BAC Information

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BAC

Clone NameB6Ng01-203L01
Chromosome3 (Build37)
Map Location 92,638,326 - 92,769,370
singlet/doubletdoublet
Overlap geneLce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp
Downstream gene2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203L01.bB6Ng01-203L01.g
ACCGA023836GA023837
length1,1461,112
definitionB6Ng01-203L01.b B6Ng01-203L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,768,213 - 92,769,370)(92,638,326 - 92,639,278)
sequence
gaattctgggttgcatataaggcaagcatctgctttctagtctaagatcc
tggtgagcgagcaccttctatcatctttcaccagtttagtgtagcctgag
ttcctgtagtagaatgaatatttgctttctcttaaactcatgtggaaact
ctaacccctaattttatagtattagaagagtaaactccaggagaacatgt
gaattttaagaatgttgtgataaatacatcttagctgttttgatgccatc
tgttatagcagcctgaaggaaccaagaaagccctcaactttccgaaggtg
actgtctttaggaacaccccctcccccttttcttgaaggctttctagatg
agagtttctctcatggaagccattcatctctctgtatttaagttaaacac
atttgatggagcatgcctcatgaggcaggcagcatggactgcactgtgaa
tgcacctgggaaccaaggggagtttatgtaggacagacagcaagagaata
agcattttgttgtctagagctgggactcacagttctctcaattgtgctgt
aaaaatcctggagcttcagatgattggcagaagtcagacactgatttcac
ctactttataatcctttagaagcaagaacaggcactgtttttgaccaggt
ggatagaatcttaagttactgggaaccaaacttgaaaggtcacctctgtc
atttttttgcaagcttcccaacaaaatattcagaaactataggcaaagaa
tctgcacatgaaatgcaagccatcttctgttgttctttcagatgctccat
ccctacctgcctatggagtcttatatcctagagaagaaactgtccgtccc
tggaaaggcaaaggatatgaggactgcattgcagggtttccagatgggaa
aagtgtcatctcaggagaatgggcatcctgttacccatacaaggcagcag
ctggtctagaagatggcttagaggagttctggacttaactgatgcccaca
tgtgctatgatagaagcctgtagccattcagtttacttccttggtgattc
tgttcagatcatatactcctaagttggggggtgattctcccccaactgag
cagaactattgccattcaggactctctgtacatagtggcactgatt
gaattctttgtatatattgcatattagccttctatcagatgtagggttgg
taaagatcttttcccactctgttagttgtcattttgtactattgacactg
tcctttgccttatagaagctttgcaattttatgaggtcccatttgtcaat
tcttgatcttaggacataagccattggtgttctgttcaggaaattttccc
ctgtgcccatgtcctcgaggctcttcccctttttcttttcttttagtttc
agtgtatctggttttatgtggaggtccttgatccacttagacttgagctt
tgtacaaggagatatgaatggatcaatttgcatttttctatatgcttact
tatagttgagccagcaccatttgttgaaaatgctgtcttttttttccact
ggagggttttagctcctttgtcaaagatcaagaaccatatgcgcgtgggt
ccatttcttcaattctattccattgatctacctgcctgtttctgtaccag
taccatgcagttttatcactactgctctgtaatacagcttgaggtcaggg
atggtgattcccccagaaatgtttttattgttgatagtattttttgctgt
cctgggttttttgttattccagatgaatttgcaaattgctctttctaaca
gtgaagacttgagttggaaattttttaacagaagaaaatgttagcaagca
ttgaatccatttagtggagcctgtatgtgcatggaaatgggaccatctcc
tgaagaaaggaaaagcccttacgacctgcatccttaaagaaagctgactt
tccctatctcaggcagccctcaactgcttagatgaggattagactcccta
tctcagcagctctcaactgcttagatgaggatgagactccataacccttt
ccaaatctatgctgaatttgctagctctctgcatactgtctgggttcatg
tatgaagctaactatgctgtcatgtctggcaaatactggttttgctgagt
cactattttctctggctcttacatctttctgtcttctcatatggtcactg
gggctgctagaggaatcaggttatatgtttcattagacctggatacctgg
ccatctttattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92768213_92769370
seq2: B6Ng01-203L01.b_44_1189 (reverse)

seq1  AATCAGTGCCATTATGGTAACAAGAGAGTCTTGAATTGGCAATTAGTTCT  50
      ||||||||||| ||| |||   |||||||| |||| |||||| |||||||
seq2  AATCAGTGCCACTAT-GTA--CAGAGAGTCCTGAA-TGGCAA-TAGTTCT  45

seq1  GCTCAGTTGGGGGGAAGGAATCA-CCCCCAACTTAGAAGTATTATGATCT  99
      |||||||||||||    |||||| |||||||||||| |||| ||||||||
seq2  GCTCAGTTGGGGG---AGAATCACCCCCCAACTTAGGAGTA-TATGATCT  91

