BAC Information

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BAC

Clone NameB6Ng01-203E13
Chromosome3 (Build37)
Map Location 142,166,864 - 142,326,188
singlet/doubletdoublet
Overlap geneGbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605
Upstream geneUnc5c, Bmpr1b, Gabarapl2-ps3, Pdlim5
Downstream geneCcbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203E13.bB6Ng01-203E13.g
ACCGA023541GA023542
length1,1251,172
definitionB6Ng01-203E13.b B6Ng01-203E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,166,864 - 142,167,991)(142,325,015 - 142,326,188)
sequence
gaattcactgaagctgaagcaaggtaacagagcttccttttgggaaaaag
aaagaaaagtacccaggattattttgtttttaataatgcagctaagtata
tcattttccatatttcccctccaagcacttctacaaaataatagtgatta
tttaattgagaatgaactaacaggttcaatattaaattccattagtctca
gttattgaacaaatttctctcttttattgtttcctttgctagttaggttt
aaatctttatgcagtatcaggggaaaggacatttatataaagcatataga
ttaaagtggatataaattgtattatagacaaatcttgtatttccttctct
aggtagcgatgaaagaactcaaacattcaatctaccgcggctgtgcatac
agaagttcttcccagtaaagaaatgctttgtttttgacgctcctgcgctt
ggaagtaagctttcccagcttccaacactcagcaacgaggagctgaactc
agattttgtgcaggacctttcagaattctgttcacacatcttcacccaat
ctaagaccaagactcttccaggaggcatccaggtcaacggacctcgtgag
tactttttaaaaaattttattccaactcatcatagagagtaatggacaca
cagagaatctttgttgatgaattgacaaatgggttagtattagctatgat
ggatattcagtgtactgtgttcagaaatcaatacacttctagtatttgtt
tagtaaaacctcagaggtacatcaagtttaataagaacaaagatgtgaag
tttagagaagcttttactcttgaaacacattaactcacatgggttgacca
catctacacaaggggatttttattatgtgacacagtatttgatgattgca
tcttaatgcagaaccccatgatttagaacgtggcaatgcttactctaaca
tgaatggaatctgcgttaccttcattagaagctggcaaggaagaaaacga
ggcagttctggtgaagaatagatctaggtcactgaatcctatttacagag
gaaattaacctcatgccacctttgatgtgataaaaacaaaacaaaaggga
aaccggtgaatgaaatagaaaactg
gaattccttaaaagtaaaacaaacacaaaacacaaaacaaacacaaatgc
aaaacaaagaaaaatatatgagtgctgactgtaactagatctcttcctct
cttgccagcttttactgacgtcatccttgctccttgacagtgaagttcag
agcagagattttcacctttagatgttaaactactttttcagactgggtta
aagatgacacaaggactaaacatggctcaatgtgaatttgttattggctt
gaatattgaatcagtttgctgacactgggcatgcaatatgatcagataca
ctaattggctctctgtcattaattcattgaagggggatatcactacctta
ttcatgacaggagtaatgttgcaaagttttgagtgtattgcaattcattt
ttatttattgtgattattaataattatctgttactacttcaaaatctagt
cgcagttgcctaatcacaactcccatttgacttgcttttaaaaatctaca
ttccagaaacttgagggaaaaaattacctctaattttgttaggaacactt
ggtcaacatctttgaaggaattttccatgaaaatcttgatggcttctttc
tcactgctcctgtgcaggtccagcagctcctggagggtctctgtgggcag
cttcagactctggctcatctgctggtcatagtgggcaatggcctttcgca
ctgctgctgagttctctgtttctgacagagccaggacagcactctccatg
cagggcagagacccattgctgatggtgttcacataggttgtcaccaaatt
ctttagtcctataaacaggaaacaggtaacaatatttgcaacagatggat
gaagacaagtctattctgtgaaattctagatatgccagtcactagatatg
atgttgtagagcatcagtgtccttagcatcgtttgaaagaatgacaaact
gaagcatcccagcctctgtctcacactgatagattagactttcctcttag
gcaggatcctctcatgagtgcctgcaaccctaagggctagattgcttgat
ggagattcatgggcccgttttctacgatgttgcattcatttaacataagg
cactacgagaacagcctccatacctccttcatggcttctctggcattcgc
aaacctgtgcatagttaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142166864_142167991
seq2: B6Ng01-203E13.b_50_1174

