MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-204D06
Chromosome	3 (Build37)
Map Location	31,885,438 - 31,996,558
singlet/doublet	doublet
Overlap gene	Kcnmb2
Upstream gene	Prkci, Skil, Cldn11, Slc7a14, LOC625125
Downstream gene	LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Prkci (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18759 MGI:99260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Skil (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20482 MGI:106203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cldn11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18417 MGI:106925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc7a14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241919 MGI:3040688
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC625125 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein pseudo : _no_value

name	Kcnmb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72413 MGI:1919663
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665514 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665514
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Zmat3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22401 MGI:1195270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930429B21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67576 MGI:1914826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs

name	Pik3ca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18706 MGI:1206581
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnmb3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435726 MGI:3612244
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins

name	Zfp639 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67778 MGI:1915028
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mfn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67414 MGI:1914664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gnb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14696 MGI:104581
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040977 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Actl6a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56456 MGI:1861453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrpl47 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74600 MGI:1921850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufb5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66046 MGI:1913296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72607 MGI:1919857
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pex2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58869 MGI:1916672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkci (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778988 GeneID:18759 MGI:99260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, iota transcript_id : NM_008857.3

name	Skil (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84875516 GeneID:20482 MGI:106203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SKI-like transcript_id : NM_011386.2

name	Skil (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84875519 GeneID:20482 MGI:106203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SKI-like transcript_id : NM_001039090.1

name	Cldn11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130649 GeneID:18417 MGI:106925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : claudin 11 transcript_id : NM_008770.2

name	Slc7a14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254250 GeneID:241919 MGI:3040688
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 transcript_id : NM_172861.2

name	Kcnmb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560079 GeneID:72413 MGI:1919663
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium large conductance calcium-activated channel, subfamily M, beta member 2 transcript_id : NM_028231.2

name	Zmat3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:101943565 GeneID:22401 MGI:1195270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger matrin type 3 transcript_id : NM_009517.2

name	Pik3ca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679316 GeneID:18706 MGI:1206581
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol 3-kinase, catalytic, alpha polypeptide transcript_id : NM_008839.1

name	Kcnmb3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250873 GeneID:435726 MGI:3612244
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : potassium large conductance calcium-activated channel, subfamily M, beta member 3 transcript_id : XM_001475546.1

name	Zfp639 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803090 GeneID:67778 MGI:1915028
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 639 transcript_id : NM_144519.3

name	Mfn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351556 GeneID:67414 MGI:1914664
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitofusin 1 transcript_id : NM_024200.3

name	Gnb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542898 GeneID:14696 MGI:104581
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, beta 4 transcript_id : NM_013531.2

name	LOC100040977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250875 GeneID:100040977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040977 transcript_id : XM_001475592.1

name	Actl6a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9789892 GeneID:56456 MGI:1861453
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin-like 6A transcript_id : NM_019673.1

name	Mrpl47 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:29826331 GeneID:74600 MGI:1921850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L47 transcript_id : NM_029017.1

name	Ndufb5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754143 GeneID:66046 MGI:1913296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 transcript_id : NM_025316.2

name	Usp13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131141 GeneID:72607 MGI:1919857
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 13 (isopeptidase T-3) transcript_id : NM_001013024.2

name	Pex2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372154 GeneID:58869 MGI:1916672
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxin 2 transcript_id : NM_021483.2

name	Prkci (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133778989 CCDS:CCDS17289.1 GeneID:18759 MGI:99260
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005829 - cytosol [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS]; GO:0000133 - polarisome [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence ISS] [Evidence IEA]; GO:0004700 - atypical protein kinase C activity [Evidence IEA] [Evidence ISS]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005543 - phospholipid binding [Evidence ISS]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007015 - actin filament organization [Evidence IMP]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence ISS]; GO:0045197 - establishment and/or maintenance of epithelial cell polarity [Evidence ISS]; GO:0035089 - establishment of apical/basal cell polarity [Evidence IMP]; GO:0042462 - eye photoreceptor cell development [Evidence IMP]; GO:0045216 - intercellular junction assembly and maintenance [Evidence ISS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0016044 - membrane organization and biogenesis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0006612 - protein targeting to membrane [Evidence ISS]; GO:0046903 - secretion [Evidence ISS]; GO:0016192 - vesicle-mediated transport [Evidence ISS] codon_start : 1 note : protein kinase C, lambda product : protein kinase C, iota protein_id : NP_032883.2

