BAC Information

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BAC

Clone NameB6Ng01-197J07
Chromosome3 (Build37)
Map Location 49,549,075 - 49,670,113
singlet/doubletdoublet
Overlap genePcdh18
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197J07.bB6Ng01-197J07.g
ACCGA019405GA019406
length971668
definitionB6Ng01-197J07.b B6Ng01-197J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,669,141 - 49,670,113)(49,549,075 - 49,549,741)
sequence
gaattcatggaaagcggatgttcctggaatccgaaacttcagagagaagt
cagcctgctgcgcgctagtcctctgagaagcagactctgtttattgtcct
aatatggcacttagaacagaacactttgggggtggggatgatatctgttg
gttatttctgcaaactcctgtgtctccattctcattccttcactgtatct
tagtagtgacagctgccaaacacttgtgggctcttcgctaaactttcacg
aaccgcttccatggactgtttaatttttttctgagaatctatcttcttga
attgtggtagtatgtgtgttctaatcttcgtgcaagctgatcacagtgaa
ttctgctctgaggacatttagtaacctacattttgggaggtgtctggcaa
gtcttgtgatagcattatatgtatttcgttttggtagatcacctaaatgt
tcacttttaatgtatagataagttgggaaaggttttgggattgcttgttt
tattttcaatgctagaggaccgaacctaggactttgtatgtgctagagag
aaatcctattaatttattaatttatttattaaaatggcacaagcctatca
agaaagcacattttgacaccttccaaagagattgcattaaataaataaaa
ttaaatgggtggctattcatccacctgttttctatattatacaatctcct
tttgtattggtaatatccctccgataaaagagacagagtaaatcagtttt
accagatgtgtcctgagaattctagtcatttcttcaatagaacaccaggt
ggaataacttcctgggactgggcctacccgtgaggcaagctaatctatgt
agacacagtaagtagtatgacactgcttactaggcatagctaaacgttct
cctcacaccaaggcataaggagttgtgtgttttataacaattaattgttc
aacttatgccagtaccgagtc

gaattcttctccggggatgaacatgttgcttctgtagtcagaggatggcg
agggcagcgggggcatccagcactggtcagagtggcccaggactctgcac
tcctccgtacatagcctcattgctgagaacaaacaaagcaaggagagtcc
gttattaaacaaggcatcatccatagcaatgggaaatgtcatcttattct
taaggtagaaagaggttttgtgctagaatcataatgttaatctgttgtta
ggcacattagataggctacggttatatgtttcagttgtatgttggctctc
tggaccagatgtcatgtttgtgctatagtcttccgtttaataaaagaaag
cgaataatcatttttagtggtcaatagtaaatttcagaaatataatacgg
agttcattatttatatgtgaacatgtccaaacaaagctaaggcttaggta
atccaacaaacgatgaacataaactgtacaacagcaacagctggaaatag
agctgagggcgagctcttcaattctgaataataccaggcaatctctgtaa
agtattttttgctgtcttgaaaataaggacttggcctgcactgaaaactt
cagttctctggttagtgtccttatcattctcttcctaccttccttccttt
ccttccttccttccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49669141_49670113
seq2: B6Ng01-197J07.b_45_1015 (reverse)

seq1  GACTCGGGTACTGTGCATTAAGTTGAACAATTAATTGTTTCTAAAACACA  50
      ||||| ||||||| ||| ||||||||||||||||||| || |||||||||
seq2  GACTC-GGTACTG-GCA-TAAGTTGAACAATTAATTG-TTATAAAACACA  46

seq1  CAACTCCTTATGCCTTGGTGTGTGGAG-ACGTTTAGCTATGCCTAGTAAG  99
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CAACTCCTTATGCCTTGGTGTGAGGAGAACGTTTAGCTATGCCTAGTAAG  96

seq1  CAGTGTCATACTACTTACTGTGTCTACATAGATTAGCTTGCCTCACGGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCATACTACTTACTGTGTCTACATAGATTAGCTTGCCTCACGGGT  146

seq1  AGG-CCAGTCCCAGGAAGTTATTCCACCTGGTGTTCTATTGAAGAAATGA  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGTCCCAGGAAGTTATTCCACCTGGTGTTCTATTGAAGAAATGA  196

seq1  CTAGAATTCTCAGGACACATCTGGTAAAACTGATTTACTCTGTCTCTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTCTCAGGACACATCTGGTAAAACTGATTTACTCTGTCTCTTTT  246

seq1  ATCGGAGGGATATTACCAATACAAAAGGAGATTGTATAATATAGAAAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGAGGGATATTACCAATACAAAAGGAGATTGTATAATATAGAAAACA  296

seq1  GGTGGATGAATAGCCACCCATTTAATTTTATTTATTTAATGCAATCTCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATGAATAGCCACCCATTTAATTTTATTTATTTAATGCAATCTCTT  346

seq1  TGGAAGGTGTCAAAATGTGCTTTCTTGATAGGCTTGTGCCATTTTAATAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTGTCAAAATGTGCTTTCTTGATAGGCTTGTGCCATTTTAATAA  396

seq1  ATAAATTAATAAATTAATAGGATTTCTCTCTAGCACATACAAAGTCCTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAATAAATTAATAGGATTTCTCTCTAGCACATACAAAGTCCTAG  446

