BAC Information

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BAC

Clone NameB6Ng01-200C13
Chromosome3 (Build37)
Map Location 40,517,611 - 40,647,920
singlet/doubletdoublet
Overlap geneSlc25a31, Hspa4l, Plk4, Mfsd8
Upstream geneLOC100041443, LOC100041458, LOC100040882, Intu
Downstream geneLOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200C13.bB6Ng01-200C13.g
ACCGA021298GA021299
length1,0111,176
definitionB6Ng01-200C13.b B6Ng01-200C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,646,926 - 40,647,920)(40,517,611 - 40,518,800)
sequence
gaattccatcaggaaaatgaatgccaggatacagcagaactagtagatag
aaggtaaacgttaaacaaatccccttggaaagaagtacagcattttttgc
ttgtttgtttgtttgttttaggttttgtttgtttgtttagacagggtctc
actatgtagccctggctggcctggaactactatgtacatggcttctacct
tcaaactcacagagatcctgctgtctctgccccctaagtgctgggatgaa
aggcatgcgccatgacacccaggttcagtttttcttcttacaaccctgta
aagcagaagtctgtaaagctcagcctcagccatctaacatatgtgtcatc
aaaataaaaaacgtatgctaattcagtaaatcaacatccatattctgtta
ttccttctaaattaaaaaagagcattatgggggggggggctagagaaatg
acacaacggttaagagagcagactgttcttacaaaggtcctgagttctaa
tcccagcaaccacactgtggatctgtaatgagatctgatgccctattctg
aagggtctgaaaatgtgtacttacatataataataaataaataaatctaa
aaaaagcgtaatatatacttattactttaaaagatttcaaatacatggaa
agattgaaataatttacctaataccaattagtttttcttcccaattagtt
tatcttcaccagtcaattgtctttacacacacacacatctaatgctaaag
taaagtaagtttcagatattacgaatatgttattgcagtctgccttttcc
aaggaacaaatacatcccttacaaaaactccaccaatataatttagaaac
accaattaaaggagtatcatacaatttaatactgttgtttccattgttct
ctcctagtagctctaataaatgcaatgaacaccatacattacctccatac
aagccaagtattgttcatggtgttggttccatcctgttttgacttctagt
tttagaactgt
gaattcaatatgtagatcaggctagctccaaactaagagatctgcctatc
tctacctcctgagtgctgggattaaaggcatgcaccaccacatcaggctt
ataactaaaaatttaaaaatagaatgcctatatagcaattggaacaccat
gatgatagtccaagggcctaccaaggtgacatttggaggcctgtttcaaa
ataggtgaccagtctttaacttatctgcttcaaatatttaagtgaagtat
tcaagtctggctgtgcttttcaaagctaatgtaattgtatcttaagtatt
tgtcaggctttttttctgaaacttgaaataattgtgtttttttttttatt
ttaaaaatatacctcttgaagtatgacttttgtaacatgaattaattttt
gttttcctggtcctcattatctttaccttccaagatgtaatcataagcag
aacttggagaatgttctgtccttccatgtgaatcattgttacctgcatca
ggatagcctgtgctgaggggtggttcccagcaggaagagggttgctacct
agaggcagttttgaaactttatgggggaaattttatatgtacagttcaga
ggaatatacttgtatgtcaaatagcatgaaaggcaaggaagggtcagaag
gacttctgcaagttcaaggaccgccttcactgctgcatagtaaaatcttt
cagaaagaaaggcaaaattagttataccattaattacaaattaattcact
cagggtcttgtgatgatttaaacatatttttgtcatgaaaattttcattt
gtatttagtatgttaacaaaagctacgagattctgtaaatttttttggtg
aaatgaacatctggtgcagaaatcattattacagaattccaacaagtaat
tcatgatctgaattagacatttccaaagtgatcattagtgtgtatatgag
ccgtgtactcattctagctacctattttttgcttcagacaaggtgtcctc
ggattgactgccaagtcttatgactgatcacagttcctggaatccagttc
tcatgtctgggaaacagaacctagctagtctccaactcagtttgcaggct
tgtcatgagtcattctggcctagcctatcagtctctgacacagtcaagca
actaaccaattctctagcatgtataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40646926_40647920
seq2: B6Ng01-200C13.b_47_1057 (reverse)

seq1  ACAGTTCT-AAACTAGAGTTCAAAACAGGATGGAACCAACA-CATGAACA  48
      |||||||| ||||||||  |||||||||||||||||||||| ||||||||
seq2  ACAGTTCTAAAACTAGAAGTCAAAACAGGATGGAACCAACACCATGAACA  50

seq1  ATACTTGGCTTGTAT-GAG--TATGTAT-GTGTTCATTGCA-TTATTAGA  93
      ||||||||||||||| |||   |||||| |||||||||||| ||||||||
seq2  ATACTTGGCTTGTATGGAGGTAATGTATGGTGTTCATTGCATTTATTAGA  100

