BAC Information

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BAC

Clone NameB6Ng01-202J19
Chromosome3 (Build37)
Map Location 117,420,801 - 117,637,575
singlet/doubletdoublet
Overlap geneEG668759, Snx7, LOC100043260
Upstream geneAgl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202J19.bB6Ng01-202J19.g
ACCGA023060GA023061
length1,1061,107
definitionB6Ng01-202J19.b B6Ng01-202J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,636,467 - 117,637,575)(117,420,801 - 117,421,907)
sequence
gaattccaattcctggtacctgcctgcttctagcctatatcaaggcaaat
aataattgtccagcagagtgcctggatcagagtgtcctagtacgcgatgc
tttcctctgactgtgttcaaagctcacagtaccattatgaatggaggcta
gaggaaggaatggatagaagacaaataagttaattccagaaactggttca
ttagtttgttggtagagaagacctctcttgcctttagactttatacttct
gagaaatattttgaattaaaattcagaaaatgtttactttaataggcctc
atatttttcctccttagtcattaaactgctcatcatctatctcttgtccc
aaaatcttgagtcttttggccctcctgtctgtaggacataagtgtgaagg
tccctccattctattcattactactgtctattatttagcttgtaaacttt
tgattagatgactactccattatccattgcctttgcatatttaggtcatc
ttttttctttcctctcagcaagaagcaagagggacaggacgggtttttat
ttgatatagcaagagacctcagtctccaatttctggaagagcacataaac
atagctgcttggaatatgtcccccgtcatcattatttagttttacaaaat
tgggaaaaacaaacaaacaatagttccaagctgcaagttcgtgaggtgta
aaaactaattgtgtatactaatgtatactaattgtgtgtacttaaaaagg
tatttaaattgtaaatggatttaccagcatgaaaatcaaagtaattaaaa
cataaaattttctgtttattacataccttctctttacagtataattctat
taaagtaagaaataaagaaaatcttctactggcaaagtttatctttatta
aatgctattattttcattaaatctagtattataataacatttatgctgga
cagttttgtgtgaacttgacacagtctatagtcattgagaggagggaacc
ttgatgaagaaaatgcctctgtagatcaggctccaggtaaccaatatagg
gcatgtctaattagtgattgaacaggaggccagtcaagtgtggattgcac
agtcca

gaattcccaacatccctggcatggatattgttgaactacccagcttgtat
cctgtaagctagtctaatagagtcctcttgcaatatgtatttatcttgtc
catcctgtcactttttaaaaagttgatgaatgaaagcagcaggtaaacgt
ataccttaagagaagaaaaatcttcaagaaagagcaaaataagaaaacaa
aaaccaaaaacagggaaaaaaaacccaacttgttaactttgtggctttgt
cttaaaagcctccctacacctactgtaaaattcaagaatgtgctttgaac
aagtgccttccaaagactgcaatctgtgaaaaaagaaaatattcataaag
gactcttctttaatcaaatctatttaacaatgccaggcctcctgcacttt
ctcccaaaattctaatgtttttaattcaaggaattaagttgtgattccag
catttgctgagtaaccatgtattgatgatgtgcagtaaaactgatcacca
aactcatgttcaacattaaatgaaattgaagtatcattttgtatttgttt
cttctggagatgaatttcaatgcaatttgttttatgccattgatgccccc
ctccagtgataataacatgcctggtacacagaattttttacaacacactt
cacagaattgtctcaagtgacccatacaatgctcctgtgagatagaaaag
acaattcttattttaagtttgtgtttgaagaaccatccaactatgcatga
cagaggagtgacagaaaatccctagttaattttcttaccagtgcttcatt
ttctattctgttacatattagagagcaaagagttattagaaaaataagtg
acatgtttattcctttaaattttcccttttaacaaagtgccttcatattc
ccttcactgtgcctacatggtgaaatagatgtaaatcccatcttgaaaag
gttcattgcccagcagaacagagaaagaagttgcagttttccagaatgat
gtgaagatggtatctaagttgactaccatgttagagtaccagatagcaat
ggacctcctcatctatgactgcagcatagacggtatccaagggtggtgac
tcaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117636467_117637575
seq2: B6Ng01-202J19.b_50_1155 (reverse)

seq1  TGGACTGTGCAACCCACACTGGACTGGGCCCTCCTG-TCAATCACTAATT  49
      |||||||||||| ||||||| ||||||  ||||||| |||||||||||||
seq2  TGGACTGTGCAATCCACACTTGACTGG--CCTCCTGTTCAATCACTAATT  48

seq1  AAGAACATGCCCTATA-TGGTTACCTGGAGCCTGATCTTACAGAGGCATT  98
      |   |||||||||||| |||||||||||||||||||| ||||||||||||
seq2  A--GACATGCCCTATATTGGTTACCTGGAGCCTGATC-TACAGAGGCATT  95