seq1  GAATTCACTGAAGCTGAAGCAAGGTAACAGAGCTTCCTTTTGGGAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAGCTGAAGCAAGGTAACAGAGCTTCCTTTTGGGAAAAAG  50

seq1  AAAGAAAAGTACCCAGGATTATTTTGTTTTTAATAATGCAGCTAAGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGTACCCAGGATTATTTTGTTTTTAATAATGCAGCTAAGTATA  100

seq1  TCATTTTCCATATTTCCCCTCCAAGCACTTCTACAAAATAATAGTGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCCATATTTCCCCTCCAAGCACTTCTACAAAATAATAGTGATTA  150

seq1  TTTAATTGAGAATGAACTAACAGGTTCAATATTAAATTCCATTAGTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGAGAATGAACTAACAGGTTCAATATTAAATTCCATTAGTCTCA  200

seq1  GTTATTGAACAAATTTCTCTCTTTTATTGTTTCCTTTGCTAGTTAGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGAACAAATTTCTCTCTTTTATTGTTTCCTTTGCTAGTTAGGTTT  250

seq1  AAATCTTTATGCAGTATCAGGGGAAAGGACATTTATATAAAGCATATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTATGCAGTATCAGGGGAAAGGACATTTATATAAAGCATATAGA  300

seq1  TTAAAGTGGATATAAATTGTATTATAGACAAATCTTGTATTTCCTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGGATATAAATTGTATTATAGACAAATCTTGTATTTCCTTCTCT  350

seq1  AGGTAGCGATGAAAGAACTCAAACATTCAATCTACCGCGGCTGTGCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCGATGAAAGAACTCAAACATTCAATCTACCGCGGCTGTGCATAC  400

seq1  AGAAGTTCTTCCCAGTAAAGAAATGCTTTGTTTTTGACGCTCCTGCGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTCTTCCCAGTAAAGAAATGCTTTGTTTTTGACGCTCCTGCGCTT  450

seq1  GGAAGTAAGCTTTCCCAGCTTCCAACACTCAGCAACGAGGAGCTGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAAGCTTTCCCAGCTTCCAACACTCAGCAACGAGGAGCTGAACTC  500

seq1  AGATTTTGTGCAGGACCTTTCAGAATTCTGTTCACACATCTTCACCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTGCAGGACCTTTCAGAATTCTGTTCACACATCTTCACCCAAT  550

seq1  CTAAGACCAAGACTCTTCCAGGAGGCATCCAGGTCAACGGACCTCGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACCAAGACTCTTCCAGGAGGCATCCAGGTCAACGGACCTCGTGAG  600

seq1  TACTTTTTAAAAAATTTTATTCCAACTCATCATAGAGAGTAATGGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTAAAAAATTTTATTCCAACTCATCATAGAGAGTAATGGACACA  650

seq1  CAGAGAATCTTTGTTGATGAATTGACAAATGGGTTAGTATTAGCTATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATCTTTGTTGATGAATTGACAAATGGGTTAGTATTAGCTATGAT  700

seq1  GGATATTCAGTGTACTGTGTTCAGAAATCAATACACTTCTAGTATTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTCAGTGTACTGTGTTCAGAAATCAATACACTTCTAGTATTTGTT  750

seq1  TAGTAAAACCTCAGAGGTACATCAAGTTTAATAAGAACAAAGATGTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAACCTCAGAGGTACATCAAGTTTAATAAGAACAAAGATGTGAAG  800

