BAC Information

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BAC

Clone NameB6Ng01-195I18
Chromosome3 (Build37)
Map Location 4,355,350 - 4,356,526
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195I18.bB6Ng01-195I18.g
ACCGA017936GA017937
length1,1531,180
definitionB6Ng01-195I18.b B6Ng01-195I18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaccagtcatagatggataatgtctgggggaaaagccatactgt
tgctaggatgactcctgcttatattttaaattaactggaattttccatga
ttttctttgttaatatcttaaattttcttttttatgttatacttttcttt
tatttatttttgttaaatattttctttatttacatttcaaatgtaatccc
ctttcctggtttctcctacaaaaccctcctacctacccgccccgccccct
acctgcttaccaacccacccaatcctgattcttggccctggcattcccct
accctgggacatagagccttcacaggaccaaggatctctctttcctttga
tggccaattaggccatactctgctacatatgcaactggagccatgagtcc
catcctgtgtactctttggttggtggtttagtccctgagagctcaggggg
tactggttagttcatattgtttttcctcctatgggactgcaaacctcttc
agctccttaggtactttctttagctccttctatggggatcctgtgctcag
tccaatgggtggctgtgaacatccacttctgtatgtgtcaggtactggaa
gaacctctcaggagacagttatatcaggttcctgtcagcaagatattgtt
ggcatccacaatagtgtttgggtttggtgattgcatatgggatggaatcc
caaggtggggcagtctctgaatggtcatttgttcagcctctgtttcacag
tttgtctctgaaactccttccatgggtattttgttcccccttctagaaag
gagtgaagtatccacactttggtctttctttcttgagtttcatgtggttt
gtaattttgtatcttgggtattccgagtttctgagctaatatccacttat
cagtgagtgcgtatcattgtgtgtccttttgtgattggggtaccctcacc
tcagatgatatcctttagtatccattcatttgcctaagatttccataaat
ttaatttgtttctataagcttgcatagtactccatcgtgttaatgaccca
ttaatttctgtatcctttcctctgttgagagaactcttgggattcttcca
gctttctggcttgttaaaactacgatccttatgaacacatacggttgcca
gag

gaattcttgactttcctcagtgatggtgcatgacctggaaatgtatgccc
aataaatcttgtttctctcagatatttttggtcatggtttttgtcacagc
aacatactactgaacctcaaattcctttcttctagcttctttctcttcag
tcctcaaaatggttccacttctttgctttatttcataaattattcctaat
gtgacgtgtcccacacattcccagagtttataaagtaaatttttcttgga
caacctgacaatagttcacttcataatttgacaaaaaaaaatctcctttg
atgccataaatctaaaattcagaaaaaatactcctcatgcagtcattgtt
aatatgaacagaaactaatattttttcagctatgtaattttttattggtt
actttatttatttacatttcaaatgttatcccacttccctgtttgccctc
caacccaccatattacctcctcccaccccctgcctctatgagggtgctcc
cctacccacgtacacactcccacctcagagctctagcagtaccctctgct
ggatcattgagcctccaccgggccaaggggtttcccttccactgatgcca
aaataactattgtgtgcttcatatcatcttgacatttacagatgtaggga
tcatgttagatatataaaaagactaccaagacttaggaaataatctgaag
atatcctttgggaaacagcaacttgtgttacttttgggaaataagataga
tacatgtttttatttctatattgctaattgatatctatatgaacatttat
ttttcaactgactatgttacaccaaactctttttcatagtttggtaagat
tgtttggtgttaaaaggacgtggcaaataccaatatgatgttataaattg
attcttcagaaaggacacagtagaaagtgagaattgacctcagaacgttg
tcttctgacctgaatgagaacagagtgtgaccatacaaacatggatgtgc
atgcatgattgtgggcacatacacatgcacatgtataatcataaaacttc
taaatttttattgtatatagtttaaacctgaattatatggatattcttat
atcagcatacatataccaatatgcctcaattggatatggtattatttgaa
acgtgacaaattgggtcatattttaataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_4355350_4356526
seq2: B6Ng01-195I18.g_68_1247

seq1  GAATTCTTGACTTTCCTCAGTGATGGTGCATGACCTGGAAATGTATGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACTTTCCTCAGTGATGGTGCATGACCTGGAAATGTATGCCC  50

seq1  AATAAATCTTGTTTCTCTCAGATATTTTTGGTCATGGTTTTTGTCACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTGTTTCTCTCAGATATTTTTGGTCATGGTTTTTGTCACAGC  100

seq1  AACATACTACTGAACCTCAAATTCCTTTCTTCTAGCTTCTTTCTCTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTACTGAACCTCAAATTCCTTTCTTCTAGCTTCTTTCTCTTCAG  150

