BAC Information

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BAC

Clone NameB6Ng01-200G12
Chromosome3 (Build37)
Map Location 91,535,373 - 91,660,513
singlet/doubletdoublet
Overlap geneLOC100042463
Upstream genePglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200G12.bB6Ng01-200G12.g
ACCGA021476GA021477
length8791,173
definitionB6Ng01-200G12.b B6Ng01-200G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,535,373 - 91,535,961)(91,659,370 - 91,660,513)
sequence
gaattctcccaacatgaatcctgagccacttccaccaaggatagttgtgt
agaagaattacaacttttgaggtgagctcccaatttacccgaacttggtg
gaaggtttcaaggtctcagaggaccccccactccacagagcccctagaaa
acccaacgtattaggatcactagactaagaagttgattagtgctacaggc
ttctggacaccttcactgcaagaagagagattgcctgcagagtgtgccct
gacctctgggactcagttgaaaatgggactcccaggagtgctaacagagg
ctaacagaatcacaggaggaacaagctccagccagagacaattataacaa
ttaatgccagatgcagagaaaccttgcctcataaaaacaaaaaaacaaac
aaacaaaaaacctaacgccagagtttagcagatgccaaaaggcaagcata
agaaaccaataacactcaacagaacctggtacacccagcacagcaagttc
tagataccccaacacatctgaaaagcaagattcagatttaaaatcctatc
tcatgatgatggtagaaaattttaagaagccatttataactcacataaag
aagtgcaggagaatgctgtgaaagaatgggaagcccttaaagaattacag
gaaaacactgctacgcacgtataagtccttaaaaaggaaacacaaaaagc
ccttaaagaattataggaaaacaagtaatggaattgaacaaaagcatcca
agatccaaaaatgaagaagaaacaaaaaagaaaacgaaagggaaacaaca
ctagagatagaaatcctagaaaataataaggagccatagatatgagtatc
agcagcacatacacgagatgaaagagaaa

gaattcattgggggcaagttgtgtgcagctgagcaagtgctgtgtatgat
aatcttctgttgtttgctggacaattagtgaggacatgggaatgaaaggg
tctgtatctcaagagtgtgtatgaatgaattgtaatattgaacaatcttg
gcatatgttctataaggactagcactaatgttcatttccaagggcatgac
actgatacctgaagtgaaatgcagaccagagacatttttagggaattatt
gttacttgctccctgcatcagtcatctcattccaagtgttccaacggagg
gggttttgtggatttgatgggatttcttggccttaagtatacctggagga
caagtttctaagcagtcttctttccaccataaaacacctctaaatatgta
taagacattatcctcaaagaagaagtaatgagataatttatcaaagactc
cctggaattttctgtcttatagagcagtaacacctagaggaagaaaattc
tctctggcctagtctacaactgtcaatttcatttagtggtcctacatttg
gttcctagggttccctgctgtatagtgccctggttcatagaccagtacct
ggcatacaactttcaccagggagagcatacacattttacccagttcacag
ggaattcaatttgttacatggctattgaaaaaatcttataatcaagtatg
tacaatttctaacttatatgatgaatctaggtacccatctacagatgaat
agataaaattttctcttttaagcacccaatatacgtgcggaattttattt
aactctgagactgataaaatcctgttctttgttaggaataacacattgtc
ctgttaaacaaatttaatcagtatgacaagaggaatattgccagttatgt
gcagtaaaataaggtctggaagtaaaagtcaccatttgtaagggaggttt
aaagaaaggtaatggtggtgagcactgggaaaggctaatggaagtgagta
aaaaaatagttaccaagtgccatttttgttataatggatatgtgtgaact
atggaaatccattacttgcattatgtataattccaaacaacagcaattca
tttaaaatctaaaggacgcagttcttcggtgttccctaagatctctgtaa
gtctggctcaattggactaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91535373_91535961
seq2: B6Ng01-200G12.b_45_633

seq1  GAATTCTCCCAACATGAATCCTGAGCCACTTCCACCAAGGATAGTTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAACATGAATCCTGAGCCACTTCCACCAAGGATAGTTGTGT  50

