BAC Information

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BAC

Clone NameB6Ng01-202M19
Chromosome3 (Build37)
Map Location 49,477,691 - 49,478,851
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
Downstream genePcdh18, LOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202M19.bB6Ng01-202M19.g
ACCGA023195GA023196
length5001,152
definitionB6Ng01-202M19.b B6Ng01-202M19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctgcattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggacttccatat
cctgggatccaccccataatcagcatccaaacgctgacaccattgcatac
actagcaagattttatcaaaaggacccagatgtagctgtctcttgtgaga
ctatgccggggcctagcaaacacagaagtggatgctcacagtcagctaat
ggatggatcacaggcctcccaatggaggagctagagaaagtacccaagga
gctaaagggatctgcaaccctataggcggaaccacaatatgaactaacca

gaattctgacaaagtgaacatatccacaacagggtagggcttactcatct
atgtctaccctgtatggagaaactcgctcatcacaattttggtttcccat
gatgctctcaatttagtatcttctttccagacattggagcctcccaattg
ttccctaccgtctccacttctgcctttttctcttttctcttttcacatgg
aggtaagcactggtgataccctaccttaccgaacctccctgcctccttcc
atcccttctctctgtagccttgaaggtagttctgattgtctgcaaacaga
ttgttcttctggtatttacccatactttctattttctcacctatcacagg
agcactgtaagagtaatgcaatatataagtaggagcttgtatgtgcgttg
catgtctttacgaaaactcaattattattttacaattgatcagttacagt
ttataattgtaactacctaccattcccacaacatcaacatcaaaatgatt
atttgaatcatttcactttttactttcaaatgtagaaaataaatatcaga
atataagaatacaataaataagtgcattaagacctttcagttcaaaatag
gtgacaaaatttcatctttgaaattcacatataaaggtatcttactgtga
cccaaggacccttagaagaagtctttgttttccacaagtaaaccatcata
ttactattaaatctgagaacatgccgcaaaagcaattttgttggtaacat
aaagtagtcctgaatctgggctatactgtgtgactcatattcattgatgt
tatgtgttagggaataggcatgatagcaagaagtgcctacccagtgctca
agactaactcaaagtataacatatggcacagagcaggcaggcgcagcaag
aaacaccttggagtcattaattttttatttaatgtttgtttactctgcat
tctgaaacctttcttcataatcaaattttctgaaatcctacagttagtta
aatagtcccatgtgaattacagtcacattctagacgtggggctggcatta
ttaaatagctagaaaacatatcagaacaggctaattcatgacattttcaa
ttaggatcttaattatctggttcagtacccaaaatgtccattagtttttt
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49477691_49478851
seq2: B6Ng01-202M19.g_65_1216

seq1  GAATTCTGACAAAGTGAACATATCCACAACAGGGTAGGGCTTACTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACAAAGTGAACATATCCACAACAGGGTAGGGCTTACTCATCT  50

seq1  ATGTCTACCCTGTATGGAGAAACTCGCTCATCACAATTTTGGTTTCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACCCTGTATGGAGAAACTCGCTCATCACAATTTTGGTTTCCCAT  100

seq1  GATGCTCTCAATTTAGTATCTTCTTTCCAGACATTGGAGCCTCCCAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTCAATTTAGTATCTTCTTTCCAGACATTGGAGCCTCCCAATTG  150

seq1  TTCCCTACCGTCTCCACTTCTGCCTTTTTCTCTTTTCTCTTTTCACATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCGTCTCCACTTCTGCCTTTTTCTCTTTTCTCTTTTCACATGG  200

seq1  AGGTAAGCACTGGTGATACCCTACCTTACCGAACCTCCCTGCCTCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCACTGGTGATACCCTACCTTACCGAACCTCCCTGCCTCCTTCC  250

seq1  ATCCCTTCTCTCTGTAGCCTTGAAGGTAGTTCTGATTGTCTGCAAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCTCTCTGTAGCCTTGAAGGTAGTTCTGATTGTCTGCAAACAGA  300

