BAC Information

Click to search

BAC

Clone NameB6Ng01-207K01
Chromosome3 (Build37)
Map Location 148,436,994 - 148,584,281
singlet/doubletdoublet
Overlap geneLphn2
Upstream geneLOC100040354
Downstream geneLOC100040368, LOC668893, EG381483, LOC100040620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207K01.bB6Ng01-207K01.g
ACCGA026724GA026725
length1,0421,084
definitionB6Ng01-207K01.b B6Ng01-207K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,583,250 - 148,584,281)(148,436,994 - 148,438,080)
sequence
gaattcaaaggaaagggggcaatggaaccctacgagtgtacttaaaactt
taggtttctgaaaatgttaaagttaaaatgcctttttgctcaatgagcaa
ataatttttttttgtacacatcctaccaaaacacaaatatcttggttgcc
cgtggcttaaactcttaactcagcaggctgcatgttctctctccccacaa
atccctgcggcaagtgaccttgtcaaacaagtgtggcataatgggagtca
gcccagggaaggtggctcattttctagcaactgtttgctgctgtcagaac
aaaggcacatcggtttgcattaggaggacacagcacgcagatgaacaact
gcctcctgtttcccaaataatactcatctttcaggtttccttgaaaatct
gactaatggaagcggtacgcatggcagatattctaggagggacatgaatt
ctgccatggcctcagtgaacttgaggtattttactacctagcatatgtca
tatttatttttagagccacatttattggaaccataaacttgcaaagtgca
gggcagcactttcattggttttctttgagactcttagttttgttttttgt
ttgtttgtttgtttgtttgtttgttttaaatctcggcagagggaagtgga
ggtgttttagagaagtcagagcttaatttttcatttacttatttattctt
tactacaggcatctgtagttagctagataggtagatatattgccttttag
aagttattgagtgtaacttatttgcctaatagcaattacaatcattaaaa
tgtttaccaggtatgtttaatttatgagtttatgcctgacaccagcaatt
tgatctcagttgaaagggaggaaatatatttgcatgttttatctaacttt
ttcttctaaaaatgagtagtcatgtttcttacacaatctaaatgtttcac
tgggcttgcgatagatagtaagacaccatgtatttgggtacgtagtggtt
tagccctgaagaattgttctgcttcttagcttggagctttgc

gaattccatctcagaaaatgctcctaaggggctaattttattttccccac
tcttctatgaatattcacttctttatgggagaaagacatttgagggcttt
cctatgtttcttctaccaactcaatccaattgtgagaagcacagagagat
ggaccttttccaaaggaaggtgtgcacaaactgtgtgcatactgtagcct
cctggtctcaacaccagtgcactcactgtgtgcccagcataggcctccct
gttcttagcacccatcgaccttgggggttagcaagacacatgacaacact
gacagagaggcttgaaatgtatgggattggcacttccctttctaggctct
ccaaacatcccagcttctcctgtgatgtgttccccatctggcttcatgtt
ggggcagctcaccaaacttttttttcttctcccagacctggccttcaccc
tggcactgaaggtgaggaagaacaagggtgacattccctgattactgtgc
cctgaacataataggaaactggacaaaaccactgacagattggctggtgt
tggcaccaggttccatgagaccttcccagatcgtctataatgtgctttaa
ctgtcctgaatgacgttatcccagggcccaggtcctcagcaggttttaca
ggaatcagtcagcctctgtacttgtagactaggtaccagctgtatgcttc
gttctgggcttgctaactgggcatacagaatgagctctttgtcatttcta
cattctttgcatctctgacgctggacagatgaggaatggcaagctacaga
cggacgtaacaaattacccataaaatatattcataatcatctgataacca
aaaatgggaagcaggccaccgatcacatttaaacttctgttgccttggca
aagactgttaaattaacccttgaaaacaccatagtcccttggtagttcac
agaaaaaacaacttttcctgttccagcaccatggctgcttctctcttgct
tctcctctttccccgtctgtctcagcatgccacttgctgtcactcagctt
ttttcctatcaagcacgcttccttcagattctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148583250_148584281
seq2: B6Ng01-207K01.b_46_1087 (reverse)

seq1  GCAAAGCTCC-AGCTAAG-AGCAGAAC-ATTCTTCA-GGCT-AACCACTA  45
      |||||||||| ||||||| |||||||| |||||||| |||| ||||||||
seq2  GCAAAGCTCCAAGCTAAGAAGCAGAACAATTCTTCAGGGCTAAACCACTA  50

seq1  CGTACCC-AATACATGGTGTCTTACTATCTATCGCAAG-CCAGTGAAACA  93
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  CGTACCCAAATACATGGTGTCTTACTATCTATCGCAAGCCCAGTGAAACA  100