seq1  AGAAGAATTACAACTTTTGAGGTGAGCTCCCAATTTACCCGAACTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATTACAACTTTTGAGGTGAGCTCCCAATTTACCCGAACTTGGTG  100

seq1  GAAGGTTTCAAGGTCTCAGAGGACCCCCCACTCCACAGAGCCCCTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTCAAGGTCTCAGAGGACCCCCCACTCCACAGAGCCCCTAGAAA  150

seq1  ACCCAACGTATTAGGATCACTAGACTAAGAAGTTGATTAGTGCTACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACGTATTAGGATCACTAGACTAAGAAGTTGATTAGTGCTACAGGC  200

seq1  TTCTGGACACCTTCACTGCAAGAAGAGAGATTGCCTGCAGAGTGTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGACACCTTCACTGCAAGAAGAGAGATTGCCTGCAGAGTGTGCCCT  250

seq1  GACCTCTGGGACTCAGTTGAAAATGGGACTCCCAGGAGTGCTAACAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGGGACTCAGTTGAAAATGGGACTCCCAGGAGTGCTAACAGAGG  300

seq1  CTAACAGAATCACAGGAGGAACAAGCTCCAGCCAGAGACAATTATAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGAATCACAGGAGGAACAAGCTCCAGCCAGAGACAATTATAACAA  350

seq1  TTAATGCCAGATGCAGAGAAACCTTGCCTCATAAAAACAAAAAAACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCCAGATGCAGAGAAACCTTGCCTCATAAAAACAAAAAAACAAAC  400

seq1  AAACAAAAAACCTAACGCCAGAGTTTAGCAGATGCCAAAAGGCAAGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACCTAACGCCAGAGTTTAGCAGATGCCAAAAGGCAAGCATA  450

seq1  AGAAACCAATAACACTCAACAGAACCTGGTACACCCAGCACAGCAAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAATAACACTCAACAGAACCTGGTACACCCAGCACAGCAAGTTC  500

seq1  TAGATACCCCAACACATCTGAAAAGCAAGATTCAGATTTAAAATCCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACCCCAACACATCTGAAAAGCAAGATTCAGATTTAAAATCCTATC  550

seq1  TCATGATGATGGTAGAAAATTTTAAGAAGCCATTTATAA  589
      |||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGATGGTAGAAAATTTTAAGAAGCCATTTATAA  589


seq1: chr3_91659370_91660513
seq2: B6Ng01-200G12.g_68_1240 (reverse)

seq1  AGTTTAGTCCAAATTTGAGCCCAGCTCTACAG-GATCTTAGG--ACACAG  47
      ||||||||||||  ||||| ||||   ||||| |||||||||  |||| |
seq2  AGTTTAGTCCAA--TTGAG-CCAGACTTACAGAGATCTTAGGGAACACCG  47

seq1  AAG-ACTGC--TCTTTTGATTTTAATTG-ATTGGTGTTG-TTGGA--TAT  90
      ||| |||||   |||| |||||||| || |||| ||||| |||||  |||
seq2  AAGAACTGCGTCCTTTAGATTTTAAATGAATTGCTGTTGTTTGGAATTAT  97

seq1  TCATTATG-AAGTAATGGGTTT-CATTGT---CACATAT-CATATTAACA  134
       ||| ||| ||||||||| ||| ||| ||   ||||||| |||  |||||
seq2  ACATAATGCAAGTAATGGATTTCCATAGTTCACACATATCCATTATAACA  147

seq1  AAA--TGCACTTG--TACTA--TTTTTACTCACTT-CATTAGCCTTTCCC  177
      |||   |||||||   ||||  ||||||||||||| ||||||||||||||
seq2  AAAATGGCACTTGGTAACTATTTTTTTACTCACTTCCATTAGCCTTTCCC  197

seq1  -GTGCTCAC--ACATT-CCCTTCTTT-AACCTCCC-TACAA--TGTGACT  219
       ||||||||   |||| || |||||| |||||||| |||||   ||||||
seq2  AGTGCTCACCACCATTACCTTTCTTTAAACCTCCCTTACAAATGGTGACT  247

seq1  TTTACTTCCAGACCTTATTTTACTGCACATAACTGGCAATATTCCTCTTT  269
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTACTTCCAGACCTTATTTTACTGCACATAACTGGCAATATTCCTC-TT  296