name	Skil (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84875517 GeneID:20482 MGI:106203
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; ski/sno related product : SKI-like isoform a protein_id : NP_035516.2

name	Skil (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84875520 GeneID:20482 MGI:106203
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; ski/sno related product : SKI-like isoform b protein_id : NP_001034179.1

name	Cldn11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679186 CCDS:CCDS17290.1 GeneID:18417 MGI:106925
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence TAS] [Evidence ISS] GO_function : GO:0042802 - identical protein binding [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008366 - axon ensheathment [Evidence IMP]; GO:0016338 - calcium-independent cell-cell adhesion [Evidence ISS]; GO:0007155 - cell adhesion [Evidence IMP]; GO:0007283 - spermatogenesis [Evidence IMP] codon_start : 1 note : oligodendrocyte transmembrane protein; oligodendrocyte-specific protein product : claudin 11 protein_id : NP_032796.1

name	Slc7a14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370304 CCDS:CCDS17291.1 GeneID:241919 MGI:3040688
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005279 - amino acid-polyamine transporter activity [Evidence IEA] GO_process : GO:0006865 - amino acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 7, member 14 protein_id : NP_766449.1

name	Kcnmb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312300 CCDS:CCDS17292.1 GeneID:72413 MGI:1919663
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015269 - calcium-activated potassium channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein_id : NP_082507.1

name	Zmat3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:101943566 CCDS:CCDS17293.1 GeneID:22401 MGI:1195270
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030308 - negative regulation of cell growth [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : wild-type p53-induced gene 1 protein_id : NP_033543.2

name	Pik3ca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679317 GeneID:18706 MGI:1206581
definition	GO_component : GO:0030027 - lamellipodium [Evidence IDA]; GO:0005942 - phosphoinositide 3-kinase complex [Evidence IPI] GO_function : GO:0004428 - inositol or phosphatidylinositol kinase activity [Evidence IEA]; GO:0043560 - insulin receptor substrate binding [Evidence IPI]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016303 - phosphatidylinositol 3-kinase activity [Evidence IDA]; GO:0046934 - phosphatidylinositol-4,5-bisphosphate 3-kinase activity [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IMP]; GO:0006006 - glucose metabolism [Evidence IMP]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0043491 - protein kinase B signaling cascade [Evidence IMP]; GO:0040014 - regulation of body size [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : phosphatidylinositol 3-kinase, catalytic, alpha polypeptide protein_id : NP_032865.1

name	Kcnmb3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250874 GeneID:435726 MGI:3612244
definition	codon_start : 1 product : similar to calcium-activated potassium channel beta 3 subunit protein_id : XP_001475596.1

name	Zfp639 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21362299 CCDS:CCDS17295.1 GeneID:67778 MGI:1915028
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger protein 639 protein_id : NP_653102.1

name	Mfn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789169 CCDS:CCDS17296.1 GeneID:67414 MGI:1914664
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005741 - mitochondrial outer membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007275 - development [Evidence IEA]; GO:0008053 - mitochondrial fusion [Evidence IMP] codon_start : 1 exception : mismatches in translation product : mitofusin 1 protein_id : NP_077162.1

name	Gnb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542899 CCDS:CCDS17297.1 GeneID:14696 MGI:104581
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence ISS] GO_function : GO:0003924 - GTPase activity [Evidence ISS]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0005083 - small GTPase regulator activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : guanine nucleotide-binding protein, beta-4 subunit protein_id : NP_038559.2

