BAC Information

Click to search

BAC

Clone NameB6Ng01-204P05
Chromosome3 (Build37)
Map Location 75,853,048 - 75,987,433
singlet/doubletdoublet
Overlap geneFstl5
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204P05.bB6Ng01-204P05.g
ACCGA024758GA024759
length1,1101,138
definitionB6Ng01-204P05.b B6Ng01-204P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,853,048 - 75,854,153)(75,986,294 - 75,987,433)
sequence
gaattctcccactcatgtctcccttctaccaactttacatagaacccact
gaatccaattattgcgctcgccatactcctggatatggaaccattcaata
gcacatggccaacccatcagggactacatccctataaaatggattcttct
attactggaagttatcaattcctcagctatgtatgagggcctaagttcct
ttaccaatttaaggttatatattcattggtactatcttctgcaggccttg
taccagtaaccaagatgctatgagtttagaagtgcaatagccctgtcctg
tccagaaaatacagctagcttcctgtatcttctccctgacttacaaattg
taagatcttcatatattccctacatcagggaatatgacctgactcagatg
gtgagagagtgaaaacaatggtgacacagaagaaataacaaacattcaag
tacaggtagactggagtcaggtgggttttgtgtgctccaatggaactgta
gcaactgccaaagactcagaactccagtttgttaattgtgtgcaactaaa
tggggaggaacctgactccactggtcatctcttaaagggacaagtctcag
actgcaaacatgagagaggaagaatgtgcagttcctagtttttgatatat
tgatctatccattgctcataaacactcatatctgcacacactatcaatat
tcacacttggaccagaggaaagctttgcaattcctctaatcctgacccaa
gagtaatatattgtcaatttcccaggggtctgaggcattcttccttgtca
tgtccattcctatgtcaaacaatacacaatcattaggaaattcatctact
ctttacagggttacttagaactttctgggcttccacaattattacccatg
gacataattacaacacaaatatttcagaggtaactcaatgtttggggatt
gggtttaatgcctgatctgttgaaggaatttcatttttctggttatttat
atgggccaataacccattactaggagctgtaatgaacttcttagagttaa
caatatgattatttctcgtgaacaatggtattaaaatccttataacagtg
atttatacaa

gaattctaatgaaagcaaaatcatttagacattcactagtttcagaaaag
aaatgggtggagaattaatacaggaaataacaatagaattctactgggta
ctgtattatctaaaaataatcaatagaggatttttataaggatttaatgt
tccatttttatcatttacaatgtgatcaattacctataggtgccaccatc
atgtcctagtctataattgctgaaaatatcagccagtattctttcagagt
catttttcaatttctaacttctttcactctaagattttcctaaggcacac
atgtaacctaagattcaggctagaatatatataatttagcttccatgact
atgttagctcaatgaatattattcagagatgcaccacattgctacttcag
tacatttcctgtgcatataagtggggatatatgcttgtggacatgaaaga
gagaagcagaaatatgataaagtcctatttgtgtacatattaaatggctt
tttaaagaaaaagaaagaaatgacaatgaaagtaatttttaaatgtttgg
gaacacagatttttattattatatttttctctgctaatataaattttata
ttaaagcccatacataaaatataaacatcaagaatagatttgtatttagt
tgattttatatttctatacataaatatactgatatgctaagaactgtctt
tcatttgtagaaatattacatcttcaaaacagaacaaggcaacaccaaaa
cattttagtttcccaagaggaaaatattcaaactgaagaaaggcagcaga
atttgaaaagaaaggcataattaggttacagaaaaaaacatctaagatat
ttctttataaaattttattaatagaatttagaatgatctaagtaaattcg
gtttggcccgtaatgctagactacacaatggagagcaggaaatccaccac
tgcttcttcggaatattaacacaaaagattgcatagataagtgtgtaatt
atactttagaaagtagagggatttgagaatagtcaaactgatagtagtaa
tagaaagggcatgtgttccatgcattatggggcaatgcatgcctggaatt
attacaaggatctacaaaaatgtaccagattgcactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75853048_75854153
seq2: B6Ng01-204P05.b_47_1156

seq1  GAATTCTCCCACTCATGTCTCCCTTCTACCAACTTTACATAGAACCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCACTCATGTCTCCCTTCTACCAACTTTACATAGAACCCACT  50

seq1  GAATCCAATTATTGCGCTCGCCATACTCCTGGATATGGAACCATTCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAATTATTGCGCTCGCCATACTCCTGGATATGGAACCATTCAATA  100

seq1  GCACATGGCCAACCCATCAGGGACTACATCCCTATAAAATGGATTCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGCCAACCCATCAGGGACTACATCCCTATAAAATGGATTCTTCT  150

seq1  ATTACTGGAAGTTATCAATTCCTCAGCTATGTATGAGGGCCTAAGTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGGAAGTTATCAATTCCTCAGCTATGTATGAGGGCCTAAGTTCCT  200

