BAC Information

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BAC

Clone NameB6Ng01-198B03
Chromosome3 (Build37)
Map Location 127,425,757 - 127,612,398
singlet/doubletdoublet
Overlap geneAlpk1, T2bp, BC002199, 5730508B09Rik
Upstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2
Downstream geneLOC100043382, EG668828, LOC100043393
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198B03.bB6Ng01-198B03.g
ACCGA019762GA019763
length1,0291,073
definitionB6Ng01-198B03.b B6Ng01-198B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,611,841 - 127,612,398)(127,425,757 - 127,426,805)
sequence
gaattcaaggccattcgggctggcttaaccaaatgtcatacactaactgg
cttaaatttgggcatggagagatgatagctcagaggctaaagagcactaa
ctgcttctccagaggacctgggttcagttcccagcacccacatggtagtt
tacaaccatctgggacttcagttaaagtctgtgttctggactctgtgggc
agtacatgtatgtagtccacagacagacatgtaggcaaaacccggtcata
caaaataaaaatggatgtaattgtcatctcggaggcttactgcctttgat
tgctaaccttgacccagtccaggaagcatccagcctctgcaccatctaaa
ctaggcctagaatgttttctgcctctgagatttactgctgaatatgctca
ttctttctagttctttctgaactctggctggctggttcacctcagctgct
ctggctcaaactcctctccaagatgaccgattcaatctggcttctctcag
cctctcactaaattgctctgcttggcctcaaactaactctggcaattcgt
tctgatcttctgactctttcttattctgtggcttcaactgcctctgctgc
gcgaactgaacagaactaaactcaactccactgccttctgtgctgactgt
ctgaacagaactgactgactcctgaatgctggaattcaaggcgtatacca
ccactcctggatctaagcttttctgtaccaggaagttgccctgtaccagg
ctggctttaaactcagagatctacttctccttctctactggggattaaag
gtatatctgtattccatctagagtggccatgttgctggattaaaattcct
ctacaatccatgttttaattcatagacatctttctgtctcttcacatgac
agaagaagcaaaggaattctctgctgtcttttcttataaggataattttt
ttttgttgttttcttgccctaaaagacgttacattttacagtacatttat
attgtaatttatatgtaatttacgcatta
gaattccctaagatgctcttgtgtgctcatatattaaaggaatcttgatg
agagtttttccttcaacaagagaaaaactatctattcattcattgggaat
aatcccgaaacataaagccatgtaagcaaagtgaaaattctgggctcttg
tcattgcttttatacccaatctccatacaaatagatcttgtatgtgatat
atataaaaaaatacatttgagttagtaaatttccttgatggtcatctgag
aaattaaaggtaaaaaaaaataatgttaccacgaggctccagagatggct
tggtggctaagagtgctcactgctctcacaggggacctgggttttgttac
caacacccatatggtgtctcacaatcatcttaacttcagttccaggggat
taaacactcttctggcctccacaagcactaggcatgcaagtggcactact
acatatatgcaagcaaacatccatacacgtaaaagaaaaagaaatgaacc
ctttttaaaaagtaatgctcccacaaaagaaaatggtactcccctagaac
acaggcctgggtctccagcctgacctggcttcttacgctgttcttacaaa
atgtaaaatttttataggtttttgaaaatgaacgcatggattagactttg
agcctatgttcacctccccattcctctccacgactcttcccagatgtccc
aacttcacgcttcctttcttctttaataatccctatgctctccttgatga
cccttcccatgcacgggggaggtatcagtttggctcagtggtttctcagc
cttcctaatgctgagacccttaatacaagttttctcatggttgtggtgac
cccccccccccaaataaaattatttcatttgctactttcataccttataa
tttgtgctactgttatgaattgtaaatggtaaataatctgatatgcagga
ttacttgtcatgtagcccccaaaggtgatcgagacatcacagggttgaga
actacccgtgttagtttggtttcctttctttctgcagtgaaaaaataagc
atatctggatcctgaccttgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127611841_127612398
seq2: B6Ng01-198B03.b_45_602 (reverse)

