BAC Information

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BAC

Clone NameB6Ng01-202K21
Chromosome3 (Build37)
Map Location 39,755,849 - 39,951,760
singlet/doubletdoublet
Overlap genenone
Upstream geneFat4, LOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202K21.bB6Ng01-202K21.g
ACCGA023110GA023111
length1,2121,093
definitionB6Ng01-202K21.b B6Ng01-202K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,755,849 - 39,757,046)(39,950,666 - 39,951,760)
sequence
gaattccataaggtgtgcaaaatttaatcatgaaatttaaaaatatatta
tttaaagccttcaaatccttggaacaaaatcttaatgtagctttatttct
gtggctgttacactttcaaaaaacaatattttaaaaaacaaaacaaaaac
atttctttccaaaaagctgtaatacactacagttagaatcaaatctaagc
gaaagtccatcagaaagatctttatagtatatacgaaagactctgccaag
ctcatccagctagcatctaagacattccaactgcactatccttagtaaag
atgacctgaaccccatttcttgccttcactgctttctccagtctacagct
acatttccaacatgaatagctttcatttgcaatgcaaatcttttcccgta
tatggctgaattattttctatgcagatgaatgacaccgctgtataggagg
tatcaaacctcacccagttttaagtacacttcttgtattgaaagctaaca
gagctgaaagttgaatgggagaaagctcgggctccagtatttactctttt
atttgtgttctgaaagggctgtgtggaagaaatctcatagaaatgtcaga
gcattcctagcagagggaagttaaaggtaggaatagaaaagactgatttg
ctcctgctttgtggcttcataagcagtggatgatgctttcaataggaggg
cccgaggcaatgtcaagtctttaactcctcagaccctgcaaagggcatcc
atcctcctctcactggtccacagaaaaagccttataaagaaatcccctga
gagccgctgaggcagcagcctgggcgggccacagacaaccggccaccatc
cggaccagaggacaggtgtctgcctggcttgggaggcggcctcagcctca
gcagcagtggtcaccatctgggttccgggactccgcgggacctaggaaat
tagtctgaacagttagagggtgcgccagaagaaccggacagcttctggga
cgggccggaagccacagaggccgctgaggcagcagcctgaggcgggccgc
agacaacccggccaccatccgaacaagagggacaggtgtccgcctggctt
cggggagatggccctcagccctcagagcagcggtcacccatcctttggat
ccagactcccttgaccttaggaacttagcctgcacaggtggaaggtcttg
caccacaagaag

gaattcttaacctaggtgggaagccattgtgaattccaaaaataggtaga
gtggaacaaccagggctccttgagtcaggggtggatggtcttggccctca
gctgcacatctttaagcaccccagggtgttttctgcatgattgtgcattc
ctgttccagacacatgggagtttccaaacacaaaacgaggttagaagtcc
ttgcaataatctgtaaacagagagaagagtcagttctaagttacactttc
aagggcaaaggacaattcactccagaagccaggcttagtccccagatttc
cagtcctgaaactatggttggcttcaaaatgtttttttctgaagccttgc
atggacttaaaagtcagggggatttgcctaggtagggagaagctagattg
ttttttgttttctgctatccataattaggtgaaaaacaagatgttcttaa
aaagaatccccagaattctaaaggcagcacaaaatacaatgtgtttggac
cttcatgctaaggattgaaatatttcacatttatttcttcctttatcttt
ataaatcaagaaggactgtgtaactaagatggtcatttaatgagtaagga
aagcagtagaaagcaatccccaactctgctgttacagacagcccaattag
aagggaggacgggtccttggagcttctgcctcatccatggttttctttgt
gtgtttagtatttgttgcttggaggcacatcactccagcagcttcttaga
tattcacaatgtttgactagttgtcctttctagctaacgatgttatgatg
cgtcgtggtactcttatctcatttattccatttccttctggaatttgaca
tttgttcagctacaggagtaaccttttccaattgtgccttgttatacaag
actggagcccttgctaaaccgctgcccttcactgtgttctgtgtacaagg
atatttgaaccatgttacatgaaaaattccacagacctataggcctgtta
gtgtgtgtgtttgtgcaaagatatggactgctttggatgtaaattgattt
tttttctatttaaccgtgtatgtagcctagtaagctccctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39755849_39757046
seq2: B6Ng01-202K21.b_48_1259