name	LOC100040977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250876 GeneID:100040977
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475642.1

name	Actl6a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9789893 CCDS:CCDS17298.1 GeneID:56456 MGI:1861453
definition	GO_component : GO:0005884 - actin filament [Evidence IEA]; GO:0016585 - chromatin remodeling complex [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003682 - chromatin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005200 - structural constituent of cytoskeleton [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006338 - chromatin remodeling [Evidence IDA]; GO:0001558 - regulation of cell growth [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : actin-like 6 product : BRG1/brm-associated factor 53A protein_id : NP_062647.1

name	Mrpl47 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29826332 CCDS:CCDS17299.1 GeneID:74600 MGI:1921850
definition	GO_component : GO:0005761 - mitochondrial ribosome [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 note : metanephros-derived tubulogenic factor product : mitochondrial ribosomal protein L47 protein_id : NP_083293.1

name	Ndufb5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754144 CCDS:CCDS17300.1 GeneID:66046 MGI:1913296
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0003954 - NADH dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] codon_start : 1 product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 protein_id : NP_079592.2

name	Usp13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61316410 CCDS:CCDS17301.1 GeneID:72607 MGI:1919857
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 13 (isopeptidase T-3) protein_id : NP_001013042.1

name	Pex2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946890 CCDS:CCDS17302.1 GeneID:58869 MGI:1916672
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : peroxisomal targeting signal 1 receptor-like product : peroxin 2 protein_id : NP_067458.1

name	LOC665514 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665514
definition	number : 1 pseudo : _no_value

name	LOC665514 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665514
definition	number : 2 pseudo : _no_value

name	LOC625125 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149250832 GeneID:625125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : hypothetical LOC625125 pseudo : _no_value transcript_id : XR_031683.1

name	4930429B21Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149250872 GeneID:67576 MGI:1914826
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs product : RIKEN cDNA 4930429B21 gene transcript_id : XR_035269.1