seq1  TTTAGATTGTGTAAGAAACATGACTACTCATTTTTAGAAGAAAAAGTTAG  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTGTGTAAGAAACATGACTACTCATTTTTAGAAGAAAAAGTTAG  150

seq1  ATAAAACATGCAAATATATTTCCTCCCTTTCAACTGAGATCAAATTGCTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATGCAAATATATTTCCTCCCTTTCAACTGAGATCAAATTGCTG  200

seq1  GTGTCAGGCAT-AACTCAT-AATTAAACATACCTGGTAAACATTTTAATG  241
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GTGTCAGGCATAAACTCATAAATTAAACATACCTGGTAAACATTTTAATG  250

seq1  ATTGTAATTGCTATTAGGCAAATAAGTTACACTCAATAACTTCT-AAAGG  290
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTGTAATTGCTATTAGGCAAATAAGTTACACTCAATAACTTCTAAAAGG  300

seq1  CAATATATCTACCTATCTAGCTAACTACAGATGCCTGTAGTAAAGAATAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATCTACCTATCTAGCTAACTACAGATGCCTGTAGTAAAGAATAA  350

seq1  ATAAGTAAATGAAAAATTAAGCTCTGACTTCTCTAAAACACCTCCACTTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAATGAAAAATTAAGCTCTGACTTCTCTAAAACACCTCCACTTC  400

seq1  CCTCTGCCGAGATTTAAAACAAACAAACAAACAAACAAACAAACAAAAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCGAGATTTAAAACAAACAAACAAACAAACAAACAAACAAAAAA  450

seq1  CAAAACTAAGAGTCTCAAAGAAAACCAATGAAAGTGCTGCCCTGCACTTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAAGAGTCTCAAAGAAAACCAATGAAAGTGCTGCCCTGCACTTT  500

seq1  GCAAGTTTATGGTTCCAATAAATGTGGCTCTAAAAATAAATATGACATAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTATGGTTCCAATAAATGTGGCTCTAAAAATAAATATGACATAT  550

seq1  GCTAGGTAGTAAAATACCTCAAGTTCACTGAGGCCATGGCAGAATTCATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTAGTAAAATACCTCAAGTTCACTGAGGCCATGGCAGAATTCATG  600

seq1  TCCCTCCTAGAATATCTGCCATGCGTACCGCTTCCATTAGTCAGATTTTC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTAGAATATCTGCCATGCGTACCGCTTCCATTAGTCAGATTTTC  650

seq1  AAGGAAACCTGAAAGATGAGTATTATTTGGGAAACAGGAGGCAGTTGTTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACCTGAAAGATGAGTATTATTTGGGAAACAGGAGGCAGTTGTTC  700

seq1  ATCTGCGTGCTGTGTCCTCCTAATGCAAACCGATGTGCCTTTGTTCTGAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCGTGCTGTGTCCTCCTAATGCAAACCGATGTGCCTTTGTTCTGAC  750

seq1  AGCAGCAAACAGTTGCTAGAAAATGAGCCACCTTCCCTGGGCTGACTCCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAACAGTTGCTAGAAAATGAGCCACCTTCCCTGGGCTGACTCCC  800

seq1  ATTATGCCACACTTGTTTGACAAGGTCACTTGCCGCAGGGATTTGTGGGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCCACACTTGTTTGACAAGGTCACTTGCCGCAGGGATTTGTGGGG  850

seq1  AGAGAGAACATGCAGCCTGCTGAGTTAAGAGTTTAAGCCACGGGCAACCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAACATGCAGCCTGCTGAGTTAAGAGTTTAAGCCACGGGCAACCA  900

seq1  AGATATTTGTGTTTTGGTAGGATGTGTACAAAAAAAAATTATTTGCTCAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTGTGTTTTGGTAGGATGTGTACAAAAAAAAATTATTTGCTCAT  950

seq1  TGAGCAAAAAGGCATTTTAACTTTAACATTTTCAGAAACCTAAAGTTTTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAAAGGCATTTTAACTTTAACATTTTCAGAAACCTAAAGTTTTA  1000

seq1  AGTACACTCGTAGGGTTCCATTGCCCCCTTTCCTTTGAATTC  1032
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTCGTAGGGTTCCATTGCCCCCTTTCCTTTGAATTC  1042


seq1: chr3_148436994_148438080
seq2: B6Ng01-207K01.g_66_1149

seq1  GAATTCCATCTCAGAAAATGCTCCTAAGGGGCTAATTTTATTTTCCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCAGAAAATGCTCCTAAGGGGCTAATTTTATTTTCCCCAC  50

seq1  TCTTCTATGAATATTCACTTCTTTATGGGAGAAAGACATTTGAGGGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATGAATATTCACTTCTTTATGGGAGAAAGACATTTGAGGGCTTT  100