seq1  AGATCAGAACGAATTGCCAGAGTTAGTTTGAGGCCAAGCAGAGCAATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGAACGAATTGCCAGAGTTAGTTTGAGGCCAAGCAGAGCAATTTA  50

seq1  GTGAGAGGCTGAGAGAAGCCAGATTGAATCGGTCATCTTGGAGAGGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGCTGAGAGAAGCCAGATTGAATCGGTCATCTTGGAGAGGAGTT  100

seq1  TGAGCCAGAGCAGCTGAGGTGAACCAGCCAGCCAGAGTTCAGAAAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGAGCAGCTGAGGTGAACCAGCCAGCCAGAGTTCAGAAAGAACT  150

seq1  AGAAAGAATGAGCATATTCAGCAGTAAATCTCAGAGGCAGAAAACATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATGAGCATATTCAGCAGTAAATCTCAGAGGCAGAAAACATTCT  200

seq1  AGGCCTAGTTTAGATGGTGCAGAGGCTGGATGCTTCCTGGACTGGGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAGTTTAGATGGTGCAGAGGCTGGATGCTTCCTGGACTGGGTCAA  250

seq1  GGTTAGCAATCAAAGGCAGTAAGCCTCCGAGATGACAATTACATCCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCAATCAAAGGCAGTAAGCCTCCGAGATGACAATTACATCCATTT  300

seq1  TTATTTTGTATGACCGGGTTTTGCCTACATGTCTGTCTGTGGACTACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTATGACCGGGTTTTGCCTACATGTCTGTCTGTGGACTACATA  350

seq1  CATGTACTGCCCACAGAGTCCAGAACACAGACTTTAACTGAAGTCCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACTGCCCACAGAGTCCAGAACACAGACTTTAACTGAAGTCCCAGA  400

seq1  TGGTTGTAAACTACCATGTGGGTGCTGGGAACTGAACCCAGGTCCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTAAACTACCATGTGGGTGCTGGGAACTGAACCCAGGTCCTCTGG  450

seq1  AGAAGCAGTTAGTGCTCTTTAGCCTCTGAGCTATCATCTCTCCATGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGTTAGTGCTCTTTAGCCTCTGAGCTATCATCTCTCCATGCCCA  500

seq1  AATTTAAGCCAGTTAGTGTATGACATTTGGTTAAGCCAGCCCGAATGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGCCAGTTAGTGTATGACATTTGGTTAAGCCAGCCCGAATGGCC  550

seq1  TTGAATTC  558
      ||||||||
seq2  TTGAATTC  558

seq1: chr3_127425757_127426805
seq2: B6Ng01-198B03.g_68_1140

seq1  GAATTCCCTAAGATGCTCTTGTGTGCTCATATATTAAAGGAATCTTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAGATGCTCTTGTGTGCTCATATATTAAAGGAATCTTGATG  50

seq1  AGAGTTTTTCCTTCAACAAGAGAAAAACTATCTATTCATTCATTGGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTTCCTTCAACAAGAGAAAAACTATCTATTCATTCATTGGGAAT  100

seq1  AATCCCGAAACATAAAGCCATGTAAGCAAAGTGAAAATTCTGGGCTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCGAAACATAAAGCCATGTAAGCAAAGTGAAAATTCTGGGCTCTTG  150

seq1  TCATTGCTTTTATACCCAATCTCCATACAAATAGATCTTGTATGTGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTTTTATACCCAATCTCCATACAAATAGATCTTGTATGTGATAT  200

seq1  ATATAAAAAAATACATTTGAGTTAGTAAATTTCCTTGATGGTCATCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAAATACATTTGAGTTAGTAAATTTCCTTGATGGTCATCTGAG  250

seq1  AAATTAAAGGTAAAAAAAAATAATGTTACCACGAGGCTCCAGAGATGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGGTAAAAAAAAATAATGTTACCACGAGGCTCCAGAGATGGCT  300