clone name	MSMg01-102K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172A09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-527P05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-103M21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-084P02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-159E21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-543H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423C04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-369K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185F06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345L19
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-204D06.b	B6Ng01-204D06.g
ACC	GA024214	GA024215
length	1,037	1,057
definition	B6Ng01-204D06.b	B6Ng01-204D06.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(31,885,438 - 31,886,454)	(31,995,521 - 31,996,558)
sequence	gaattctcttcaaaagtaaggaggtgatagatagatcctttgtcaatggg gagcctggagagatgtcaagcaagcatgaagacctgagtttggataccca gaacccacaaaagtataggtactgtagcatgtgtgtgacacccccacact gaggaagcagttataggaggagtccaggagcccactggttaaggagtcca ttttaatcagtgaggtccaggttcaataggctatactgtgtcaaacaaga agatgaagaacaactgaagaagacacttgctacctatctcttacctccac acatgcatgcatatgggcatacacatccaccacacatccatacaacctac acacacacacacacacaatcaaacacacacatacacagcacaaacaataa gtactctaaggcagtgggtcaagttcaatagcagtgaaattacccaatct atcctcagtacagaagttgatattgagagtggatgggttgggaagcagag tggacactgaggtcatgttgaatctatgagcgagatctaaaacaacatga tcctgctcttgggaatgagactgtcagaactctagatcccaggcatcttt gtgctttgttatgaaacacttagcatcttctatgtgaaatattctgacac ataatgaaaaaatcattaagacattgaagaattgcctagtgatcacttac atcaagagacaaatggaagactacagtggaagagtgagtttgggctcatg gaaacaactgatctgtaatttttcaaactaaaaggcttttgggtcaagac agagtgaggttaaaacgcccttcacctctatcctccatggcttataaatc ttaatgcttccaccccacagagctagttctgcattaccacacattcttca tagcccagagaattgtgggcaatgattgcttccaacccaagaaaagacaa cataatgttttattgtactgcccagtgtttgccctggtgttttcaaccgg ctttttccttgatactgtataaaggaccttgaaaaaa	gaattcctttagctctgcaatgagggaaaagaatctggagtttttcccca gaggaaaattctttggaacacttaaacaacacaataaattcttatctctg aggctgtgtgaccatgaagttgcttctgcagtgctttttgtttttgccac agagttctttgcttcaatgtgtcacctggggtaagtaggtgttataattc tagatttaccagtgacagtcccgccaagaggttcagagacagcacctatg atggttaatcttaattgttagtttggctggatttaaagtcaccgtcgaaa cacatttccaggcaggtctgtgagggcttacttagattaggttaattgag aaggtaagacccatcctaaatgtgggtaccgttttgcagactaggatatt ggactgaatgaaaaggagatatcgcggtgagtataagcacccatctttct ctgctgtctgactgtggatacaacgtgaccagctcctaccaccatagctt tctgccatgatggatggcatccttgaactgtgagttgaaataaaacattt ccttctctaacttgcttttcccaggacttttggtgcagcaatgagaaaag taagtactaaagtccctgaagtcacattgagtcacacggcctgtggcctg agaggtgacactgacctgctcactctgatgtccctgctcatgttcctttc tgtctctccccaccacacactgtttccttgttatctaactaaagacattg tttttaaatctaaagccctccctcccctcattcatctacaatgggcaatt gggaaatttatacatctttaattaaaactactgtcttgccatggaatttc actttcctacacattgggaaagaatgaaaagtcagtaatattagttgcaa gggacgtgtggaccaatttgatccctgaattcatggcactttacatggag aagaggaagaacagactctatccaggtaatttcagggtattgtgtattta cttagctgtgcctgggtttcaagacagaaggaagtcttctgtgtctaagg cattcat
quality values	Open. Hide. 47 26 14 16 58 46 54 58 58 58 28 42 45 58 62 39 62 54 54 62 49 62 62 47 47 62 39 30 62 62 47 42 51 14 17 24 21 21 50 50 32 38 21 22 27 34 51 62 62 62 62 62 62 62 62 62 62 62 59 46 49 62 59 59 59 62 62 59 62 62 62 62 62 62 62 59 62 59 59 50 28 54 59 56 56 62 54 59 62 62 62 62 62 59 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 54 54 54 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 56 62 56 62 56 56 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 56 56 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 56 62 62 54 52 52 62 62 62 62 49 62 62 62 62 34 34 18 19 41 37 26 40 46 52 52 47 47 38 43 43 27 58 47 47 52 46 36 40 51 54 48 58 36 41 58 52 54 52 52 58 52 52 52 54 54 52 54 52 52 58 54 54 52 58 58 58 48 42 41 54 52 37 54 54 54 52 52 41 58 52 58 58 44 54 54 45 46 58 54 54 48 54 58 58 54 58 58 49 40 58 58 50 58 52 51 58 45 54 49 46 58 58 48 49 51 54 50 40 58 51 46 58 47 40 35 54 50 50 58 58 53 58 58 53 51 49 41 51 58 58 51 52 54 35 50 42 58 54 58 29 30 38 53 54 51 21 52 53 39 54 50 50 52 53 40 51 58 54 51 50 58 58 50 31 18 58 54 52 51 46 30 21 49 19 50 50 52 50 58 30 43 43 58 58 25 32 25 10 13 23 37 37 21 50 32 31 51 35 33 32 51 35 54 53 39 54 46 32 54 44 44 37 35 46 29 33 49 24 32 49 37 31 53 29 54 35 13 9 15 14 27 49 41 47 54 46 37 33 35 35 40 32 44 21 40 35 53 22 33 15 49 39 29 33 32 49 18 39 47 44 30 37 54 33 49 54 52 32 52 31 26 32 53 33 33 49 32 45 14 41 32 32 53 32 31 32 32 32 31 21 21 25 34 40 47 19 24 24 53 42 32 32 35 51 51 25 9 27 20 41 41 51 34 51 40 31 28 37 20 22 25 31 21 31 31 51 15 17 31 36 31 33 26 33 25 51 51 31 32 13 12 32 15 34 13 21 16 33 35 27 31 31 31 31 46 30 30 43 27 6 12 38 28 15 21 6 16 8 14 37 28 26 23 20 33 18 19 23 31 30 20 25 27 32 23 16 46 46 11 14 26 13 23 23 16 19 32 28 19 9 21 31 23 20 11 16 46 14 23 35 35 14 21 14 25 9 8 11 24 13 15 31 19 16 22 8 31 38 9 6 22 29 9 18 21 12 17 13 9 17 44 24 11 6 24 22 29 32 32 38 22 16 12 11 34 32 15 14 11 33 14 15 24 11 16 43 43 10 17 32 8 16 10 10 7 21 25 33 25 12 5 33 36 10 32 14 10 15 5 6 17 8 12 8 24 19 13 7 5 13 6 36 14 16 6 33 3 3 3 3 3 4 3 30 32 13 10 13 16 11 29 6 10 14 14 30 27 29 19 6 22 10 5 10 27 16 10 6 5 3 3 3 9 16 28 27 8 5 11 8 7 6 7 4 5 3 17 34 34 13	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr3_31885438_31886454
seq2: B6Ng01-204D06.b_50_1086

