BAC Information

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BAC

Clone NameB6Ng01-205M19
Chromosome3 (Build37)
Map Location 80,997,077 - 81,185,896
singlet/doubletdoublet
Overlap genePdgfc
Upstream geneEG626797, Gria2, Glrb, EG626841
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205M19.bB6Ng01-205M19.g
ACCGA025383GA025384
length1,141535
definitionB6Ng01-205M19.b B6Ng01-205M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,997,077 - 80,998,218)(81,185,356 - 81,185,896)
sequence
gaattcatcatcagtatcctagagtgggccataatagttacatggaacat
tctattgaataaattaccttcctgcttactcccctttaaaagccacatct
tactatatcaacggatagtagagttttctcagaagtgtgggtgtcctgca
gtaatgcttcacagaagtgttttgtgttttttgttgccattggtgatttt
tgttacctgtctaaatatcgactgtgtgatgcaatccctttttaatggag
tgtctgacatgagagaacacaatgcagggacaaaacattggttattctat
ttcaggactgttcagatctgagaaagaacacgaaagacatcatagcagaa
taggaatgttatagagtagtttcaaaatgtgaaaatagatgatataatca
aaataattgccacttgtaccttatcatcctgttgacgtgagaaatgcatg
ctcacttgctacattgtgggcatcttttgaaatgcaatgctctgtaatta
aggtagtcacattcaggaagcagattaatgaaatcatgatttttggtgtg
atggtgttttatttcctgtaaagacaagcagcgagtatggattcagaaac
tgatagaggggatgtgaactaaagaaattacaattgttttttttaagttt
cttagcacagaggtcatcatagccacaaaacagactaaaatgccatttca
ggaatcactatggtgaaacactaatttccccttccagcacaacaactagt
gaatgtaaatctgagttagcagagacaaatgtgtgggcatagatctcctc
tgtggagcaggacaagctgtggtttgccctgtgcatacaccaagtactgg
gaggagatgtcatgacacaccaatgggtcatacacttcttacacacagac
catcataagtatcaagttatgtttgaataattgtttaccattgctaaata
ttactgtgtagataattaagtacattatccatgaaattttctaagcatag
aaggagctgatttgctaaatttttactataatttttattattaaatcata
cctttaatacaatttcctaggcacatgtttttttacaccttgcttggaac
ctatatctctgccgaatgtatacacaaaagtaaggccatga
atttctggatatcccattgaaatgggtcaaaatcccaatccaagagaatt
cttgatatatgaaaagtataacattttcctaggatgcgcttactcactct
tcctgtaatacttgttacatgttccctgaaaaataactttataaattact
gttttgattaatgagatctacacttcgattcattaaaaagaaagaggctc
ccgctcccagagtttaacctttccgagagtcttaaagtgtgttcaaggga
gtcagacataacttttagaatttcttttgtttagatagtggtttagttcc
agggagctctggaaatactgactagttcatattgttgttcctcctatggg
gctgcaaaccccttcaaacccctggctctagctacatatgtagcagagga
tgacctagtcagtcatcaatgggaggagagacccttggtcctgtgaagat
tctatgccccagtataggggaataccaggaccaggaagcaggagtgggtg
ggttggtaagctgaaggagggggaggtataggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80997077_80998218
seq2: B6Ng01-205M19.b_45_1185

seq1  GAATTCATCATCAGTATCCTAGAGTGGGCCATAATAGTTACATGGAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATCAGTATCCTAGAGTGGGCCATAATAGTTACATGGAACAT  50

seq1  TCTATTGAATAAATTACCTTCCTGCTTACTCCCCTTTAAAAGCCACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGAATAAATTACCTTCCTGCTTACTCCCCTTTAAAAGCCACATCT  100

seq1  TACTATATCAACGGATAGTAGAGTTTTCTCAGAAGTGTGGGTGTCCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATCAACGGATAGTAGAGTTTTCTCAGAAGTGTGGGTGTCCTGCA  150

seq1  GTAATGCTTCACAGAAGTGTTTTGTGTTTTTTGTTGCCATTGGTGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCTTCACAGAAGTGTTTTGTGTTTTTTGTTGCCATTGGTGATTTT  200

seq1  TGTTACCTGTCTAAATATCGACTGTGTGATGCAATCCCTTTTTAATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCTGTCTAAATATCGACTGTGTGATGCAATCCCTTTTTAATGGAG  250

seq1  TGTCTGACATGAGAGAACACAATGCAGGGACAAAACATTGGTTATTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACATGAGAGAACACAATGCAGGGACAAAACATTGGTTATTCTAT  300

seq1  TTCAGGACTGTTCAGATCTGAGAAAGAACACGAAAGACATCATAGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACTGTTCAGATCTGAGAAAGAACACGAAAGACATCATAGCAGAA  350

seq1  TAGGAATGTTATAGAGTAGTTTCAAAATGTGAAAATAGATGATATAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGTTATAGAGTAGTTTCAAAATGTGAAAATAGATGATATAATCA  400

seq1  AAATAATTGCCACTTGTACCTTATCATCCTGTTGACGTGAGAAATGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTGCCACTTGTACCTTATCATCCTGTTGACGTGAGAAATGCATG  450

seq1  CTCACTTGCTACATTGTGGGCATCTTTTGAAATGCAATGCTCTGTAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGCTACATTGTGGGCATCTTTTGAAATGCAATGCTCTGTAATTA  500

seq1  AGGTAGTCACATTCAGGAAGCAGATTAATGAAATCATGATTTTTGGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTCACATTCAGGAAGCAGATTAATGAAATCATGATTTTTGGTGTG  550