seq1  TTACCAATTTAAGGTTATATATTCATTGGTACTATCTTCTGCAGGCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATTTAAGGTTATATATTCATTGGTACTATCTTCTGCAGGCCTTG  250

seq1  TACCAGTAACCAAGATGCTATGAGTTTAGAAGTGCAATAGCCCTGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTAACCAAGATGCTATGAGTTTAGAAGTGCAATAGCCCTGTCCTG  300

seq1  TCCAGAAAATACAGCTAGCTTCCTGTATCTTCTCCCTGACTTACAAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAATACAGCTAGCTTCCTGTATCTTCTCCCTGACTTACAAATTG  350

seq1  TAAGATCTTCATATATTCCCTACATCAGGGAATATGACCTGACTCAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTTCATATATTCCCTACATCAGGGAATATGACCTGACTCAGATG  400

seq1  GTGAGAGAGTGAAAACAATGGTGACACAGAAGAAATAACAAACATTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGTGAAAACAATGGTGACACAGAAGAAATAACAAACATTCAAG  450

seq1  TACAGGTAGACTGGAGTCAGGTGGGTTTTGTGTGCTCCAATGGAACTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTAGACTGGAGTCAGGTGGGTTTTGTGTGCTCCAATGGAACTGTA  500

seq1  GCAACTGCCAAAGACTCAGAACTCCAGTTTGTTAATTGTGTGCAACTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCCAAAGACTCAGAACTCCAGTTTGTTAATTGTGTGCAACTAAA  550

seq1  TGGGGAGGAACCTGACTCCACTGGTCATCTCTTAAAGGGACAAGTCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGAACCTGACTCCACTGGTCATCTCTTAAAGGGACAAGTCTCAG  600

seq1  ACTGCAAACATGAGAGAGGAAGAATGTGCAGTTCCTAGTTTTTGATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAACATGAGAGAGGAAGAATGTGCAGTTCCTAGTTTTTGATATAT  650

seq1  TGATCTATCCATTGCTCATAAACACTCATATCTGCACACACTATCAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTATCCATTGCTCATAAACACTCATATCTGCACACACTATCAATAT  700

seq1  TCACACTTGGACCAGAGGAAAGCTTTGCAATTCCTCTAATCCTGACCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTGGACCAGAGGAAAGCTTTGCAATTCCTCTAATCCTGACCCAA  750

seq1  GAGTAATATATTGTCAATTTCCCAGGGGTCTGAGGCATTCTTCCTTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATATATTGTCAATTTCCCAGGGGTCTGAGGCATTCTTCCTTGTCA  800

seq1  TGTCCATTCCTATGTCAAACAATACACAATCATTAGGAAATTCATCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTCCTATGTCAAACAATACACAATCATTAGGAAATTCATCTACT  850

seq1  CTTTACAGGGTTACTTAGAACTTTCTTGGCTTCCACAATTATTACCCATG  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTTACAGGGTTACTTAGAACTTTCTGGGCTTCCACAATTATTACCCATG  900

seq1  GACATAATTACAACACAAATATTTCAGAGGTAACTCAATGTTTTGGGATT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACATAATTACAACACAAATATTTCAGAGGTAACTCAATGTTTGGGGATT  950

seq1  GGGTTTAATGCCTGATCTGTGGAAGGAA-TTCA-TTTTCTGGTTATTAAT  998
      |||||||||||||||||||| ||||||| |||| ||||||||||||| ||
seq2  GGGTTTAATGCCTGATCTGTTGAAGGAATTTCATTTTTCTGGTTATTTAT  1000

seq1  ATGGG-CAATAACCCA-TACTAGGAGCTG--ATAGACT--CTAGAGGTAA  1042
      ||||| |||||||||| ||||||||||||  ||  |||   ||||| |||
seq2  ATGGGCCAATAACCCATTACTAGGAGCTGTAATGAACTTCTTAGAGTTAA  1050

seq1  ACATATGATTATTTTCCTCGGTGAAC-ATGGTATTAAAAATCCCTTATAA  1091
        ||||||||||||  ||| |||||| ||||||||||||   ||||||||
seq2  CAATATGATTATTT--CTC-GTGAACAATGGTATTAAAA--TCCTTATAA  1095

seq1  CAGTGATTAATACAA  1106
      |||||||| ||||||
seq2  CAGTGATTTATACAA  1110


seq1: chr3_75986294_75987433
seq2: B6Ng01-204P05.g_64_1201 (reverse)

seq1  CTAGTGCACTCTGTTTCATTTTTTGTTAGAATCTTGTAATAATTTCAAGC  50
      |||||||| |||| | |||||||   ||||  |||||||||||| || ||
seq2  CTAGTGCAATCTGGTACATTTTT--GTAGATCCTTGTAATAATTCCAGGC  48

seq1  ATGCATTGCCCCATAATGCAT-GAACACATTGCCCTTTCTATTAACTACT  99
      ||||||||||||||||||||| ||||||| ||||||||||||| ||||||
seq2  ATGCATTGCCCCATAATGCATGGAACACA-TGCCCTTTCTATT-ACTACT  96