seq1  TTCTTCATCAAGGTTCCCTCCTCTCAAATGACTATAGACTGTGTCAAGTT  148
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTTCATCAAGGTTCCCTCCTCTC-AATGACTATAGACTGTGTCAAGTT  144

seq1  CACACAAAACTGTCCAGCATAAATGTTATTATAATACTAGATTTAATGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAACTGTCCAGCATAAATGTTATTATAATACTAGATTTAATGAA  194

seq1  AATAATAGCA-TTAATAAAGATAAACTTTGCCAGTAGAAGATTTTCTTTA  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGCATTTAATAAAGATAAACTTTGCCAGTAGAAGATTTTCTTTA  244

seq1  TTTCTTACTTTAATAGAATTATACTGTAAAGAGAAGGTATGTAATAAACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACTTTAATAGAATTATACTGTAAAGAGAAGGTATGTAATAAACA  294

seq1  GAAAATTTTATGTTTTAATTACTTTGATTTTCATGCTGGTAAATCCATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTTATGTTTTAATTACTTTGATTTTCATGCTGGTAAATCCATTT  344

seq1  ACAATTTAAATACCTTTTTAAGTACACACAATTAGTATACATTAGTATAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAAATACCTTTTTAAGTACACACAATTAGTATACATTAGTATAC  394

seq1  ACAATTAGTTTTTACACCTCACGAACTTGCAGCTTGGAACTATTGTTTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAGTTTTTACACCTCACGAACTTGCAGCTTGGAACTATTGTTTGT  444

seq1  TTGTTTTTCCCAATTTTGTAAAACTAAATAATGATGACGGGGGACATATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCCCAATTTTGTAAAACTAAATAATGATGACGGGGGACATATT  494

seq1  CCAAGCAGCTATGTTTATGTGCTCTTCCAGAAATTGGAGACTGAGGTCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGCTATGTTTATGTGCTCTTCCAGAAATTGGAGACTGAGGTCTC  544

seq1  TTGCTATATCAAATAAAAACCCGTCCTGTCCCTCTTGCTTCTTGCTGAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATATCAAATAAAAACCCGTCCTGTCCCTCTTGCTTCTTGCTGAGA  594

seq1  GGAAAGAAAAAAGATGACCTAAATATGCAAAGGCAATGGATAATGGAGTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAAAAGATGACCTAAATATGCAAAGGCAATGGATAATGGAGTA  644

seq1  GTCATCTAATCAAAAGTTTACAAGCTAAATAATAGACAGTAGTAATGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTAATCAAAAGTTTACAAGCTAAATAATAGACAGTAGTAATGAAT  694

seq1  AGAATGGAGGGACCTTCACACTTATGTCCTACAGACAGGAGGGCCAAAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAGGGACCTTCACACTTATGTCCTACAGACAGGAGGGCCAAAAG  744

seq1  ACTCAAGATTTTGGGACAAGAGATAGATGATGAGCAGTTTAATGACTAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGATTTTGGGACAAGAGATAGATGATGAGCAGTTTAATGACTAAG  794

seq1  GAGGAAAAATATGAGGCCTATTAAAGTAAACATTTTCTGAATTTTAATTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAATATGAGGCCTATTAAAGTAAACATTTTCTGAATTTTAATTC  844

seq1  AAAATATTTCTCAGAAGTATAAAGTCTAAAGGCAAGAGAGGTCTTCTCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTCTCAGAAGTATAAAGTCTAAAGGCAAGAGAGGTCTTCTCTA  894

seq1  CCAACAAACTAATGAACCAGTTTCTGGAATTAACTTATTTGTCTTCTATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAACTAATGAACCAGTTTCTGGAATTAACTTATTTGTCTTCTATC  944

seq1  CATTCCTTCCTCTAGCCTCCATTCATAATGGTACTGTGAGCTTTGAACAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTCCTCTAGCCTCCATTCATAATGGTACTGTGAGCTTTGAACAC  994

seq1  AGTCAGAGGAAAGCATCGCGTACTAGGACACTCTGATCCAGGCACTCTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGAAAGCATCGCGTACTAGGACACTCTGATCCAGGCACTCTGC  1044

seq1  TGGACAATTATTATTTGCCTTGATATAGGCTAGAAGCAGGCAGGTACCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATTATTATTTGCCTTGATATAGGCTAGAAGCAGGCAGGTACCAG  1094

seq1  GAATTGGAATTC  1109
      ||||||||||||
seq2  GAATTGGAATTC  1106


seq1: chr3_117420801_117421907
seq2: B6Ng01-202J19.g_68_1174

seq1  GAATTCCCAACATCCCTGGCATGGATATTGTTGAACTACCCAGCTTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACATCCCTGGCATGGATATTGTTGAACTACCCAGCTTGTAT  50

