BAC Information

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BAC

Clone NameB6Ng01-199D17
Chromosome3 (Build37)
Map Location 95,039,570 - 95,040,680
singlet/doubletsinglet
Overlap geneCdc42se1
Upstream geneEG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11
Downstream geneGm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199D17.b
ACCGA020619
length1,107
definitionB6Ng01-199D17.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgtatagccaagactacacagagaaatcctgtcccagaaacaa
aacaattttggctagctctagctaaccttaacttgctgtgtagaaaagac
tggcctcaaactcaggtccaccagcccctcgaaagctggaactaagggtg
tgtgccaacacacctggtcaaaataagtaactctggaacaccaaatgata
ggaaagagcaccgtggcttttccttccagtactcttgttcaggaaaggct
ctgttggaacaaaagtccatctctgccacgttttctgcatcagccatgcc
cagctgttgatgtaacacacatctgtagtgattactctgaaaccgttttg
cttaattcttttattggaaaaaaaaatgtatcttaaaagtctatcatctt
tttaatataaattacgactcgcaaactcattccaatcaccttgttaagtg
gtggcagcagacacacagagaaggtagctcgatgcaggagagtatccacc
agaagactgtgctcaaagaaactgacacaagactggagctcaggggtcac
ccacaccgtgtcctctccagttaaccccacacagtgcccaacctttcgcc
actgtgacctgacattcatggccttcctgggagcatgctgctaggggcac
aggacctccgtgcctgcaagctcctcccttaaaggaggcaggcctgaacc
acaaggaggcaaactccaaatgaacatccatgaccagtcttagagcctga
aatgccatacggagcgcagagctttggacaaatgaaagtctcagtcacta
ggcaagggataacgggatggctggagtcgccaggagcggatcagtttcca
caaccctgacccattaccacaaaacaagcttcctattacagagctaatga
gaccccagccctctcttctaggaacaggcaggagctcatttgtcttgtct
gcctttctaatcagcctgcaaagaaagggccagaattgacacacctgaga
aaaacaaaaggcctacagactccgtttctacagtactttcccgttaaagc
cactcgtgacacctgatctcccaaagttcctgagtctacccggttcaagg
actagag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95039570_95040680
seq2: B6Ng01-199D17.b_46_1152 (reverse)

seq1  CTCTAGTCTTTGAACCCGGTTAAGACTCAGGGACTTTGGAAGATCAGGTG  50
      |||||||| ||||||| |||  ||||||||| ||||||| ||||||||||
seq2  CTCTAGTCCTTGAACCGGGT--AGACTCAGGAACTTTGGGAGATCAGGTG  48

seq1  TCACGGAGTGGCTTTAAACGGGAAAGTACTGTAGAAACGGAGTCTGTAGG  100
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAC-GAGTGGCTTT-AACGGGAAAGTACTGTAGAAACGGAGTCTGTAGG  96

seq1  CCTTTTG-TTTTCTCAGGTGTTGTC-ATTCTGGCCCTTTCTTTGCAGGCT  148
      ||||||| |||||||||||| |||| ||||||||||||||||||||||||
seq2  CCTTTTGTTTTTCTCAGGTG-TGTCAATTCTGGCCCTTTCTTTGCAGGCT  145

seq1  GATTAGAAAGGCAGAACAAGACAAATGAGCTCCTGCCTGTTCCTAGAAGA  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATTAGAAAGGCAG-ACAAGACAAATGAGCTCCTGCCTGTTCCTAGAAGA  194

seq1  GAGGGCTGGGGTCTCATTAGCTCTGTAATAGGAAGCTTGTTTTGTGGTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGGGGTCTCATTAGCTCTGTAATAGGAAGCTTGTTTTGTGGTAA  244

seq1  TGGGTCAGGGTTGTGGAAACTGATCCGCTCCTGGCGACTCCAGCCATCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGGGTTGTGGAAACTGATCCGCTCCTGGCGACTCCAGCCATCCC  294