seq1  GAATTCTCTTCAAAAGTAAGGAGGTGATAGATAGATCCTTTGTCAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAAAAGTAAGGAGGTGATAGATAGATCCTTTGTCAATGGG  50

seq1  GAGCCTGGAGAGATGTCAAGCAAGCATGAAGACCTGAGTTTGGATACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGAGAGATGTCAAGCAAGCATGAAGACCTGAGTTTGGATACCCA  100

seq1  GAACCCACAAAAGTATAGGTACTGTAGCATGTGTGTGACACCCCCACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACAAAAGTATAGGTACTGTAGCATGTGTGTGACACCCCCACACT  150

seq1  GAGGAAGCAGTTATAGGAGGAGTCCAGGAGCCCACTGGTTAAGGAGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCAGTTATAGGAGGAGTCCAGGAGCCCACTGGTTAAGGAGTCCA  200

seq1  TTTTAATCAGTGAGGTCCAGGTTCAATAGGCTATACTGTGTCAAACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCAGTGAGGTCCAGGTTCAATAGGCTATACTGTGTCAAACAAGA  250

seq1  AGATGAAGAACAACTGAAGAAGACACTTGCTACCTATCTCTTACCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGAACAACTGAAGAAGACACTTGCTACCTATCTCTTACCTCCAC  300

seq1  ACATGCATGCATATGGGCATACACATCCACCACACATCCATACAACCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGCATATGGGCATACACATCCACCACACATCCATACAACCTAC  350

seq1  ACACACACACACACACAATCAAACACACACATACACAGCACAAACAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAATCAAACACACACATACACAGCACAAACAATAA  400

seq1  GTACTCTAAGGCAGTGGGTCAAGTTCAATAGCAGTGAAATTACCCAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTAAGGCAGTGGGTCAAGTTCAATAGCAGTGAAATTACCCAATCT  450

seq1  ATCCTCAGTACAGAAGTTGATATTGAGAGTGGATGGGTTGGGAAGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGTACAGAAGTTGATATTGAGAGTGGATGGGTTGGGAAGCAGAG  500

seq1  TGGACACTGAGGTCATGTTGAATCTATGAGCGAGATCTAAAACAACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTGAGGTCATGTTGAATCTATGAGCGAGATCTAAAACAACATGA  550

seq1  TCCTGCTCTTGGGAATGAGACTGTCAGAACTCTAGATCCCAGGCATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTTGGGAATGAGACTGTCAGAACTCTAGATCCCAGGCATCTTT  600