seq1  GTTCGGTCCTCTAGCATTGAAAATAAAACAAGCAATCCCAAAACCTTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGTCCTCTAGCATTGAAAATAAAACAAGCAATCCCAAAACCTTTCC  496

seq1  CAACTTATCTATACATTAAAAGTGAACATTTAGGTGATCTACCAAAACGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATCTATACATTAAAAGTGAACATTTAGGTGATCTACCAAAACGA  546

seq1  AATACATATAATGCTATCACAAGACTTGCCAGACACCTCCCAAAATGTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATATAATGCTATCACAAGACTTGCCAGACACCTCCCAAAATGTAG  596

seq1  GTTACTAAATGTCCTCAGAGCAGAATTCACTGTGATCAGCTTGCACGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAAATGTCCTCAGAGCAGAATTCACTGTGATCAGCTTGCACGAAG  646

seq1  ATTAGAACACACATACTACCACAATTCAAGAAGATAGATTCTCAGAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACACACATACTACCACAATTCAAGAAGATAGATTCTCAGAAAAA  696

seq1  AATTAAACAGTCCATGGAAGCGGTTCGTGAAAGTTTAGCGAAGAGCCCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACAGTCCATGGAAGCGGTTCGTGAAAGTTTAGCGAAGAGCCCAC  746

seq1  AAGTGTTTGGCAGCTGTCACTACTAAGATACAGTGAAGGAATGAGAATGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTGGCAGCTGTCACTACTAAGATACAGTGAAGGAATGAGAATGG  796

seq1  AGACACAGGAGTTTGCAGAAATAACCAACAGATATCATCCCCACCCCCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGGAGTTTGCAGAAATAACCAACAGATATCATCCCCACCCCCAA  846

seq1  AGTGTTCTGTTCTAAGTGCCATATTAGGACAATAAACAGAGTCTGCTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTGTTCTAAGTGCCATATTAGGACAATAAACAGAGTCTGCTTCT  896

seq1  CAGAGGACTAGCGCGCAGCAGGCTGACTTCTCTCTGAAGTTTCGGATTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACTAGCGCGCAGCAGGCTGACTTCTCTCTGAAGTTTCGGATTCC  946

seq1  AGGAACATCCGCTTTCCATGAATTC  973
      |||||||||||||||||||||||||
seq2  AGGAACATCCGCTTTCCATGAATTC  971


seq1: chr3_49549075_49549741
seq2: B6Ng01-197J07.g_70_737

seq1  GAATTCTTCTCCGGGGATGAACATGTTGCTTCTGTAGTCAGAGGATGGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCCGGGGATGAACATGTTGCTTCTGTAGTCAGAGGATGGCG  50

seq1  AGGGCAGCGGGGGCATCCAGCACTGGTCAGAGTGGCCCAGGACTCTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCGGGGGCATCCAGCACTGGTCAGAGTGGCCCAGGACTCTGCAC  100

seq1  TCCTCCGTACATAGCCTCATTGCTGAGAACAAACAAAGCAAGGAGAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGTACATAGCCTCATTGCTGAGAACAAACAAAGCAAGGAGAGTCC  150

seq1  GTTATTAAACAAGGCATCATCCATAGCAATGGGAAATGTCATCTTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAACAAGGCATCATCCATAGCAATGGGAAATGTCATCTTATTCT  200

seq1  TAAGGTAGAAAGAGGTTTTGTGCTAGAATCATAATGTTAATCTGTTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGAAAGAGGTTTTGTGCTAGAATCATAATGTTAATCTGTTGTTA  250

seq1  GGCACATTAGATAGGCTACGGTTATATGTTTCAGTTGTATGTTGGCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTAGATAGGCTACGGTTATATGTTTCAGTTGTATGTTGGCTCTC  300

seq1  TGGACCAGATGTCATGTTTGTGCTATAGTCTTCCGTTTAATAAAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGATGTCATGTTTGTGCTATAGTCTTCCGTTTAATAAAAGAAAG  350

seq1  CGAATAATCATTTTTAGTGGTCAATAGTAAATTTCAGAAATATAATACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAATCATTTTTAGTGGTCAATAGTAAATTTCAGAAATATAATACGG  400

seq1  AGTTCATTATTTATATGTGAACATGTCCAAACAAAGCTAAGGCTTAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTATTTATATGTGAACATGTCCAAACAAAGCTAAGGCTTAGGTA  450

seq1  ATCCAACAAACGATGAACATAAACTGTACAACAGCAACAGCTGGAAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACAAACGATGAACATAAACTGTACAACAGCAACAGCTGGAAATAG  500

seq1  AGCTGAGGGCGAGCTCTTCAATTCTGAATAATACCAGGCAATCTCTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGGCGAGCTCTTCAATTCTGAATAATACCAGGCAATCTCTGTAA  550

seq1  AGTATTTTTTGCTGTCTTGAAAATAAGGACTTGGCCTGCACTGAAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTTGCTGTCTTGAAAATAAGGACTTGGCCTGCACTGAAAACTT  600

seq1  CAGTTCTCTGGTTAGTGTCCTTATCATTCTCTTCCTACCTTCCTTCC-TT  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGTTCTCTGGTTAGTGTCCTTATCATTCTCTTCCTACCTTCCTTCCTTT  650

seq1  CCTTCCTTCCTTCCTTCC  667
      ||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTCC  668


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