seq1  TTTAGAGAAGCTTTTACTCTTGAAACACATTAACTCACATGGGTTGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAAGCTTTTACTCTTGAAACACATTAACTCACATGGGTTGACCA  850

seq1  CATCTACACAAGGGGATTTTTATTATGTGACACAGTATTTGATGATTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACACAAGGGGATTTTTATTATGTGACACAGTATTTGATGATTGCA  900

seq1  TCTTAATGCAGAACCCCATGATTTAGAACGTGGCAAATGCTTACTCTAAC  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTTAATGCAGAACCCCATGATTTAGAACGTGGC-AATGCTTACTCTAAC  949

seq1  ATGAATGGAATCTGCGTTACCTTCATTAAGAAGCTGGCAAGGAAGAAAAA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  ATGAATGGAATCTGCGTTACCTTCATT-AGAAGCTGGCAAGGAAG-AAAA  997

seq1  CGAGGCAGTTCTGGTGAAGAATAAGATCTAGGTCACTGAATCCTATTTAC  1050
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGAGGCAGTTCTGGTGAAGAAT-AGATCTAGGTCACTGAATCCTATTTAC  1046

seq1  AGAGGAAATTAA-CTCATGCCACCTTGATTGTGAT-AAAACAAAACAAAA  1098
      |||||||||||| |||||||||||||   |||||| |||||||||| |||
seq2  AGAGGAAATTAACCTCATGCCACCTTTGATGTGATAAAAACAAAAC-AAA  1095

seq1  AGGGGAAACGGTGAATGAAATAGAAAACTG  1128
      |||| || ||||||||||||||||||||||
seq2  AGGGAAACCGGTGAATGAAATAGAAAACTG  1125

seq1: chr3_142325015_142326188
seq2: B6Ng01-203E13.g_65_1236 (reverse)

seq1  ATATTT-ACTATGCACAGTGTTGGCG-ATG-CAGAG-AGCCATGAAGGAG  46
      |||||| ||||||||||| ||| ||| ||| ||||| |||||||||||||
seq2  ATATTTAACTATGCACAG-GTTTGCGAATGCCAGAGAAGCCATGAAGGAG  49

seq1  GTATGGAGCCTGTTCTCGTAGTGCC-TATGTTAAAATGAATGCAAACATT  95
      |||||||| |||||||||||||||| |||||| |||||||||| ||||| 
seq2  GTATGGAGGCTGTTCTCGTAGTGCCTTATGTT-AAATGAATGC-AACAT-  96

seq1  CCGTAG-ACACGGGCCCATGAAATCTCCATCCAGCATTCTTAGCCTTTAG  144
       ||||| | ||||||||||| |||||||||| |||| || ||||| ||||
seq2  -CGTAGAAAACGGGCCCATG-AATCTCCATCAAGCAATC-TAGCCCTTAG  143

seq1  GGTTGCAGGCACCTCATGAGAGGATCTTG-CTAAGAGGAAAGTCTAATTC  193
      ||||||||||| |||||||||||||| || ||||||||||||||||| ||
seq2  GGTTGCAGGCA-CTCATGAGAGGATCCTGCCTAAGAGGAAAGTCTAA-TC  191

seq1  TATCAGTGTGAGACAGAGGCTGGGATGCTTCAGTTTGTCATTCTTTCAAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGTGAGACAGAGGCTGGGATGCTTCAGTTTGTCATTCTTTCAAA  241

seq1  CGATGCTAAGGACACTGATGCTCTACAACATCATATCTAGTGACTGGCAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCTAAGGACACTGATGCTCTACAACATCATATCTAGTGACTGGCAT  291

seq1  ATCTAGAATTTCACAGAATAGACTTGTCTTCATCCATCTGTTGCAAATAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAATTTCACAGAATAGACTTGTCTTCATCCATCTGTTGCAAATAT  341

