atactcccctatggccaacttgaaaggatttgacattttcaatgaatctt
tccacaattttcacatagatttttcttatctttctcattgcatttctctt
tccatcggttttgatggattttcaatattcacctcctccatgctcttgga
catttcaaattttatatttcttctgagttatacacgctctttattagcct
ggcggactttaatccttccattgttacactctcttcttagctctaatggg
tacacatctggactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114829944_114830836
seq2: B6Ng01-195I15.b_31_923

seq1  GAATTCTACTTAATTTACCACAAAATAGTGAGCCAATATATTCTCATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTAATTTACCACAAAATAGTGAGCCAATATATTCTCATTAA  50

seq1  CATGGTCTACAGAGAATATTTGGGATTGAATAAACTATGACCTTTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTACAGAGAATATTTGGGATTGAATAAACTATGACCTTTTCAAT  100

seq1  GGTTTAAAATATACTTGAAAATATAAATGTTTAGCGACTAGAGATGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAAATATACTTGAAAATATAAATGTTTAGCGACTAGAGATGGATC  150

seq1  AACAGTTAAAAGCACTTACTGCTTTTCCAAAGAACCTAGTTCTATGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTAAAAGCACTTACTGCTTTTCCAAAGAACCTAGTTCTATGTATA  200

seq1  AAGTTTCACAACTCACAAAACCTAGAGCTAGCTTCAAACAATCTAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCACAACTCACAAAACCTAGAGCTAGCTTCAAACAATCTAGCATC  250

seq1  TTTGGCATCCATGGGAACCTGAACTCAAATGCACATAAACACACATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATCCATGGGAACCTGAACTCAAATGCACATAAACACACATTTAT  300

seq1  AGACACATGATTATTTTAAAGTCAGATTCTAGAAAAAAAAAGTCATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATGATTATTTTAAAGTCAGATTCTAGAAAAAAAAAGTCATTATA  350

seq1  ACCTTTATATTATTTTTCTAGAGAACTGTAATTTTTTTATATTCCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATATTATTTTTCTAGAGAACTGTAATTTTTTTATATTCCTTTTT  400

seq1  TTATTTATTTACACTCCAAATTTTATTCCCCTCCTGGTTCACCCTCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTACACTCCAAATTTTATTCCCCTCCTGGTTCACCCTCCTAC  450

seq1  TGATCCACAATCACTACCACCTCCCTGTGCCCCTGGCTCCAGAAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACAATCACTACCACCTCCCTGTGCCCCTGGCTCCAGAAGTATTT  500

seq1  TCCCACCCCCCACCCCACCAGAACTCTAAACTCCCTAGGTCTGCAGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCCCCACCCCACCAGAACTCTAAACTCCCTAGGTCTGCAGTTTC  550

seq1  TTGAGGGTTAGGTGCATCTTCTCTGATTAAACTCAGACTCAGCAGTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTTAGGTGCATCTTCTCTGATTAAACTCAGACTCAGCAGTCCCC  600

seq1  TGCTGTATATGTGTTGGGGGCCTCATATCAGCTGCTGTATGTTGTCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATATGTGTTGGGGGCCTCATATCAGCTGCTGTATGTTGTCTTGT  650

seq1  GGGTGGTCCAGTGTCTGAGAGATCTCAGGGGTCCAGGTTAATTGAGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTCCAGTGTCTGAGAGATCTCAGGGGTCCAGGTTAATTGAGACTG  700

seq1  CTGGTCCTCCTACAGGGTTGCCCTCCTCCTCAGCTTCTTCCAGCTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTCCTACAGGGTTGCCCTCCTCCTCAGCTTCTTCCAGCTTTCCC  750

seq1  TAATTCAACCATGGGGATTAGCAGCTTCTGTCCATTGGTTGGGTACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAACCATGGGGATTAGCAGCTTCTGTCCATTGGTTGGGTACAAAT  800

seq1  TTCTGCATCTGACTCTTTCAGATGCTTCTTGGGTCTTTTGAAGGACAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATCTGACTCTTTCAGATGCTTCTTGGGTCTTTTGAAGGACAGCC  850

seq1  AAGATAGGTCCCTTTTAGTGAGCGCTCCATATCCTCAGTAATC  893
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGTCCCTTTTAGTGAGCGCTCCATATCCTCAGTAATC  893


seq1: chr3_115027565_115028721
seq2: B6Ng01-195I15.g_66_1231 (reverse)

seq1  GCAGTCAGAATGTGTACCCCTTAAAAGCTAAGGGAAGAAATTGT-ACAAT  49
      ||||||   |||||||||| || | ||||||  ||||| | ||| |||||
seq2  GCAGTCCAGATGTGTACCCATT-AGAGCTAA--GAAGAGAGTGTAACAAT  47

seq1  GGAAAGA-TAAAATCTGC--AGCTAAATAAGAGCCTTGTATAACTCAGGA  96
      |||| || |||| || ||   |||||  ||||| | |||||||||||| |
seq2  GGAAGGATTAAAGTCCGCCAGGCTAATAAAGAG-CGTGTATAACTCAGAA  96