seq1  GTCATACTGATTAATTTTGTTTAACAGGACAATGTGTTATTCCTAAC-AA  318
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  GTCATACTGATTAAATTTGTTTAACAGGACAATGTGTTATTCCTAACAAA  346

seq1  GAACAGGATTTTATCAGTCTCAGAGTTAAATAAAATTCCGCACGTATATT  368
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGATTTTATCAGTCTCAGAGTTAAATAAAATTCCGCACGTATATT  396

seq1  GGGTGCTTAAAAGAGAAAATTTTATCTATTCATCTGTAGATGGGTACCTA  418
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTAAAAGAGAAAATTTTATCTATTCATCTGTAGATGGGTACCTA  446

seq1  GATTCATCATATAAGTTAGAAATTGTACATACTTGATTATAAGATTTTTT  468
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATCATATAAGTTAGAAATTGTACATACTTGATTATAAGATTTTTT  496

seq1  CAATAGCCATGTAACAAATTGAATTCCCTGTGAACTGGGTAAAATGTGTA  518
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCCATGTAACAAATTGAATTCCCTGTGAACTGGGTAAAATGTGTA  546

seq1  TGCTCTCCCTGGTGAAAGTTGTATGCCAGGTACTGGTCTATGAACCAGGG  568
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCCTGGTGAAAGTTGTATGCCAGGTACTGGTCTATGAACCAGGG  596

seq1  CACTATACAGCAGGGAACCCTAGGAACCAAATGTAGGACCACTAAATGAA  618
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATACAGCAGGGAACCCTAGGAACCAAATGTAGGACCACTAAATGAA  646

seq1  ATTGACAGTTGTAGACTAGGCCAGAGAGAATTTTCTTCCTCTAGGTGTTA  668
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGTTGTAGACTAGGCCAGAGAGAATTTTCTTCCTCTAGGTGTTA  696

seq1  CTGCTCTATAAGACAGAAAATTCCAGGGAGTCTTTGATAAATTATCTCAT  718
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTATAAGACAGAAAATTCCAGGGAGTCTTTGATAAATTATCTCAT  746

seq1  TACTTCTTCTTTGAGGATAATGTCTTATACATATTTAGAGGTGTTTTATG  768
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTCTTTGAGGATAATGTCTTATACATATTTAGAGGTGTTTTATG  796

seq1  GTGGAAAGAAGACTGCTTAGAAACTTGTCCTCCAGGTATACTTAAGGCCA  818
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGAAGACTGCTTAGAAACTTGTCCTCCAGGTATACTTAAGGCCA  846

seq1  AGAAATCCCATCAAATCCACAAAACCCCCTCCGTTGGAACACTTGGAATG  868
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCCATCAAATCCACAAAACCCCCTCCGTTGGAACACTTGGAATG  896

seq1  AGATGACTGATGCAGGGAGCAAGTAACAATAATTCCCTAAAAATGTCTCT  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTGATGCAGGGAGCAAGTAACAATAATTCCCTAAAAATGTCTCT  946

seq1  GGTCTGCATTTCACTTCAGGTATCAGTGTCATGCCCTTGGAAATGAACAT  968
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCATTTCACTTCAGGTATCAGTGTCATGCCCTTGGAAATGAACAT  996

seq1  TAGTGCTAGTCCTTATAGAACATATGCCAAGATTGTTCAATATTACAATT  1018
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTAGTCCTTATAGAACATATGCCAAGATTGTTCAATATTACAATT  1046

seq1  CATTCATACACACTCTTGAGATACAGACCCTTTCATTCCCATGTCCTCAC  1068
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATACACACTCTTGAGATACAGACCCTTTCATTCCCATGTCCTCAC  1096

seq1  TAATTGTCCAGCAAACAACAGAAGATTATCATACACAGCACTTGCTCAGC  1118
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCCAGCAAACAACAGAAGATTATCATACACAGCACTTGCTCAGC  1146

seq1  TGCACACAACTT-CCCCCAATGAATTC  1144
      |||||||||||| ||||||||||||||
seq2  TGCACACAACTTGCCCCCAATGAATTC  1173


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