seq1  CCTGTAAGCTAGTCTAATAGAGTCCTCTTGCAATATGTATTTATCTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGCTAGTCTAATAGAGTCCTCTTGCAATATGTATTTATCTTGTC  100

seq1  CATCCTGTCACTTTTTAAAAAGTTGATGAATGAAAGCAGCAGGTAAACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTCACTTTTTAAAAAGTTGATGAATGAAAGCAGCAGGTAAACGT  150

seq1  ATACCTTAAGAGAAGAAAAATCTTCAAGAAAGAGCAAAATAAGAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTAAGAGAAGAAAAATCTTCAAGAAAGAGCAAAATAAGAAAACAA  200

seq1  AAACCAAAAACAGGGAAAAAAAACCCAACTTGTTAACTTTGTGGCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAACAGGGAAAAAAAACCCAACTTGTTAACTTTGTGGCTTTGT  250

seq1  CTTAAAAGCCTCCCTACACCTACTGTAAAATTCAAGAATGTGCTTTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGCCTCCCTACACCTACTGTAAAATTCAAGAATGTGCTTTGAAC  300

seq1  AAGTGCCTTCCAAAGACTGCAATCTGTGAAAAAAGAAAATATTCATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTTCCAAAGACTGCAATCTGTGAAAAAAGAAAATATTCATAAAG  350

seq1  GACTCTTCTTTAATCAAATCTATTTAACAATGCCAGGCCTCCTGCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCTTTAATCAAATCTATTTAACAATGCCAGGCCTCCTGCACTTT  400

seq1  CTCCCAAAATTCTAATGTTTTTAATTCAAGGAATTAAGTTGTGATTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAAATTCTAATGTTTTTAATTCAAGGAATTAAGTTGTGATTCCAG  450

seq1  CATTTGCTGAGTAACCATGTATTGATGATGTGCAGTAAAACTGATCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTGAGTAACCATGTATTGATGATGTGCAGTAAAACTGATCACCA  500

seq1  AACTCATGTTCAACATTAAATGAAATTGAAGTATCATTTTGTATTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGTTCAACATTAAATGAAATTGAAGTATCATTTTGTATTTGTTT  550

seq1  CTTCTGGAGATGAATTTCAATGCAATTTGTTTTATGCCATTGATGCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAGATGAATTTCAATGCAATTTGTTTTATGCCATTGATGCCCCC  600

seq1  CTCCAGTGATAATAACATGCCTGGTACACAGAATTTTTTACAACACACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGATAATAACATGCCTGGTACACAGAATTTTTTACAACACACTT  650

seq1  CACAGAATTGTCTCAAGTGACCCATACAATGCTCCTGTGAGATAGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATTGTCTCAAGTGACCCATACAATGCTCCTGTGAGATAGAAAAG  700

seq1  ACAATTCTTATTTTAAGTTTGTGTTTGAAGAACCATCCAACTATGCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTTATTTTAAGTTTGTGTTTGAAGAACCATCCAACTATGCATGA  750

seq1  CAGAGGAGTGACAGAAAATCCCTAGTTAATTTTCTTACCAGTGCTTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGTGACAGAAAATCCCTAGTTAATTTTCTTACCAGTGCTTCATT  800

seq1  TTCTATTCTGTTACATATTAGAGAGCAAAGAGTTATTAGAAAAATAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCTGTTACATATTAGAGAGCAAAGAGTTATTAGAAAAATAAGTG  850

seq1  ACATGTTTATTCCTTTAAATTTTCCCTTTTAACAAAGTGCCTTCATATT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACATGTTTATTCCTTTAAATTTTCCCTTTTAACAAAGTGCCTTCATATTC  900

seq1  CCTTCACTGTGCCTACATGGTGAAATAGATGTAAATCCCATCTTGAAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTGTGCCTACATGGTGAAATAGATGTAAATCCCATCTTGAAAAG  950

seq1  GTTCATTGCCCAGCAGAACAGAGAAAGAAGTTGCAGTTTTCCAGAATGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTGCCCAGCAGAACAGAGAAAGAAGTTGCAGTTTTCCAGAATGAT  1000

seq1  GGTGAAGGATGGTATCTAAG-TGACTACCATGTTAGAGTACCAGATAGCA  1048
       ||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  -GTGAA-GATGGTATCTAAGTTGACTACCATGTTAGAGTACCAGATAGCA  1048

seq1  GTGGAC--TCTCATCTATGACTGCAGGCATTAAGGACGTAT-CAAGGGTG  1095
       |||||   |||||||||||||||| ||||  ||   |||| ||||||||
seq2  ATGGACCTCCTCATCTATGACTGCA-GCAT--AGACGGTATCCAAGGGTG  1095

seq1  GTGACTCAGGCT  1107
      ||||||||||||
seq2  GTGACTCAGGCT  1107


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