seq1  GTGCTTTGTTATGAAACACTTAGCATCTTCTATGTGAAATATTCTGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGTTATGAAACACTTAGCATCTTCTATGTGAAATATTCTGACAC  650

seq1  ATAATGAAAAAATCATTAAGACATTGAAGAATTGCCTAGTGATCACTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAAAAATCATTAAGACATTGAAGAATTGCCTAGTGATCACTTAC  700

seq1  ATCAAGAGACAAATGGAAGACTACAGTGGAAGAGTGAGTTTGGGCTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGACAAATGGAAGACTACAGTGGAAGAGTGAGTTTGGGCTCATG  750

seq1  GAAACAACTGATCTGTAA-TTTTCAAACTAAAAGGCTTTTGGGTCAAGAC  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAACAACTGATCTGTAATTTTTCAAACTAAAAGGCTTTTGGGTCAAGAC  800

seq1  AGAGTGAGGTTAAAACG-CCTTCACCTCTATCCTCCATGGC-TATAAATC  847
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  AGAGTGAGGTTAAAACGCCCTTCACCTCTATCCTCCATGGCTTATAAATC  850

seq1  TT-ATGCTTCCA-CCCACAGAGCTAGTTCTGCATTACCACACAT--CTCA  893
      || ||||||||| |||||||||||||||||||||||||||||||   |||
seq2  TTAATGCTTCCACCCCACAGAGCTAGTTCTGCATTACCACACATTCTTCA  900

seq1  TAG-CCAGAGAA-TGTGGGCAATGATTGC-TCCAA-CCAAG-AAAGACAA  938
      ||| |||||||| |||||||||||||||| ||||| ||||| ||||||||
seq2  TAGCCCAGAGAATTGTGGGCAATGATTGCTTCCAACCCAAGAAAAGACAA  950

seq1  CATAATG-TTTAATGTACTG-CCAGTG-TTGCCCT-GTG-TTTCAACC-G  982
      ||||||| |||| ||||||| |||||| ||||||| ||| |||||||| |
seq2  CATAATGTTTTATTGTACTGCCCAGTGTTTGCCCTGGTGTTTTCAACCGG  1000

seq1  CTTTT--CCTGATACTGTAATAAAAGACC-TGAAAAAA  1017
      |||||  | ||||||||| ||||| |||| ||||||||
seq2  CTTTTTCCTTGATACTGT-ATAAAGGACCTTGAAAAAA  1037

seq1: chr3_31995521_31996558
seq2: B6Ng01-204D06.g_68_1124 (reverse)

seq1  ATGAATGCCTAAG-CACAG-AGACTTCC-TCTGTCCTG-AACCCAGCAAC  46
      |||||||||| || ||||| |||||||| |||||| || |||||||  ||
seq2  ATGAATGCCTTAGACACAGAAGACTTCCTTCTGTCTTGAAACCCAGGCAC  50

seq1  AGCT-AGTAA--TCACATTACCCTG-AATTACTTGATTAGAGTCTGTTCT  92
      |||| |||||   |||| ||||||| |||||| ||  |||||||||||||
seq2  AGCTAAGTAAATACACAATACCCTGAAATTACCTGGATAGAGTCTGTTCT  100

seq1  TCCTCTTCTCCATGT-AAGTGCCATGAATTCAGGGATCAAATTGGTCCAC  141
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTCCATGTAAAGTGCCATGAATTCAGGGATCAAATTGGTCCAC  150

seq1  AACGT-CCTTGCAACTAATATTTACTGAC-TTTCATTCTTTCCCAATGTG  189
       |||| |||||||||||||| |||||||| ||||||||||||||||||||
seq2  -ACGTCCCTTGCAACTAATA-TTACTGACTTTTCATTCTTTCCCAATGTG  198

seq1  TAGG-AAGTGAAATTCCATGGCAAGACAGTAGTTTTAATT-AAGATGTAT  237
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGGAAAGTGAAATTCCATGGCAAGACAGTAGTTTTAATTAAAGATGTAT  248