seq1  ATGGTGTTTTATTTCCTGTAAAGACAAGCAGCGAGTATGGATTCAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTTTATTTCCTGTAAAGACAAGCAGCGAGTATGGATTCAGAAAC  600

seq1  TGATAGAGGGGATGTGAACTAAAGAAATTACAATTGTTTTTTTTAAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAGGGGATGTGAACTAAAGAAATTACAATTGTTTTTTTTAAGTTT  650

seq1  CTTAGCACAGAGGTCATCATAGCCAC-AAACAGACTAAAATGCCATTTCA  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTAGCACAGAGGTCATCATAGCCACAAAACAGACTAAAATGCCATTTCA  700

seq1  GGAATCACTATGGTGAAACACTAATTTCCCCTTCCAGCACAACAACTAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACTATGGTGAAACACTAATTTCCCCTTCCAGCACAACAACTAGT  750

seq1  GAATGTAAATCTGAGTTAGCAGAGACAAATGTGTGGGCATAGATCTCCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAATCTGAGTTAGCAGAGACAAATGTGTGGGCATAGATCTCCTC  800

seq1  TGTGGAGCAGGACAAGCTGTGGTTTGCCCTGTGCATACACCAAGTACTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCAGGACAAGCTGTGGTTTGCCCTGTGCATACACCAAGTACTGG  850

seq1  GAGGAGATGTCATGACACACCAATGGGTCATACACTTCTTACAACACAGA  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGGAGATGTCATGACACACCAATGGGTCATACACTTCTTAC-ACACAGA  899

seq1  CCATCATAAGTTATCAAGTTATGTTTGAATAATTGTTTACCATTGCTAAA  949
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  CCATCATAAG-TATCAAGTTATGTTTGAATAATTGTTTACCATTGCT-AA  947

seq1  ATATTACTGTGTAGATAATTAAGTACATTATCCATGAAATTTTCTAAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTGTGTAGATAATTAAGTACATTATCCATGAAATTTTCTAAGCA  997

seq1  TAGAAAGAGCTGATTTGCTAAAATTTTTAACTATTAATTTTTAATTATTA  1049
      ||||| ||||||||||||||||  |||| |||| |||||||| |||||||
seq2  TAGAAGGAGCTGATTTGCTAAA--TTTTTACTA-TAATTTTT-ATTATTA  1043

seq1  AATCATAACTTTATTACCAATTTCCTAGGCACATG-TTTTTTACA-CTTG  1097
      ||||||| ||||| || |||||||||||||||||| ||||||||| ||||
seq2  AATCATACCTTTAATA-CAATTTCCTAGGCACATGTTTTTTTACACCTTG  1092

seq1  CTTGGAACCTATATCCCTGCAG-ATGTAT--ACAAAAGTAA-GCCATGA  1142
      ||||||||||||||| |||| | ||||||  |||||||||| |||||||
seq2  CTTGGAACCTATATCTCTGCCGAATGTATACACAAAAGTAAGGCCATGA  1141

seq1: chr3_81185356_81185896
seq2: B6Ng01-205M19.g_69_609 (reverse)

seq1  CCCCCTATACCTCCCCCTCCTTCAGCTTACCAACCCACCCACTCCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTATACCTCCCCCTCCTTCAGCTTACCAACCCACCCACTCCTGCTT  50

seq1  CCTGGTCCTGGTATTCCCCTATACTGGGGCATAGAATCTTCACAGGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTGGTATTCCCCTATACTGGGGCATAGAATCTTCACAGGACCA  100

seq1  AGGGTCTCTCCTCCCATTGATGACTGACTAGGTCATCCTCTGCTACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCTCCTCCCATTGATGACTGACTAGGTCATCCTCTGCTACATAT  150

seq1  GTAGCTAGAGCCAGGGGTTTGAAGGGGTTTGCAGCCCCATAGGAGGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAGAGCCAGGGGTTTGAAGGGGTTTGCAGCCCCATAGGAGGAACA  200

seq1  ACAATATGAACTAGTCAGTATTTCCAGAGCTCCCTGGAACTAAACCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGAACTAGTCAGTATTTCCAGAGCTCCCTGGAACTAAACCACTA  250

seq1  TCTAAACAAAAGAAATTCTAAAAGTTATGTCTGACTCCCTTGAACACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAAAAGAAATTCTAAAAGTTATGTCTGACTCCCTTGAACACACT  300

seq1  TTAAGACTCTCGGAAAGGTTAAACTCTGGGAGCGGGAGCCTCTTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACTCTCGGAAAGGTTAAACTCTGGGAGCGGGAGCCTCTTTCTTTT  350

seq1  TAATGAATCGAAGTGTAGATCTCATTAATCAAAACAGTAATTTATAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATCGAAGTGTAGATCTCATTAATCAAAACAGTAATTTATAAAGT  400

seq1  TATTTTTCAGGGAACATGTAACAAGTATTACAGGAAGAGTGAGTAAGCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCAGGGAACATGTAACAAGTATTACAGGAAGAGTGAGTAAGCGC  450

seq1  ATCCTAGGAAAATGTTATACTTTTCATATATCAAGAATTCTCTTGGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGAAAATGTTATACTTTTCATATATCAAGAATTCTCTTGGATTG  500

seq1  GGATTTTGACCCATTTCAATGGGATATCCAGAAATGAATTC  541
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGACCCATTTCAATGGGATATCCAGAAATGAATTC  541