BAC Information

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BAC

Clone NameB6Ng01-201H16
Chromosome3 (Build37)
Map Location 98,220,668 - 98,221,502
singlet/doubletsinglet
Overlap geneZfp697
Upstream geneChd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh
Downstream geneLOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201H16.bB6Ng01-201H16.g
ACCGA022238GA022239
length1,224837
definitionB6Ng01-201H16.b B6Ng01-201H16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcatctctccagtttagcaatttggagctttgttttaggttat
tgacataaccaattccttgaaggtgagtaagcatattagacaaaggccaa
gttgaaagccaatcttgtcctctaataattgttacatcagttccagtatc
tattaatccttcagagccttttccttcaattgtcaatttaagtttaggtc
tctgattagtaatagattgaacccaatacacatcagaggaaccaaaggca
ccttgtcctctctcattcttaacaaatctggagacatctgggcaccttcc
ctgccagaggagaggtgtccacccggcccgggagggaattaccgagcatc
tgcaggagacatcttggttcccagactccacctagactagtctgcacagg
tgagagtgtggactacagaagctaacagcttctaggacaggtcctgtttt
gagccttcatcttctgccaggaggcaagtctgaatgccagatatctgtgc
accttccctgaaagaggagagcctgcctgcagagagtgctctgaccactg
aaactcaggagagagctagtttcccaggtctgctggtagagaataacaga
atcacgagaggaacaagctctaaccagagacaactataacaactgactcc
agagtttaccagatggcaaaaggcagacgtaagaatcttactaacagaaa
ccaagaccactcaccattattagaacccagcactctcacctcagccagtc
cagggcaccccaacacacccgaaaacctagacccggatttaaaggcatat
ctcatgataatggtagaagacatcaagaaggtctttaataactcacttta
aagaaatacaggagaacactgctaaagagttgcaagtccttttagaaaaa
cagggaaaacatatccaaacaggtgatgggaatgacaaaaaccatactag
acctaaaaagggaagtagacaccataaaagaaaacccaaaggtgaggcaa
cgctggagatagaaaaccctaagaaagaaagctgggaaccagagatgtga
gcaatagcaacagaatacaagagatggagaagagaatctccaagtgtgca
gaggatcataggcaccctggtacaataaataagcatgcaaaatgccaaag
gatcctaattcacattccagaactagaaccattgagagaccaacctatgc
tatacaggagattgtatgtgaacg
gaattcagggccccccactggctatgttgtctttgggctcccctctccag
gtgaaagggcattaactacagatcagaaaccagattattctggcttcttc
tgtctggagagtggtcagtatttagttgcaggcgtgttttgctgttcttt
gtctggaactcaggtccaccttgctcagcagtctgcactcgggtctctgg
catggaggggtgggtggtctgtgaaagccagccaaggtgagggtccattg
gcacctgtgaatgtgacacatgggaggagggtgacaaagctgctgttcct
tgttcaccagagacatcatctgtccagtaaggtgagtgactgacttattg
ccctttgagctggccagtaaaggtgcagggctctgagaccatcccctccc
caccaagaagaaatttgactgttaactcttttacttggttgctgatgaag
atggacaaatgattaacccttgcagtccccagttggatctcactgcctgt
cctgaatacagccttttgcatagctgcctggagttgtttttaccagtttc
ttccaaattgggtgtctttgcttggacacatatgcaaactatccctgggg
agagagtggtgggccaggggcgtgggaagcagcagaaagaagcttctaga
ttctgctgctgagtttctggctcaatcttgagaaggtaaggaaggggccc
cccgagatgagtaggagacaggaagggcgcttcggtcttggaggctgctg
aatggagccactcttggcctcctgcccagagagcactttcttttccctga
caagatgtctctgctggcctggccacctgccacctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98220668_98221502
seq2: B6Ng01-201H16.g_69_905

seq1  GAATTCAGGGCCCCCCACTGGCTATGTTGTCTTTGGGCTCCCCTCTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCCCCCCACTGGCTATGTTGTCTTTGGGCTCCCCTCTCCAG  50

seq1  GTGAAAGGGCATTAACTACAGATCAGAAACCAGATTATTCTGGCTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGGCATTAACTACAGATCAGAAACCAGATTATTCTGGCTTCTTC  100

seq1  TGTCTGGAGAGTGGTCAGTATTTAGTTGCAGGCGTGTTTTGCTGTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAGAGTGGTCAGTATTTAGTTGCAGGCGTGTTTTGCTGTTCTTT  150

seq1  GTCTGGAACTCAGGTCCACCTTGCTCAGCAGTCTGCACTCGGGTCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAACTCAGGTCCACCTTGCTCAGCAGTCTGCACTCGGGTCTCTGG  200

seq1  CATGGAGGGGTGGGTGGTCTGTGAAAGCCAGCCAAGGTGAGGGTCCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGGGTGGGTGGTCTGTGAAAGCCAGCCAAGGTGAGGGTCCATTG  250

seq1  GCACCTGTGAATGTGACACATGGGAGGAGGGTGACAAAGCTGCTGTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTGAATGTGACACATGGGAGGAGGGTGACAAAGCTGCTGTTCCT  300

seq1  TGTTCACCAGAGACATCATCTGTCCAGTAAGGTGAGTGACTGACTTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCAGAGACATCATCTGTCCAGTAAGGTGAGTGACTGACTTATTG  350

seq1  CCCTTTGAGCTGGCCAGTAAAGGTGCAGGGCTCTGAGACCATCCCCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGAGCTGGCCAGTAAAGGTGCAGGGCTCTGAGACCATCCCCTCCC  400

seq1  CACCAAGAAGAAATTTGACTGTTAACTCTTTTACTTGGTTGCTGATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAAGAAATTTGACTGTTAACTCTTTTACTTGGTTGCTGATGAAG  450

seq1  ATGGACAAATGATTAACCCTTGCAGTCCCCAGTTGGATCTCACTGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAATGATTAACCCTTGCAGTCCCCAGTTGGATCTCACTGCCTGT  500

seq1  CCTGAATACAGCCTTTTGCATAGCTGCCTGGAGTTGTTTTTACCAGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATACAGCCTTTTGCATAGCTGCCTGGAGTTGTTTTTACCAGTTTC  550

seq1  TTCCAAATTGGGTGTCTTTGCTTGGACACATATGCAAACTATCCCTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATTGGGTGTCTTTGCTTGGACACATATGCAAACTATCCCTGGGG  600

seq1  AGAGAGTGGTGGGCCAGGGGCGTGGGAAGCAGCAGAAAGAAGCTTCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGGTGGGCCAGGGGCGTGGGAAGCAGCAGAAAGAAGCTTCTAGA  650

seq1  TTCTGCTGCTGAGTTTCTGGCTCAATCTTGAGAAGGTAAGGAAGGGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGCTGAGTTTCTGGCTCAATCTTGAGAAGGTAAGGAAGGGGCCC  700

seq1  CCCGAGATGAGTAGGAGACAGGAAGGGCGCTTCGGTC-TGGAGGCTGCTG  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCGAGATGAGTAGGAGACAGGAAGGGCGCTTCGGTCTTGGAGGCTGCTG  750

seq1  AATGGAGCCACTCTTGGCCTCCTGCCCAGAGAGCAC-TTCCTTTCCCTGA  798
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  AATGGAGCCACTCTTGGCCTCCTGCCCAGAGAGCACTTTCTTTTCCCTGA  800

seq1  CAAGATGTCTCTGCTGGCCTGGCCACCTGCCACCTGG  835
      |||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTCTCTGCTGGCCTGGCCACCTGCCACCTGG  837