seq1  GCTACTA-GAGA-AACAATGGAA--CACAGTA-TAAATTGTATAATACTC  138
      ||||||| |||| ||||||||||   |||||| |||||||||| ||||||
seq2  GCTACTAGGAGAGAACAATGGAAACAACAGTATTAAATTGTATGATACTC  150

seq1  C-TTAATTGGTGTTTCT-AATTATATTGGTGGAG-TTTTGTAAGGGATGT  185
      | ||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  CTTTAATTGGTGTTTCTAAATTATATTGGTGGAGTTTTTGTAAGGGATGT  200

seq1  ATTTGTT-CTTGGAAAAGGCAGACTGCAATAACATATTCGTAATATCTGA  234
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCCTTGGAAAAGGCAGACTGCAATAACATATTCGTAATATCTGA  250

seq1  AACTTACTTTACTTTAGCATTAGATGTGTGTGTGTGTAAAGACAATTGAC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACTTTACTTTAGCATTAGATGTGTGTGTGTGTAAAGACAATTGAC  300

seq1  TGGTGAAGATAAACTAATTGGGAAGAAAAACTAATTGGTATTAGGTAAAT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGATAAACTAATTGGGAAGAAAAACTAATTGGTATTAGGTAAAT  350

seq1  TATTTCAATCTTTCCATGTATTTGAAATCTTTTAAAGTAATAAGTATATA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAATCTTTCCATGTATTTGAAATCTTTTAAAGTAATAAGTATATA  400

seq1  TTACGCTTTTTTTAGATTTATTTATTTATTATTATATGTAAGTACACATT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCTTTTTTTAGATTTATTTATTTATTATTATATGTAAGTACACATT  450

seq1  TTCAGACCCTTCAGAATAGGGCATCAGATCTCATTACAGATCCACAGTGT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCCTTCAGAATAGGGCATCAGATCTCATTACAGATCCACAGTGT  500

seq1  GGTTGCTGGGATTAGAACTCAGGACCTTTGTAAGAACAGTCTGCTCTCTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGGATTAGAACTCAGGACCTTTGTAAGAACAGTCTGCTCTCTT  550

seq1  AACCGTTGTGTCATTTCTCTAGCCCCCCCCCCCATAATGCTCTTTTTTAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTTGTGTCATTTCTCTAGCCCCCCCCCCCATAATGCTCTTTTTTAA  600

seq1  TTTAGAAGGAATAACAGAATATGGATGTTGATTTACTGAATTAGCATACG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGGAATAACAGAATATGGATGTTGATTTACTGAATTAGCATACG  650

seq1  TTTTTTATTTTGATGACACATATGTTAGATGGCTGAGGCTGAGCTTTACA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTGATGACACATATGTTAGATGGCTGAGGCTGAGCTTTACA  700

seq1  GACTTCTGCTTTACAGGGTTGTAAGAAGAAAAACTGAACCTGGGTGTCAT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGCTTTACAGGGTTGTAAGAAGAAAAACTGAACCTGGGTGTCAT  750

seq1  GGCGCATGCCTTTCATCCCAGCACTTAGGGGGCAGAGACAGCAGGATCTC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCATGCCTTTCATCCCAGCACTTAGGGGGCAGAGACAGCAGGATCTC  800

seq1  TGTGAGTTTGAAGGTAGAAGCCATGTACATAGTAGTTCCAGGCCAGCCAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTGAAGGTAGAAGCCATGTACATAGTAGTTCCAGGCCAGCCAG  850

seq1  GGCTACATAGTGAGACCCTGTCTAAACAAACAAACAAAACCTAAAACAAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATAGTGAGACCCTGTCTAAACAAACAAACAAAACCTAAAACAAA  900

seq1  CAAACAAACAAGCAAAAAATGCTGTACTTCTTTCCAAGGGGATTTGTTTA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAGCAAAAAATGCTGTACTTCTTTCCAAGGGGATTTGTTTA  950

seq1  ACGTTTACCTTCTATCTACTAGTTCTGCTGTATCCTGGCATTCATTTTCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTACCTTCTATCTACTAGTTCTGCTGTATCCTGGCATTCATTTTCC  1000

seq1  TGATGGAATTC  995
      |||||||||||
seq2  TGATGGAATTC  1011

seq1: chr3_40517611_40518800
seq2: B6Ng01-200C13.g_69_1244

seq1  GAATTCAATATGTAGATCAGGCTAGCTCCAAACTAAGAGATCTGCCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGTAGATCAGGCTAGCTCCAAACTAAGAGATCTGCCTATC  50

seq1  TCTACCTCCTGAGTGCTGGGATTAAAGGCATGCACCACCACATCAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCCTGAGTGCTGGGATTAAAGGCATGCACCACCACATCAGGCTT  100

seq1  ATAACTAAAAATTTAAAAATAGAATGCCTATATAGCAATTGGAACACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAAAAATTTAAAAATAGAATGCCTATATAGCAATTGGAACACCAT  150