seq1  GAATTCCATAAGGTGTGCAAAATTTAATCATGAAATTTAAAAATATATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGGTGTGCAAAATTTAATCATGAAATTTAAAAATATATTA  50

seq1  TTTAAAGCCTTCAAATCCTTGGAACAAAATCTTAATGTAGCTTTATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCCTTCAAATCCTTGGAACAAAATCTTAATGTAGCTTTATTTCT  100

seq1  GTGGCTGTTACACTTTCAAAAAACAATATTTTAAAAAACAAAACAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTTACACTTTCAAAAAACAATATTTTAAAAAACAAAACAAAAAC  150

seq1  ATTTCTTTCCAAAAAGCTGTAATACACTACAGTTAGAATCAAATCTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCCAAAAAGCTGTAATACACTACAGTTAGAATCAAATCTAAGC  200

seq1  GAAAGTCCATCAGAAAGATCTTTATAGTATATACGAAAGACTCTGCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCATCAGAAAGATCTTTATAGTATATACGAAAGACTCTGCCAAG  250

seq1  CTCATCCAGCTAGCATCTAAGACATTCCAACTGCACTATCCTTAGTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCAGCTAGCATCTAAGACATTCCAACTGCACTATCCTTAGTAAAG  300

seq1  ATGACCTGAACCCCATTTCTTGCCTTCACTGCTTTCTCCAGTCTACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGAACCCCATTTCTTGCCTTCACTGCTTTCTCCAGTCTACAGCT  350

seq1  ACATTTCCAACATGAATAGCTTTCATTTGCAATGCAAATCTTTTCCCGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCAACATGAATAGCTTTCATTTGCAATGCAAATCTTTTCCCGTA  400

seq1  TATGGCTGAATTATTTTCTATGCAGATGAATGACACCGCTGTATAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTGAATTATTTTCTATGCAGATGAATGACACCGCTGTATAGGAGG  450

seq1  TATCAAACCTCACCCAGTTTTAAGTACACTTCTTGTATTGAAAGCTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAACCTCACCCAGTTTTAAGTACACTTCTTGTATTGAAAGCTAACA  500

seq1  GAGCTGAAAGTTGAATGGGAGAAAGCTCGGGCTCCAGTATTTACTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAAAGTTGAATGGGAGAAAGCTCGGGCTCCAGTATTTACTCTTTT  550

seq1  ATTTGTGTTCTGAAAGGGCTGTGTGGAAGAAATCTCATAGAAATGTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTCTGAAAGGGCTGTGTGGAAGAAATCTCATAGAAATGTCAGA  600

seq1  GCATTCCTAGCAGAGGGAAGTTAAAGGTAGGAATAGAAAAGACTGATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTAGCAGAGGGAAGTTAAAGGTAGGAATAGAAAAGACTGATTTG  650

seq1  CTCCTGCTTTGTGGCTTCATAAGCAGTGGATGATGCTTTCAATAGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTTTGTGGCTTCATAAGCAGTGGATGATGCTTTCAATAGGAGGG  700

seq1  CCCGAGGCAATGTCAAGTCTTTAACTCCTCAGACCCTGCAAAGGGCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGCAATGTCAAGTCTTTAACTCCTCAGACCCTGCAAAGGGCATCC  750

seq1  ATCCTCCTCTCACTGGTCCACAGAAAAAGCCTTATAAAGAAATCCCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTCTCACTGGTCCACAGAAAAAGCCTTATAAAGAAATCCCCTGA  800