seq1  GTTATCCCTTGCCTAGTGACTGAGACTTTCATTTGTCCAAAGCTCTGCGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCTTGCCTAGTGACTGAGACTTTCATTTGTCCAAAGCTCTGCGC  344

seq1  TCCGTATGGCATTTCAGGCTCTAAGACTGGTCATGGATGTTCATTTGGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATGGCATTTCAGGCTCTAAGACTGGTCATGGATGTTCATTTGGAG  394

seq1  TTTGCCTCCTTGTGGTTCAGGCCTGCCTCCTTTAAGGGAGGAGCTTGCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCCTTGTGGTTCAGGCCTGCCTCCTTTAAGGGAGGAGCTTGCAG  444

seq1  GCACGGAGGTCCTGTGCCCCTAGCAGCATGCTCCCAGGAAGGCCATGAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGAGGTCCTGTGCCCCTAGCAGCATGCTCCCAGGAAGGCCATGAAT  494

seq1  GTCAGGTCACAGTGGCGAAAGGTTGGGCACTGTGTGGGGTTAACTGGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTCACAGTGGCGAAAGGTTGGGCACTGTGTGGGGTTAACTGGAGA  544

seq1  GGACACGGTGTGGGTGACCCCTGAGCTCCAGTCTTGTGTCAGTTTCTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGGTGTGGGTGACCCCTGAGCTCCAGTCTTGTGTCAGTTTCTTTG  594

seq1  AGCACAGTCTTCTGGTGGATACTCTCCTGCATCGAGCTACCTTCTCTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTCTTCTGGTGGATACTCTCCTGCATCGAGCTACCTTCTCTGTG  644

seq1  TGTCTGCTGCCACCACTTAACAAGGTGATTGGAATGAGTTTGCGAGTCGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGCCACCACTTAACAAGGTGATTGGAATGAGTTTGCGAGTCGT  694

seq1  AATTTATATTAAAAAGATGATAGACTTTTAAGATACATTTTTTTTTCCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATTAAAAAGATGATAGACTTTTAAGATACATTTTTTTTTCCAA  744

seq1  TAAAAGAATTAAGCAAAACGGTTTCAGAGTAATCACTACAGATGTGTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAATTAAGCAAAACGGTTTCAGAGTAATCACTACAGATGTGTGTT  794

seq1  ACATCAACAGCTGGGCATGGCTGATGCAGAAAACGTGGCAGAGATGGACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACAGCTGGGCATGGCTGATGCAGAAAACGTGGCAGAGATGGACT  844

seq1  TTTGTTCCAACAGAGCCTTTCCTGAACAAGAGTACTGGAAGGAAAAGCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCAACAGAGCCTTTCCTGAACAAGAGTACTGGAAGGAAAAGCCA  894

seq1  CGGTGCTCTTTCCTATCATTTGGTGTTCCAGAGTTACTTATTTTGACCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCTCTTTCCTATCATTTGGTGTTCCAGAGTTACTTATTTTGACCAG  944

seq1  GTGTGTTGGCACACACCCTTAGTTCCAGCTTTCGAGGGGCTGGTGGACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGGCACACACCCTTAGTTCCAGCTTTCGAGGGGCTGGTGGACCT  994

seq1  GAGTTTGAGGCCAGTCTTTTCTACACAGCAAGTTAAGGTTAGCTAGAGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAGGCCAGTCTTTTCTACACAGCAAGTTAAGGTTAGCTAGAGCT  1044

seq1  AGCCAAAATTGTTTTGTTTCTGGGACAGGATTTCTCTGTGTAGTCTTGGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAATTGTTTTGTTTCTGGGACAGGATTTCTCTGTGTAGTCTTGGC  1094

seq1  TATACAGGAATTC  1111
      |||||||||||||
seq2  TATACAGGAATTC  1107