seq1  GAACAGAATCCACCAAGGAAGTAAACCTGAATGGCTACAGGCTTCTATCA  149
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  GAACAGAAT-CACCAAGGAAGTAAA-CTGAATGGCTACAGGCTTCTATCA  139

seq1  TAGCACATGTGGGCATCAGTTAAGTCCAGAACTCCTCCTAAGCCATCCTT  199
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TAGCACATGTGGGCATCAGTTAAGTCCAGAACTCCT-CTAAGCCAT-CTT  187

seq1  CTAGACCAGCTGCTGCCTTGTATGGGTAACAGGATGCCCATTCTCCCTGA  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAGACCAGCTGCTGCCTTGTATGGGTAACAGGATGCCCATTCT-CCTGA  236

seq1  GATGACACTTTTCCCATCTGG-AACCCTGCAATGCAGTCCTCATATCCTT  298
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATGACACTTTTCCCATCTGGAAACCCTGCAATGCAGTCCTCATATCCTT  286

seq1  TGCCTTTCCAGGGACGGACAGTTTCTTCTCTAGGATATAAGACTCCATAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCCAGGGACGGACAGTTTCTTCTCTAGGATATAAGACTCCATAG  336

seq1  GCAGGTAGGGATGGAGCATCTGAAAGAACAACAGAAGATGGCTTGCATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAGGGATGGAGCATCTGAAAGAACAACAGAAGATGGCTTGCATTT  386

seq1  CATGTGCAGATTCTTTGCCTATAGTTTCTGAATATTTTGTTGGGAAGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAGATTCTTTGCCTATAGTTTCTGAATATTTTGTTGGGAAGCTT  436

seq1  GCAAAAAAATGACAGAGGTGACCTTTCAAGTTTGGTTCCCAGTAACTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAAATGACAGAGGTGACCTTTCAAGTTTGGTTCCCAGTAACTTAA  486

seq1  GATTCTATCCACCTGGTCAAAAACAGTGCCTGTTCTTGCTTCTAAAGGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATCCACCTGGTCAAAAACAGTGCCTGTTCTTGCTTCTAAAGGAT  536

seq1  TATAAAGTAGGTGAAATCAGTGTCTGACTTCTGCCAATCATCTGAAGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTAGGTGAAATCAGTGTCTGACTTCTGCCAATCATCTGAAGCTC  586

seq1  CAGGATTTTTACAGCACAATTGAGAGAACTGTGAGTCCCAGCTCTAGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTTTACAGCACAATTGAGAGAACTGTGAGTCCCAGCTCTAGACA  636

seq1  ACAAAATGCTTATTCTCTTGCTGTCTGTCCTACATAAACTCCCCTTGGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGCTTATTCTCTTGCTGTCTGTCCTACATAAACTCCCCTTGGTT  686

seq1  CCCAGGTGCATTCACAGTGCAGTCCATGCTGCCTGCCTCATGAGGCATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGCATTCACAGTGCAGTCCATGCTGCCTGCCTCATGAGGCATGC  736

seq1  TCCATCAAATGTGTTTAACTTAAATACAGAGAGATGAATGGCTTCCATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAATGTGTTTAACTTAAATACAGAGAGATGAATGGCTTCCATGA  786

seq1  GAGAAACTCTCATCTAGAAAGCCTTCAAGAAAAGGGGGAGGGGGTGTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTCTCATCTAGAAAGCCTTCAAGAAAAGGGGGAGGGGGTGTTCC  836

seq1  TAAAGACAGTCACCTTCGGAAAGTTGAGGGCTTTCTTGGTTCCTTCAGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGTCACCTTCGGAAAGTTGAGGGCTTTCTTGGTTCCTTCAGGC  886

seq1  TGCTATAACAGATGGCATCAAAACAGCTAAGATGTATTTATCACAACATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAACAGATGGCATCAAAACAGCTAAGATGTATTTATCACAACATT  936

seq1  CTTAAAATTCACATGTTCTCCTGGAGTTTACTCTTCTAATACTATAAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTCACATGTTCTCCTGGAGTTTACTCTTCTAATACTATAAAAT  986

seq1  TAGGGGTTAGAGTTTCCACATGAGTTTAAGAGAAAGCAAATATTCATTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTTAGAGTTTCCACATGAGTTTAAGAGAAAGCAAATATTCATTCT  1036

seq1  ACTACAGGAACTCAGGCTACACTAAACTGGTGAAAGATGATAGAAGGTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGAACTCAGGCTACACTAAACTGGTGAAAGATGATAGAAGGTGC  1086

seq1  TCGCTCACCAGGATCTTAGACTAGAAAGCAGATGCTTGCCTTATATGCAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCACCAGGATCTTAGACTAGAAAGCAGATGCTTGCCTTATATGCAA  1136