seq1  CCTATGTTTCTTCTACCAACTCAATCCAATTGTGAGAAGCACAGAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTTCTTCTACCAACTCAATCCAATTGTGAGAAGCACAGAGAGAT  150

seq1  GGACCTTTTCCAAAGGAAGGTGTGCACAAACTGTGTGCATACTGTAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTTTCCAAAGGAAGGTGTGCACAAACTGTGTGCATACTGTAGCCT  200

seq1  CCTGGTCTCAACACCAGTGCACTCACTGTGTGCCCAGCATAGGCCTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTCAACACCAGTGCACTCACTGTGTGCCCAGCATAGGCCTCCCT  250

seq1  GTTCTTAGCACCCATCGACCTTGGGGGTTAGCAAGACACATGACAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGCACCCATCGACCTTGGGGGTTAGCAAGACACATGACAACACT  300

seq1  GACAGAGAGGCTTGAAATGTATGGGATTGGCACTTCCCTTTCTAGGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGGCTTGAAATGTATGGGATTGGCACTTCCCTTTCTAGGCTCT  350

seq1  CCAAACATCCCAGCTTCTCCTGTGATGTGTTCCCCATCTGGCTTCATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATCCCAGCTTCTCCTGTGATGTGTTCCCCATCTGGCTTCATGTT  400

seq1  GGGGCAGCTCACCAAACTTTTTTTTCTTCTCCCAGACCTGGCCTTCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCTCACCAAACTTTTTTTTCTTCTCCCAGACCTGGCCTTCACCC  450

seq1  TGGCACTGAAGGTGAGGAAGAACAAGGGTGACATTCCCTGATTACTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGAAGGTGAGGAAGAACAAGGGTGACATTCCCTGATTACTGTGC  500

seq1  CCTGAACATAATAGGAAACTGGACAAAACCACTGACAGATTGGCTGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACATAATAGGAAACTGGACAAAACCACTGACAGATTGGCTGGTGT  550

seq1  TGGCACCAGGTTCCATGAGACCTTCCCAGATCGTCTATAATGTGCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCAGGTTCCATGAGACCTTCCCAGATCGTCTATAATGTGCTTTAA  600

seq1  CTGTCCTGAATGACGTTATCCCAGGGCCCAGGTCCTCAGCAGGTTTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGAATGACGTTATCCCAGGGCCCAGGTCCTCAGCAGGTTTTACA  650

seq1  GGAATCAGTCAGCCTCTGTACTTGTAGACTAGGTACCAGCTGTATGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGTCAGCCTCTGTACTTGTAGACTAGGTACCAGCTGTATGCTTC  700

seq1  GTTCTGGGCTTGCTAACTGGGCATACAGAATGAGCTCTTTGTCATTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGCTTGCTAACTGGGCATACAGAATGAGCTCTTTGTCATTTCTA  750

seq1  CATTCTTTGCATCTCTGACGCTGGACAGATGAGGAATGGCAAGCTACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTGCATCTCTGACGCTGGACAGATGAGGAATGGCAAGCTACAGA  800

seq1  CGGACGTAACAAATTACCCATAAAATATATTCATAATCATCTGATAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACGTAACAAATTACCCATAAAATATATTCATAATCATCTGATAACCA  850

seq1  AAAATGGGAAGCAGGCCACCGATCACA-TTAAACTTCTGTTGCCTTGGCA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAATGGGAAGCAGGCCACCGATCACATTTAAACTTCTGTTGCCTTGGCA  900

seq1  AAGACTGTTAAATTAA-CCTTGAAAACACCCATAGTCCCTTGGTAGTTCA  948
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  AAGACTGTTAAATTAACCCTTGAAAACA-CCATAGTCCCTTGGTAGTTCA  949

seq1  CAG-AAAAACAACTTTTCCTG-TCCAGCACCATGGCTGCTTCTCCTCTTG  996
      ||| ||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  CAGAAAAAACAACTTTTCCTGTTCCAGCACCATGGCTGCTTCT-CTCTTG  998

seq1  CCTTCTCTCCTTTCCCCTTCTGTCTCAGCAATTGCCACTTGCTGTCACTC  1046
       ||||||  |||||||| ||||||||||||  ||||||||||||||||||
seq2  -CTTCTCCTCTTTCCCCGTCTGTCTCAGCA--TGCCACTTGCTGTCACTC  1045

seq1  AGCCTTTTTTCTATCAGGGCACGCTTTCTTCAGAATTCTGT  1087
      ||| ||||| ||||||  |||||||| |||||| |||||||
seq2  AGCTTTTTTCCTATCA-AGCACGCTTCCTTCAG-ATTCTGT  1084


| Home | SequenceCutter | Blast | Download |