seq1  GAGCCGCTGAGGCAGCAGCCTGGGCGGGCCACAGACAACCGGCCACCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGCTGAGGCAGCAGCCTGGGCGGGCCACAGACAACCGGCCACCATC  850

seq1  CGGACCAGAGGACAGGTGTCTGCCTGGCTTGGGAGGCGGCCTCAGCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCAGAGGACAGGTGTCTGCCTGGCTTGGGAGGCGGCCTCAGCCTCA  900

seq1  GCAGCAGTGGTCACCATCTGGGTTCCGGGACTCCGCGGGACCTAGGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTGGTCACCATCTGGGTTCCGGGACTCCGCGGGACCTAGGAAAT  950

seq1  TAGTCTGAACAGGTTAGAGGGTGCGCCAG-AGAACCGGACAGCTTCTGGG  999
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TAGTCTGAACA-GTTAGAGGGTGCGCCAGAAGAACCGGACAGCTTCTGGG  999

seq1  ACGGG-CGGAAG-CACAGA-GCCGCTGAGGCAGCAGCCTGA-GCGGGCCG  1045
      ||||| |||||| |||||| ||||||||||||||||||||| ||||||||
seq2  ACGGGCCGGAAGCCACAGAGGCCGCTGAGGCAGCAGCCTGAGGCGGGCCG  1049

seq1  CAGACAA-CCGGCCACCATCCGGACCAGA-GGACAGGTGTCCGCCTGGCT  1093
      ||||||| |||||||||||||| || ||| ||||||||||||||||||||
seq2  CAGACAACCCGGCCACCATCCGAACAAGAGGGACAGGTGTCCGCCTGGCT  1099

seq1  --CGGGAGATGG-CCTCAG-CCTCAGGAGCAGCGGTCA-CCATC--TTGG  1136
         ||||||||| |||||| ||||| |||||||||||| |||||  ||||
seq2  TCGGGGAGATGGCCCTCAGCCCTCA-GAGCAGCGGTCACCCATCCTTTGG  1148

seq1  TTCCAGGACTCCCTGGAACTTAGGACTTTAGTCTGCACAGGT-GAGAGTC  1185
       |||| |||||||| || |||||||  |||| |||||||||| ||  |||
seq2  ATCCA-GACTCCCTTGACCTTAGGAACTTAGCCTGCACAGGTGGAAGGTC  1197

seq1  -TGCACCAC-AGAAG  1198
       |||||||| |||||
seq2  TTGCACCACAAGAAG  1212


seq1: chr3_39950666_39951760
seq2: B6Ng01-202K21.g_68_1160 (reverse)

seq1  CTGAGGGAACCTACTAAGCTACATACACTGTTATAATTAGAAAAAAAATT  50
      |||||||| | ||||| ||||||||||| ||  ||| ||||||||||| |
seq2  CTGAGGGAGCTTACTAGGCTACATACACGGT--TAAATAGAAAAAAAA-T  47

seq1  CAATTAACATTCAAAACCAGTCCATATCTTTGCAACAAACACACCACACT  100
      ||||| ||| || ||| |||||||||||||||| ||||||||| ||||||
seq2  CAATTTACA-TCCAAAGCAGTCCATATCTTTGC-ACAAACACA-CACACT  94

seq1  AAACAGG-CTATAGGTCTGTGGAATTTTTCATGTAACATGGTTC-AATAT  148
       |||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  -AACAGGCCTATAGGTCTGTGGAATTTTTCATGTAACATGGTTCAAATAT  143

seq1  CCTTGTACACAGAACACAGTGAA-GGCAGCGGTTTAGC-AGGGCTCCAGT  196
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  CCTTGTACACAGAACACAGTGAAGGGCAGCGGTTTAGCAAGGGCTCCAGT  193

seq1  CTTGTATAACAAGGCACAATTGG-AAAGGTTACTCCTGTAGCTGAACAAA  245
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGTATAACAAGGCACAATTGGAAAAGGTTACTCCTGTAGCTGAACAAA  243