seq1  ATCAAGTTTGACTA-TCTCAAATCCCTTCCTACTTTCCTAAAGTATAATT  148
      ||| |||||||||| ||||||||||||  ||||||| |||||||||||||
seq2  ATC-AGTTTGACTATTCTCAAATCCCT--CTACTTT-CTAAAGTATAATT  142

seq1  ACACACTTTATCTATGCAATC-TTTGTGTT-ATATTCCGAAG-AGCAGTG  195
      |||||| |||||||||||||| |||||||| ||||||||||| |||||||
seq2  ACACAC-TTATCTATGCAATCTTTTGTGTTAATATTCCGAAGAAGCAGTG  191

seq1  GT-GATTTCCTGCTCTCCATTGTGTAGTCTAGCATTAC-GGCCAAACCGA  243
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGGATTTCCTGCTCTCCATTGTGTAGTCTAGCATTACGGGCCAAACCGA  241

seq1  ATTTACTTAGATCATTCTAAATTCTATTAATAAAATTTTATAAAGAAATA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAGATCATTCTAAATTCTATTAATAAAATTTTATAAAGAAATA  291

seq1  TCTTAGATGTTTTTTTCTGTAACCTAATTATGCCTTTCTTTTCAAATTCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGATGTTTTTTTCTGTAACCTAATTATGCCTTTCTTTTCAAATTCT  341

seq1  GCTGCCTTTCTTCAGTTTGAATATTTTCCTCTTGGGAAACTAAAATGTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTTCTTCAGTTTGAATATTTTCCTCTTGGGAAACTAAAATGTTT  391

seq1  TGGTGTTGCCTTGTTCTGTTTTGAAGATGTAATATTTCTACAAATGAAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGCCTTGTTCTGTTTTGAAGATGTAATATTTCTACAAATGAAAG  441

seq1  ACAGTTCTTAGCATATCAGTATATTTATGTATAGAAATATAAAATCAACT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTTAGCATATCAGTATATTTATGTATAGAAATATAAAATCAACT  491

seq1  AAATACAAATCTATTCTTGATGTTTATATTTTATGTATGGGCTTTAATAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAATCTATTCTTGATGTTTATATTTTATGTATGGGCTTTAATAT  541

seq1  AAAATTTATATTAGCAGAGAAAAATATAATAATAAAAATCTGTGTTCCCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATATTAGCAGAGAAAAATATAATAATAAAAATCTGTGTTCCCA  591

seq1  AACATTTAAAAATTACTTTCATTGTCATTTCTTTCTTTTTCTTTAAAAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAAAAATTACTTTCATTGTCATTTCTTTCTTTTTCTTTAAAAAG  641

seq1  CCATTTAATATGTACACAAATAGGACTTTATCATATTTCTGCTTCTCTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAATATGTACACAAATAGGACTTTATCATATTTCTGCTTCTCTCT  691

seq1  TTCATGTCCACAAGCATATATCCCCACTTATATGCACAGGAAATGTACTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCCACAAGCATATATCCCCACTTATATGCACAGGAAATGTACTG  741

seq1  AAGTAGCAATGTGGTGCATCTCTGAATAATATTCATTGAGCTAACATAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCAATGTGGTGCATCTCTGAATAATATTCATTGAGCTAACATAGT  791

seq1  CATGGAAGCTAAATTATATATATTCTAGCCTGAATCTTAGGTTACATGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGCTAAATTATATATATTCTAGCCTGAATCTTAGGTTACATGTG  841

seq1  TGCCTTAGGAAAATCTTAGAGTGAAAGAAGTTAGAAATTGAAAAATGACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGGAAAATCTTAGAGTGAAAGAAGTTAGAAATTGAAAAATGACT  891

seq1  CTGAAAGAATACTGGCTGATATTTTCAGCAATTATAGACTAGGACATGAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAATACTGGCTGATATTTTCAGCAATTATAGACTAGGACATGAT  941

seq1  GGTGGCACCTATAGGTAATTGATCACATTGTAAATGATAAAAATGGAACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACCTATAGGTAATTGATCACATTGTAAATGATAAAAATGGAACA  991

seq1  TTAAATCCTTATAAAAATCCTCTATTGATTATTTTTAGATAATACAGTAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCTTATAAAAATCCTCTATTGATTATTTTTAGATAATACAGTAC  1041

seq1  CCAGTAGAATTCTATTGTTATTTCCTGTATTAATTCTCCACCCATTTCTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGAATTCTATTGTTATTTCCTGTATTAATTCTCCACCCATTTCTT  1091

seq1  TTCTGAAACTAGTGAATGTCTAAATGATTTTGCTTTCATTAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACTAGTGAATGTCTAAATGATTTTGCTTTCATTAGAATTC  1138


| Home | SequenceCutter | Blast | Download |