seq1  CCCAGAATTC  1158
      ||||||||||
seq2  CCCAGAATTC  1146

seq1: chr3_92638326_92639278
seq2: B6Ng01-203L01.g_238_1173

seq1  GTGTTCTGTTCAGGAAATTTTCCCCTGTGCCCATGTCCTCGAGGCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGTTCAGGAAATTTTCCCCTGTGCCCATGTCCTCGAGGCTCTTC  50

seq1  CCCTTTTTCTTTTCTTTTAGTTTCAGTGTATCTGGTTTTATGTGGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTCTTTTCTTTTAGTTTCAGTGTATCTGGTTTTATGTGGAGGTC  100

seq1  CTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATATGAATGGATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATATGAATGGATCAA  150

seq1  TTTGCATTTTTCTATATGCTTACTTATAGTTGAGCCAGCACCATTTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTTTCTATATGCTTACTTATAGTTGAGCCAGCACCATTTGTTG  200

seq1  AAAATGCTGTCTTTTTTTTCCACTGGAGGGTTTTAGCTCCTTTGTCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGTCTTTTTTTTCCACTGGAGGGTTTTAGCTCCTTTGTCAAAG  250

seq1  ATCAAGAACCATATGCGCGTGGGTCCATTTCTTCAATTCTATTCCATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAACCATATGCGCGTGGGTCCATTTCTTCAATTCTATTCCATTGA  300

seq1  TCTACCTGCCTGTTTCTGTACCAGTACCATGCAGTTTTATCACTACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGCCTGTTTCTGTACCAGTACCATGCAGTTTTATCACTACTGCT  350

seq1  CTGTAATACAGCTTGAGGTCAGGGATGGTGATTCCCCCAGAAATGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATACAGCTTGAGGTCAGGGATGGTGATTCCCCCAGAAATGTTTTT  400

seq1  ATTGTTGATAGTATTTTTTGCTGTCCTGGGTTTTTTGTTATTCCAGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGATAGTATTTTTTGCTGTCCTGGGTTTTTTGTTATTCCAGATGA  450

seq1  ATTTGCAAATTGCTCTTTCTAACAGTGAAGACTTGAGTTGGAAATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAATTGCTCTTTCTAACAGTGAAGACTTGAGTTGGAAATTTTTT  500

seq1  AACAGAAGAAAATGTTAGCAAGCATTGAATCCATTTAGTGGAGCCTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGAAAATGTTAGCAAGCATTGAATCCATTTAGTGGAGCCTGTAT  550

seq1  GTGCATGGAAATGGGACCATCTCCTGAAGAAAGGAAAAGCCCTTACGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGAAATGGGACCATCTCCTGAAGAAAGGAAAAGCCCTTACGACC  600

seq1  TGCATCCTTAAAGAAAGCTGACTTTCCCTATCTCA-GCAGCCCTCAACTG  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCATCCTTAAAGAAAGCTGACTTTCCCTATCTCAGGCAGCCCTCAACTG  650

seq1  CTTAGATGAGGATTAGACTCCCTATCTCAGCAGCTCTCAACTGCTTAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATGAGGATTAGACTCCCTATCTCAGCAGCTCTCAACTGCTTAGAT  700

seq1  GAGGATGAGACTCCATAACCCTTTCCAAATCTATGCTGAATTTTTGCTAG  749
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GAGGATGAGACTCCATAACCCTTTCCAAATCTATGCTGAA--TTTGCTAG  748

seq1  CTCTCTTGCATACTGTTCTGGGTTCATGTATGAAGCTAACTATGCTGTCA  799
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTC-TGCATACTG-TCTGGGTTCATGTATGAAGCTAACTATGCTGTCA  796

seq1  TGTCTGGCAAATACTGGTTTTGCTGAAGTCAACTATTTTCTCTGGCTCTT  849
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  TGTCTGGCAAATACTGGTTTTGCTG-AGTC-ACTATTTTCTCTGGCTCTT  844

seq1  ACAATCTTTCTGTCCTTTCTTTCCATATGGTCACTGGGCCTTGCTAGGAA  899
      || |||||||||||  ||||   ||||||||||||||| | ||||||  |
seq2  AC-ATCTTTCTGTC--TTCT---CATATGGTCACTGGGGC-TGCTAG--A  885

seq1  GGGATACAGTAAATATGTTTCATTTAGAACTGAGTACTTGGCCATCTTTT  949
      || || |||   |||||||||| ||||| |||  ||| |||||||| |||
seq2  GGAAT-CAGGTTATATGTTTCA-TTAGACCTGGATACCTGGCCATC-TTT  932

seq1  ATTC  953
      ||||
seq2  ATTC  936