seq1  TGTCAAATTCCAGAAGGAAATGGAATAAATGAGATAAGAGTACCACGACG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATTCCAGAAGGAAATGGAATAAATGAGATAAGAGTACCACGACG  293

seq1  CATCATAACATCGTTAGCTAGAAAGGACAACTAGTCAAACATTGTGAATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAACATCGTTAGCTAGAAAGGACAACTAGTCAAACATTGTGAATA  343

seq1  TCTAAGAAGCTGCTGGAGTGATGTGCCTCCAAGCAACAAATACTAAACAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAAGCTGCTGGAGTGATGTGCCTCCAAGCAACAAATACTAAACAC  393

seq1  ACAAAGAAAACCATGGATGAGGCAGAAGCTCCAAGGACCCGTCCTCCCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAACCATGGATGAGGCAGAAGCTCCAAGGACCCGTCCTCCCTT  443

seq1  CTAATTGGGCTGTCTGTAACAGCAGAGTTGGGGATTGCTTTCTACTGCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGGGCTGTCTGTAACAGCAGAGTTGGGGATTGCTTTCTACTGCTT  493

seq1  TCCTTACTCATTAAATGACCATCTTAGTTACACAGTCCTTCTTGATTTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCATTAAATGACCATCTTAGTTACACAGTCCTTCTTGATTTAT  543

seq1  AAAGATAAAGGAAGAAATAAATGTGAAATATTTCAATCCTTAGCATGAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAAGGAAGAAATAAATGTGAAATATTTCAATCCTTAGCATGAAG  593

seq1  GTCCAAACACATTGTATTTTGTGCTGCCTTTAGAATTCTGGGGATTCTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAACACATTGTATTTTGTGCTGCCTTTAGAATTCTGGGGATTCTTT  643

seq1  TTAAGAACATCTTGTTTTTCACCTAATTATGGATAGCAGAAAACAAAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACATCTTGTTTTTCACCTAATTATGGATAGCAGAAAACAAAAAA  693

seq1  CAATCTAGCTTCTCCCTACCTAGGCAAATCCCCCTGACTTTTAAGTCCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGCTTCTCCCTACCTAGGCAAATCCCCCTGACTTTTAAGTCCAT  743

seq1  GCAAGGCTTCAGAAAAAAACATTTTGAAGCCAACCATAGTTTCAGGACTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTTCAGAAAAAAACATTTTGAAGCCAACCATAGTTTCAGGACTG  793

seq1  GAAATCTGGGGACTAAGCCTGGCTTCTGGAGTGAATTGTCCTTTGCCCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGGGGACTAAGCCTGGCTTCTGGAGTGAATTGTCCTTTGCCCTT  843

seq1  GAAAGTGTAACTTAGAACTGACTCTTCTCTCTGTTTACAGATTATTGCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTAACTTAGAACTGACTCTTCTCTCTGTTTACAGATTATTGCAA  893

seq1  GGACTTCTAACCTCGTTTTGTGTTTGGAAACTCCCATGTGTCTGGAACAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCTAACCTCGTTTTGTGTTTGGAAACTCCCATGTGTCTGGAACAG  943

seq1  GAATGCACAATCATGCAGAAAACACCCTGGGGTGCTTAAAGATGTGCAGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACAATCATGCAGAAAACACCCTGGGGTGCTTAAAGATGTGCAGC  993

seq1  TGAGGGCCAAGACCATCCACCCCTGACTCAAGGAGCCCTGGTTGTTCCAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCAAGACCATCCACCCCTGACTCAAGGAGCCCTGGTTGTTCCAC  1043

seq1  TCTACCTATTTTTGGAATTCACAATGGCTTCCCACCTAGGTTAAGAATTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTATTTTTGGAATTCACAATGGCTTCCCACCTAGGTTAAGAATTC  1093


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