seq1  TGGTGGCTAAGAGTGCTCACTGCTCTCACAGGGGACCTGGGTTTTGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTAAGAGTGCTCACTGCTCTCACAGGGGACCTGGGTTTTGTTAC  350

seq1  CAACACCCATATGGTGTCTCACAATCATCTTAACTTCAGTTCCAGGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCCATATGGTGTCTCACAATCATCTTAACTTCAGTTCCAGGGGAT  400

seq1  TAAACACTCTTCTGGCCTCCACAAGCACTAGGCATGCAAGTGGCACTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTCTTCTGGCCTCCACAAGCACTAGGCATGCAAGTGGCACTACT  450

seq1  ACATATATGCAAGCAAACATCCATACACGTAAAAGAAAAAGAAATGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGCAAGCAAACATCCATACACGTAAAAGAAAAAGAAATGAACC  500

seq1  CTTTTTAAAAAGTAATGCTCCCACAAAAGAAAATGGTACTCCCCTAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAAAGTAATGCTCCCACAAAAGAAAATGGTACTCCCCTAGAAC  550

seq1  ACAGGCCTGGGTCTCCAGCCTGACCTGGCTTCTTACGCTGTTCTTACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTGGGTCTCCAGCCTGACCTGGCTTCTTACGCTGTTCTTACAAA  600

seq1  ATGTAAAATTTTTATAGGTTTTTGAAAATGAACGCATGGATTAGACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATTTTTATAGGTTTTTGAAAATGAACGCATGGATTAGACTTTG  650

seq1  AGCCTATGTTCACCTCCCCATTCCTCTCCACGACTCTTCCCAGATGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATGTTCACCTCCCCATTCCTCTCCACGACTCTTCCCAGATGTCCC  700

seq1  AACTTCACGCTTCCTTTCTTCTTTAATAATCCCTATGCTCTCCTTGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCACGCTTCCTTTCTTCTTTAATAATCCCTATGCTCTCCTTGATGA  750

seq1  CCCTTCCCATGCACGGGGGAGGTATCAGTTTGGCTCAGTGG-TTCTCAGC  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCTTCCCATGCACGGGGGAGGTATCAGTTTGGCTCAGTGGTTTCTCAGC  800

seq1  CTTCCTAATGCTGAGACCCTTAATACA--GTTTCTCA-GGTTGTGGTGA-  845
      |||||||||||||||||||||||||||   ||||||| ||||||||||| 
seq2  CTTCCTAATGCTGAGACCCTTAATACAAGTTTTCTCATGGTTGTGGTGAC  850

seq1  CCCCCCCCCCCAAATAAAATTATTTCA-TTGCTAC-TTCATACC-TATAA  892
      ||||||||||||||||||||||||||| ||||||| |||||||| |||||
seq2  CCCCCCCCCCCAAATAAAATTATTTCATTTGCTACTTTCATACCTTATAA  900

seq1  -TTGTGCTACTGTTATGAATTGTAA--TGTAAAT-ATCTGATATGCAGGA  938
       ||||||||||||||||||||||||   |||||| |||||||||||||||
seq2  TTTGTGCTACTGTTATGAATTGTAAATGGTAAATAATCTGATATGCAGGA  950

seq1  TAACT--GCATGTAGCCCCC-AAGGTGGTCGAGACA-CACAGGG-TGAGA  983
      | |||   |||||||||||| |||||| |||||||| ||||||| |||||
seq2  TTACTTGTCATGTAGCCCCCAAAGGTGATCGAGACATCACAGGGTTGAGA  1000

seq1  ACCACCGGT-TTAG-TTGGTTT-CTTTCTATTCTGTAGGTGAAAAATAAG  1030
      || ||| || |||| ||||||| |||||| ||||| ||   |||||||||
seq2  ACTACCCGTGTTAGTTTGGTTTCCTTTCT-TTCTGCAGTGAAAAAATAAG  1049

seq1  CACATCTG-----TGACCTTGACT  1049
      || |||||     ||||||||| |
seq2  CATATCTGGATCCTGACCTTGAAT  1073