seq1  GATGATAGTCCAAGGGCCTACCAAGGTGACATTTGGAGGCCTGTTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAGTCCAAGGGCCTACCAAGGTGACATTTGGAGGCCTGTTTCAAA  200

seq1  ATAGGTGACCAGTCTTTAACTTATCTGCTTCAAATATTTAAGTGAAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGACCAGTCTTTAACTTATCTGCTTCAAATATTTAAGTGAAGTAT  250

seq1  TCAAGTCTGGCTGTGCTTTTCAAAGCTAATGTAATTGTATCTTAAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTGGCTGTGCTTTTCAAAGCTAATGTAATTGTATCTTAAGTATT  300

seq1  TGTCAGGCTTTTTTTCTGAAACTTGAAATAATTGTGTTTTTTTTTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCTTTTTTTCTGAAACTTGAAATAATTGTGTTTTTTTTTTTATT  350

seq1  TTAAAAATATACCTCTTGAAGTATGACTTTTGTAACATGAATTAATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATATACCTCTTGAAGTATGACTTTTGTAACATGAATTAATTTTT  400

seq1  GTTTTCCTGGTCCTCATTATCTTTACCTTCCAAGATGTAATCATAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTGGTCCTCATTATCTTTACCTTCCAAGATGTAATCATAAGCAG  450

seq1  AACTTGGAGAATGTTCTGTCCTTCCATGTGAATCATTGTTACCTGCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGAGAATGTTCTGTCCTTCCATGTGAATCATTGTTACCTGCATCA  500

seq1  GGATAGCCTGTGCTGAGGGGTGGTTCCCAGCAGGAAGAGGGTTGCTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCTGTGCTGAGGGGTGGTTCCCAGCAGGAAGAGGGTTGCTACCT  550

seq1  AGAGGCAGTTTTGAAACTTTATGGGGGAAATTTTATATGTACAGTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGTTTTGAAACTTTATGGGGGAAATTTTATATGTACAGTTCAGA  600

seq1  GGAATATACTTGTATGTCAAATAGCATGAAAGGCAAGGAAGGGTCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATACTTGTATGTCAAATAGCATGAAAGGCAAGGAAGGGTCAGAAG  650

seq1  GACTTCTGCAAGTTCAAGGACCGCCTTCACTGCTGCATAGTAAAATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGCAAGTTCAAGGACCGCCTTCACTGCTGCATAGTAAAATCTTT  700

seq1  CAGAAAGAAAGGCAAAATTAGTTATACCATTAATTACAAATTAATTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAAGGCAAAATTAGTTATACCATTAATTACAAATTAATTCACT  750

seq1  CAGGGTCTTGTGATGATTTAAACATATTTTTGTCATGAAAATTTTCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTTGTGATGATTTAAACATATTTTTGTCATGAAAATTTTCATTT  800

seq1  GTATTTAGTATGTTAACAAAAGCTACGAGATTCTGTAAATTTTTTTGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGTATGTTAACAAAAGCTACGAGATTCTGTAAATTTTTTTGGTG  850

seq1  AAATGAACATCTGGTGCAGAAATCATTATTACAGAATTCCAACAAGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACATCTGGTGCAGAAATCATTATTACAGAATTCCAACAAGTAAT  900

seq1  TCATGATCTGAATTAGACATTTCCAAAGTGATCATTAGTGTGTATATGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCTGAATTAGACATTTCCAAAGTGATCATTAGTGTGTATATGAG  950

seq1  CCGTGTACTCATTCTAGCTACCTA-TTTTTGCTTCAGACAAGGTGTCCTC  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCGTGTACTCATTCTAGCTACCTATTTTTTGCTTCAGACAAGGTGTCCTC  1000

seq1  GGATTGACTGCCCAAGTCTGGTTGACTGATCACAAGTTCCTGG-ATCCAG  1048
      |||||||||| ||||||||   ||||||||||| ||||||||| ||||| 
seq2  GGATTGACTG-CCAAGTCT-TATGACTGATCAC-AGTTCCTGGAATCCA-  1046

seq1  GTTCTCATGTCTGGGAAACAGAAACTTAGGCCTAGTCTCCCAAACTTCCA  1098
      ||||||||||||||||||||| ||| |||  |||||||||  ||||  ||
seq2  GTTCTCATGTCTGGGAAACAG-AACCTAG--CTAGTCTCC--AACT--CA  1089

seq1  GTTTGCA-GCCTGTCATGGAGTCATCCTGGCTCTAGCTAATTCAGTCCTC  1147
      ||||||| || |||||| ||||||| ||||| |||||  | ||||| |||
seq2  GTTTGCAGGCTTGTCAT-GAGTCATTCTGGC-CTAGCCTA-TCAGT-CTC  1135

seq1  TCACCACAATCAAGCAAACTAACACATTCCTCAGCATGTATAA  1190
      | | |||| |||||| |||||||  ||||   |||||||||||
seq2  TGA-CACAGTCAAGC-AACTAACCAATTCTCTAGCATGTATAA  1176