seq1  AGAATATAAAA-TTGATATGTCAAAGAGCATGGAG--AGTGAAATATGAA  143
        ||||||||| |||| ||||| ||||||||||||   |||||   ||||
seq2  GAAATATAAAATTTGAAATGTCCAAGAGCATGGAGGAGGTGAATATTGAA  146

seq1  AA-CCATCAAAACCGATGGAAAGAGAAATGC-ATGAG-AAGATAAGAAAA  190
      || |||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  AATCCATCAAAACCGATGGAAAGAGAAATGCAATGAGAAAGATAAGAAAA  196

seq1  TTCTATGTGAAAATTGTGGAAAGATTCATTGAAAATGTCAAATCC-TTCA  239
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCTATGTGAAAATTGTGGAAAGATTCATTGAAAATGTCAAATCCTTTCA  246

seq1  AGTTGGCCATAGGGGAGTATGTGTCATTCCTCTGAGAAAAAGAAGACTGC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCATAGGGGAGTATGTGTCATTCCTCTGAGAAAAAGAAGACTGC  296

seq1  TCCACATCAGCAGGAAACTGAGCATTTGTAGATATGCACGTGGTTTGTAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCAGCAGGAAACTGAGCATTTGTAGATATGCACGTGGTTTGTAG  346

seq1  -AATGTCATTT-AAATGGATTGCCTTTCCCTCTTCTACACTTATTTGCAC  387
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATTTAAAATGGATTGCCTTTCCCTCTTCTACACTTATTTGCAC  396

seq1  CCTAGCTAACTGAGATTGAGAGTCCCCTCCACTGGTCCTGAAATACACTG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTAACTGAGATTGAGAGTCCCCTCCACTGGTCCTGAAATACACTG  446

seq1  GTACTCAAAGATGAACACAAGTTCTAAGCCCCAGGGCGGCAGAGCTGATG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCAAAGATGAACACAAGTTCTAAGCCCCAGGGCGGCAGAGCTGATG  496

seq1  TCTGATTCATCATTTTTATCTTCCTAGCACATATTATAATACTTGGCTGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCATCATTTTTATCTTCCTAGCACATATTATAATACTTGGCTGA  546

seq1  TAATAAGTACTTGATAAATTTTTGATTTAAAAAAATACCTAACAAGAATT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTACTTGATAAATTTTTGATTTAAAAAAATACCTAACAAGAATT  596

seq1  CTTAAAGAAAGAGATCTTCCTTATCACCACAATAATCAAATATGCTCTAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAAAGAGATCTTCCTTATCACCACAATAATCAAATATGCTCTAA  646

seq1  AGTAAATTACATGTTTTCAACAGCGAGGCAATAGGAAAAACACCAGACTA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTACATGTTTTCAACAGCGAGGCAATAGGAAAAACACCAGACTA  696

seq1  AACATATCACTGAGCTTTAAGAGAGATGAATTTATGGTATTCTCTGGCAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCACTGAGCTTTAAGAGAGATGAATTTATGGTATTCTCTGGCAT  746

seq1  GGAATTGCAAAGATTAAATAAATTAAAGCTTTTTCATCATAAGTTCTGTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGCAAAGATTAAATAAATTAAAGCTTTTTCATCATAAGTTCTGTA  796

seq1  TGGAATAATAAAAGTCTCCTGTAAGAAAAATCAGATAAAAGACTGCTACC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAATAAAAGTCTCCTGTAAGAAAAATCAGATAAAAGACTGCTACC  846

seq1  TCTTTTGAGATTTCCAAGAACCCCCTTGGCCTTTTGTATCCTCATTTCAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGATTTCCAAGAACCCCCTTGGCCTTTTGTATCCTCATTTCAT  896

seq1  GTATAAGGCTGTTAAACCTTAGTCCTTGAAGAAACTGCCTAGAATTCCCT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGGCTGTTAAACCTTAGTCCTTGAAGAAACTGCCTAGAATTCCCT  946

seq1  TTAGGTCTTTCAAATTATCTCTGATGTGAACCAACAACAACAACAACAAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCTTTCAAATTATCTCTGATGTGAACCAACAACAACAACAACAAT  996

seq1  TGTCTATGTTATTCATAGAATGAGCATCCTTTAAATTACCTTACTTATCC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGTTATTCATAGAATGAGCATCCTTTAAATTACCTTACTTATCC  1046

seq1  AGATGTAACATGAAAATCAAACACAACAATCCGGAGGATAGCATTTTCCC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAACATGAAAATCAAACACAACAATCCGGAGGATAGCATTTTCCC  1096

seq1  AGACTAGCCTAACACTGCTTTCCTAATTAGAAAGTGATGTCATGAAAACT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCCTAACACTGCTTTCCTAATTAGAAAGTGATGTCATGAAAACT  1146

seq1  TTGGCAAAGCCTGTGAATTC  1157
      ||||||||||||||||||||
seq2  TTGGCAAAGCCTGTGAATTC  1166


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