seq1  TTGTTCTTCTGGTATTTACCCATACTTTCTATTTTCTCACCTATCACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTCTGGTATTTACCCATACTTTCTATTTTCTCACCTATCACAGG  350

seq1  AGCACTGTAAGAGTAATGCAATATATAAGTAGGAGCTTGTATGTGCGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTAAGAGTAATGCAATATATAAGTAGGAGCTTGTATGTGCGTTG  400

seq1  CATGTCTTTACGAAAACTCAATTATTATTTTACAATTGATCAGTTACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTACGAAAACTCAATTATTATTTTACAATTGATCAGTTACAGT  450

seq1  TTATAATTGTAACTACCTACCATTCCCACAACATCAACATCAAAATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGTAACTACCTACCATTCCCACAACATCAACATCAAAATGATT  500

seq1  ATTTGAATCATTTCACTTTTTACTTTCAAATGTAGAAAATAAATATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATCATTTCACTTTTTACTTTCAAATGTAGAAAATAAATATCAGA  550

seq1  ATATAAGAATACAATAAATAAGTGCATTAAGACCTTTCAGTTCAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAATACAATAAATAAGTGCATTAAGACCTTTCAGTTCAAAATAG  600

seq1  GTGACAAAATTTCATCTTTGAAATTCACATATAAAGGTATCTTACTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAATTTCATCTTTGAAATTCACATATAAAGGTATCTTACTGTGA  650

seq1  CCCAAGGACCCTTAGAAGAAGTCTTTGTTTTCCACAAGTAAACCATCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGACCCTTAGAAGAAGTCTTTGTTTTCCACAAGTAAACCATCATA  700

seq1  TTACTATTAAATCTGAGAACATGCCGCAAAAGCAATTTTGTTGGTAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTAAATCTGAGAACATGCCGCAAAAGCAATTTTGTTGGTAACAT  750

seq1  AAAGTAGTCCTGAATCTGGGCTATACTGTGTGACTCATATTCATTGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTCCTGAATCTGGGCTATACTGTGTGACTCATATTCATTGATGT  800

seq1  TATGTGTTAGGGAATAGGCATGATAGCAAGAAGTGCCTACCCAGTGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTAGGGAATAGGCATGATAGCAAGAAGTGCCTACCCAGTGCTCA  850

seq1  AGACTAACTCAAAGTATAACATATGGCACAGAGCAGGCAGGCGCAGCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAACTCAAAGTATAACATATGGCACAGAGCAGGCAGGCGCAGCAAG  900

seq1  AAACACCTTGGAGTCATTAATTTTTTATTTAATGTTTGTTTACTCTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTTGGAGTCATTAATTTTTTATTTAATGTTTGTTTACTCTGCAT  950

seq1  TCTGAAACCTTTCTTCATAATCAAAATTTTCTGAAATCCTACAGTTAGTT  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGAAACCTTTCTTCATAATC-AAATTTTCTGAAATCCTACAGTTAGTT  999

seq1  AAATAGTCCAATGTGGAATTACAGTCCACAATTCTAGACGTTGGGGCTGG  1050
      ||||||||| |||| |||||||||| ||| |||||||||| |||||||||
seq2  AAATAGTCCCATGT-GAATTACAGT-CAC-ATTCTAGACG-TGGGGCTGG  1045

seq1  CATTATTAAATAGCTAGAAAACATTAATCAAGACAGCCTA--TCATTGGA  1098
      ||||||||||||||||||||||||  ||||  |||| |||  ||||  ||
seq2  CATTATTAAATAGCTAGAAAACAT--ATCAGAACAGGCTAATTCAT--GA  1091

seq1  CATTTTCAATTTAGATCTTAATTATCTGTTTTCAGGTACCCCCAAAATGT  1148
      |||||||||||  |||||||||||||||  |||| |||  ||||||||||
seq2  CATTTTCAATTAGGATCTTAATTATCTG-GTTCA-GTA--CCCAAAATGT  1137

seq1  CAATAA--TTTTTAG  1161
      | || |  |||||||
seq2  CCATTAGTTTTTTAG  1152