seq1  TCCTCAAAATGGTTCCACTTCTTTGCTTTATTTCATAAATTATTCCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAATGGTTCCACTTCTTTGCTTTATTTCATAAATTATTCCTAAT  200

seq1  GTGACGTGTCCCACACATTCCCAGAGTTTATAAAGTAAATTTTTCTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGTGTCCCACACATTCCCAGAGTTTATAAAGTAAATTTTTCTTGGA  250

seq1  CAACCTGACAATAGTTCACTTCATAATTTGACAAAAAAAAATCTCCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGACAATAGTTCACTTCATAATTTGACAAAAAAAAATCTCCTTTG  300

seq1  ATGCCATAAATCTAAAATTCAGAAAAAATACTCCTCATGCAGTCATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATAAATCTAAAATTCAGAAAAAATACTCCTCATGCAGTCATTGTT  350

seq1  AATATGAACAGAAACTAATATTTTTTCAGCTATGTAATTTTTTATTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAACAGAAACTAATATTTTTTCAGCTATGTAATTTTTTATTGGTT  400

seq1  ACTTTATTTATTTACATTTCAAATGTTATCCCACTTCCCTGTTTGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTTATTTACATTTCAAATGTTATCCCACTTCCCTGTTTGCCCTC  450

seq1  CAACCCACCATATTACCTCCTCCCACCCCCTGCCTCTATGAGGGTGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACCATATTACCTCCTCCCACCCCCTGCCTCTATGAGGGTGCTCC  500

seq1  CCTACCCACGTACACACTCCCACCTCAGAGCTCTAGCAGTACCCTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCACGTACACACTCCCACCTCAGAGCTCTAGCAGTACCCTCTGCT  550

seq1  GGATCATTGAGCCTCCACCGGGCCAAGGGGTTTCCCTTCCACTGATGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTGAGCCTCCACCGGGCCAAGGGGTTTCCCTTCCACTGATGCCA  600

seq1  AAATAACTATTGTGTGCTTCATATCATCTTGACATTTACAGATGTAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTATTGTGTGCTTCATATCATCTTGACATTTACAGATGTAGGGA  650

seq1  TCATGTTAGATATATAAAAAGACTACCAAGACTTAGGAAATAATCTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAGATATATAAAAAGACTACCAAGACTTAGGAAATAATCTGAAG  700

seq1  ATATCCTTTGGGAAACAGCAACTTGTGTTACTTTTGGGAAATAAGATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTTGGGAAACAGCAACTTGTGTTACTTTTGGGAAATAAGATAGA  750

seq1  TACATGTTTTTATTTCTATATTGCTAATTGATATCTATATGAACATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTTTTATTTCTATATTGCTAATTGATATCTATATGAACATTTAT  800

seq1  TTTTCAACTGACTATGTTACACCAAACTCTTTTTCATAGTTTGGTAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACTGACTATGTTACACCAAACTCTTTTTCATAGTTTGGTAAGAT  850

seq1  TGTTTGGTGTTAAAAGGACGTGGCAAATACCAAATATGATGTTATAAATT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTTGGTGTTAAAAGGACGTGGCAAATACC-AATATGATGTTATAAATT  899

seq1  GATTCTTCAG-AAGGACACAGTAGAAAGTGAGAATTGACCTCAGAACGTT  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCAGAAAGGACACAGTAGAAAGTGAGAATTGACCTCAGAACGTT  949

seq1  GTCTTCTGACCTGAATGAGAACAAGAGTGTGACCATACAAACATGGATGT  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTCTTCTGACCTGAATGAGAAC-AGAGTGTGACCATACAAACATGGATGT  998

seq1  GCATGCATGATTGTGGGCACATACACATGCACATGTATAATCATAAAACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGATTGTGGGCACATACACATGCACATGTATAATCATAAAACT  1048

seq1  TCTAAA-TTTTATTGTATATAAGTTTAAA-CTGAAATATATGGATATCTT  1097
      |||||| ||||||||||||| |||||||| ||||| |||||||||||  |
seq2  TCTAAATTTTTATTGTATAT-AGTTTAAACCTGAATTATATGGATATTCT  1097

seq1  TATATCAGCATACATATACC-ATATG-CTCATATTGTATAT-GTATATAT  1144
      |||||||||||||||||||| ||||| |||| |||| |||| |||| |||
seq2  TATATCAGCATACATATACCAATATGCCTCA-ATTGGATATGGTAT-TAT  1145

seq1  TTAAAACGTGACAAATTGTGTC--ATTTTAATAAG  1177
      || ||||||||||||||| |||  |||||||||||
seq2  TTGAAACGTGACAAATTGGGTCATATTTTAATAAG  1180


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