seq1  TGTTACCTGTTTCCTGTTTATAGGACTAAAGAATTTGGTGACAACCTATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCTGTTTCCTGTTTATAGGACTAAAGAATTTGGTGACAACCTATG  391

seq1  TGAACACCATCAGCAATGGGTCTCTGCCCTGCATGGAGAGTGCTGTCCTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACCATCAGCAATGGGTCTCTGCCCTGCATGGAGAGTGCTGTCCTG  441

seq1  GCTCTGTCAGAAACAGAGAACTCAGCAGCAGTGCGAAAGGCCATTGCCCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCAGAAACAGAGAACTCAGCAGCAGTGCGAAAGGCCATTGCCCA  491

seq1  CTATGACCAGCAGATGAGCCAGAGTCTGAAGCTGCCCACAGAGACCCTCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACCAGCAGATGAGCCAGAGTCTGAAGCTGCCCACAGAGACCCTCC  541

seq1  AGGAGCTGCTGGACCTGCACAGGAGCAGTGAGAAAGAAGCCATCAAGATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGCTGGACCTGCACAGGAGCAGTGAGAAAGAAGCCATCAAGATT  591

seq1  TTCATGGAAAATTCCTTCAAAGATGTTGACCAAGTGTTCCTAACAAAATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGAAAATTCCTTCAAAGATGTTGACCAAGTGTTCCTAACAAAATT  641

seq1  AGAGGTAATTTTTTCCCTCAAGTTTCTGGAATGTAGATTTTTAAAAGCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAATTTTTTCCCTCAAGTTTCTGGAATGTAGATTTTTAAAAGCAA  691

seq1  GTCAAATGGGAGTTGTGATTAGGCAACTGCGACTAGATTTTGAAGTAGTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGGGAGTTGTGATTAGGCAACTGCGACTAGATTTTGAAGTAGTA  741

seq1  ACAGATAATTATTAATAATCACAATAAATAAAAATGAATTGCAATACACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATTATTAATAATCACAATAAATAAAAATGAATTGCAATACACT  791

seq1  CAAAACTTTGCAACATTACTCCTGTCATGAATAAGGTAGTGATATCCCCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTTGCAACATTACTCCTGTCATGAATAAGGTAGTGATATCCCCC  841

seq1  TTCAATGAATTAATGACAGAGAGCCAATTAGTGTATCTGATCATATTGCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGAATTAATGACAGAGAGCCAATTAGTGTATCTGATCATATTGCA  891

seq1  TGCCCAGTGTCAGCAAACTGATTCAATATTCAAGCCAATAACAAATTCAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTGTCAGCAAACTGATTCAATATTCAAGCCAATAACAAATTCAC  941

seq1  ATTGAGCCATGTTTAGTCCTTGTGTCATCTTTAACCCAGTCTGAAAAAGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCCATGTTTAGTCCTTGTGTCATCTTTAACCCAGTCTGAAAAAGT  991

seq1  AGTTTAACATCTAAAGGTGAAAATCTCTGCTCTGAACTTCACTGTCAAGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACATCTAAAGGTGAAAATCTCTGCTCTGAACTTCACTGTCAAGG  1041

seq1  AGCAAGGATGACGTCAGTAAAAGCTGGCAAGAGAGGAAGAGATCTAGTTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGATGACGTCAGTAAAAGCTGGCAAGAGAGGAAGAGATCTAGTTA  1091

seq1  CAGTCAGCACTCATATATTTTTCTTTGTTTTGCATTTGTGTTTGTTTTGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCACTCATATATTTTTCTTTGTTTTGCATTTGTGTTTGTTTTGT  1141

seq1  GTTTTGTGTTTGTTTTACTTTTAAGGAATTC  1174
      |||||||||||||||||||||||||||||||
seq2  GTTTTGTGTTTGTTTTACTTTTAAGGAATTC  1172