seq1  AA--TTTCCAATTGCCCATTGTAGATG-ATGAGGGGAGGGAGGGC-TTAG  283
      ||  || |||||||||||||||||||| ||||||||||||||||| ||||
seq2  AAATTTCCCAATTGCCCATTGTAGATGAATGAGGGGAGGGAGGGCTTTAG  298

seq1  ATT--AAAACAATGTCTTTAGTTAGATAACAAGGAAACAGTGTGTGGTGG  331
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAACAATGTCTTTAGTTAGATAACAAGGAAACAGTGTGTGGTGG  348

seq1  GGAGAGACAG-AAGGAACATGAGCAGGGACATCAGAGTGAGCAGGTCAGT  380
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACAGAAAGGAACATGAGCAGGGACATCAGAGTGAGCAGGTCAGT  398

seq1  GTCACCTCTCAGGCCACAGGCCGTGTGACTCAATGTGACTTCAGGGACTT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCTCAGGCCACAGGCCGTGTGACTCAATGTGACTTCAGGGACTT  448

seq1  TAGTACTTACTTTTCTCATTGCTGCACCAAAAGTCCTGGGAAAAGCAAGT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTACTTTTCTCATTGCTGCACCAAAAGTCCTGGGAAAAGCAAGT  498

seq1  TAGAGAAGGAAATGTTTTATTTCAACTCACAGTTCAAGGATGCCATCCAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGGAAATGTTTTATTTCAACTCACAGTTCAAGGATGCCATCCAT  548

seq1  CATGGCAGAAAGCTATGGTGGTAGGAGCTGGTCACGTTGTATCCACAGTC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGAAAGCTATGGTGGTAGGAGCTGGTCACGTTGTATCCACAGTC  598

seq1  AGACAGCAGAGAAAGATGGGTGCTTATACTCACCGCGATATCTCCTTTTC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAGAGAAAGATGGGTGCTTATACTCACCGCGATATCTCCTTTTC  648

seq1  ATTCAGTCCAATATCCTAGTCTGCAAAACGGTACCCACATTTAGGATGGG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCCAATATCCTAGTCTGCAAAACGGTACCCACATTTAGGATGGG  698

seq1  TCTTACCTTCTCAATTAACCTAATCTAAGTAAGCCCTCACAGACCTGCCT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTTCTCAATTAACCTAATCTAAGTAAGCCCTCACAGACCTGCCT  748

seq1  GGAAATGTGTTTCGACGGTGACTTTAAATCCAGCCAAACTAACAATTAAG  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTGTTTCGACGGTGACTTTAAATCCAGCCAAACTAACAATTAAG  798

seq1  ATTAACCATCATAGGTGCTGTCTCTGAACCTCTTGGCGGGACTGTCACTG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCATCATAGGTGCTGTCTCTGAACCTCTTGGCGGGACTGTCACTG  848

seq1  GTAAATCTAGAATTATAACACCTACTTACCCCAGGTGACACATTGAAGCA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCTAGAATTATAACACCTACTTACCCCAGGTGACACATTGAAGCA  898

seq1  AAGAACTCTGTGGCAAAAACAAAAAGCACTGCAGAAGCAACTTCATGGTC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCTGTGGCAAAAACAAAAAGCACTGCAGAAGCAACTTCATGGTC  948

seq1  ACACAGCCTCAGAGATAAGAATTTATTGTGTTGTTTAAGTGTTCCAAAGA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCTCAGAGATAAGAATTTATTGTGTTGTTTAAGTGTTCCAAAGA  998

seq1  ATTTTCCTCTGGGGAAAAACTCCAGATTCTTTTCCC-CATTGCAGAGCTA  1029
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTTTCCTCTGGGGAAAAACTCCAGATTCTTTTCCCTCATTGCAGAGCTA  1048

seq1  AAGGAATTC  1038
      |||||||||
seq2  AAGGAATTC  1057

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information