BAC Information

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BAC

Clone NameB6Ng01-207M01
Chromosome3 (Build37)
Map Location 40,726,642 - 40,859,132
singlet/doubletdoublet
Overlap gene3110057O12Rik, Larp2
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 1700034I23Rik
Downstream genePgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207M01.bB6Ng01-207M01.g
ACCGA026817GA026818
length8981,065
definitionB6Ng01-207M01.b B6Ng01-207M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,858,577 - 40,859,132)(40,726,642 - 40,727,711)
sequence
gaattctcactcactcagtgctcactgtcatcctccactgagttgtgtcc
ccagtcatgcagcctatgcaatagtcacatcctgctgatgtgacaagatt
ccctgtaaaagcgacttaagagaggaaggttttattccagcttacgattc
aggggtacagtccatcatgacaaggaaatcaaggcggtaggagcttgaag
cagctggatatatggatatagtgtgacctatccacagttaagagcaggga
gcagggggctgagaggcgtctccatgttttagagcactggctgctcttcc
agagcacctgggttcagttcccaggactgacatggtagctcacaaccctc
tgtaactccagttccagggtatctgattgcctcttctgatctctgcaggc
aaaggtatatacatatatatacagatatatatgatggcaacacacacaca
cacacacacacacacacacacacacacacaatttttatgttaaaaaagag
caatgaatgaatgagtccaccagggctccactggctttctccacaatcat
gtggttctgaatctcctgcccagggaaatggttgcatccagaatggaggg
gcttcatagatcaaccaatttcattacaataattcctcacagatattctc
agaggcccttctctcaggtgattctagatctcgtcaaggtgtgaatgaac
actacgttacttttcttttgctgttataaaacatcacaaccaaagcaact
tttaaaagaaagtgtttaatttggtttagggtttcagggcctcagagtcc
aggctggcaaggcaaaggcatggtggcagggacagctcttgatccacaag
taggagggaggagagagagagagagagagagagagagagagagatgag
gaattcactttgtagaccaggctggcctcaaactcagaggctggcctgcc
tcagcctccacctcccaaatgctgggattaaaggtatagcccagctttat
taaaaatataaatgttagccagccatagtgttttatgcctctaatcccag
catttaggaggcagtggctgacagatctctaagttccaggccagtctggt
ctacaaagtgagttctaggacagctggggctacacagagaaaccctgtct
aaaaaagaaaaatcaatacactttaggggttggagagatgactcagcaat
taagagcactaagtactcttccagagaacccaggttcaaatccctgcacc
tacatggcagcttataactgtaactccaaggtctgacatgttcacacagg
tatacatgcagagaaagcaccaatgcacataaaataaaaaatatttggat
agagagatggctcaagcggtaaagggcactggctgctcttccagaggtcc
tgagttcaattccaagcaaccacatggtagattataattattgataatga
attctgatgccctcttctgatatgcagctgtatgtgcagatagagccctc
ataaataaaatagatctttcaataaataaatgaattttttaaaaatgtaa
atgcatgaaagaaatcattttctattttattttgcgaggctagaagatcc
agcttaaaaaatgtgtcagacctatttgtgatgggaggcgctcttattct
tgagtctgcagctctcttgcactggctggagagggaaggttatggacctc
ttgggatgactggaatatccatgggaggacatgtgagtttctaaagcttt
tatttcactaccatcatgttataaataggagtaatttcaattgtacttga
agcatgaatttaatgtcagtcaaagtaggaagtagacagtttccaatagg
aagtaacgtacttttgtgtaatttatattagacagcatatatgacaactt
tcagtgtagctcagatttggaatttcatgtttattaagttcgattacatc
atcaatggaggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40858577_40859132
seq2: B6Ng01-207M01.b_40_601 (reverse)

seq1  ATTCAGAACCACATGATTGTGGAGAAAGCCAGTGGAGCCCTGGTGGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAACCACATGATTGTGGAGAAAGCCAGTGGAGCCCTGGTGGACTC  50

seq1  ATTCATTCATTGCTCTTTTTTAACATAAAAAT------TGTGTGTGTGTG  94
      ||||||||||||||||||||||||||||||||      ||||||||||||
seq2  ATTCATTCATTGCTCTTTTTTAACATAAAAATTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTGTGTGTGTGTTGCCATCATATATATCTGTATATATAT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTTGCCATCATATATATCTGTATATATAT  150

seq1  GTATATACCTTTGCCTGCAGAGATCAGAAGAGGCAATCAGATACCCTGGA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACCTTTGCCTGCAGAGATCAGAAGAGGCAATCAGATACCCTGGA  200

seq1  ACTGGAGTTACAGAGGGTTGTGAGCTACCATGTCAGTCCTGGGAACTGAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTTACAGAGGGTTGTGAGCTACCATGTCAGTCCTGGGAACTGAA  250

seq1  CCCAGGTGCTCTGGAAGAGCAGCCAGTGCTCTAAAACATGGAGACGCCTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGCTCTGGAAGAGCAGCCAGTGCTCTAAAACATGGAGACGCCTC  300

seq1  TCAGCCCCCTGCTCCCTGCTCTTAACTGTGGATAGGTCACACTATATCCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCCTGCTCCCTGCTCTTAACTGTGGATAGGTCACACTATATCCA  350

seq1  TATATCCAGCTGCTTCAAGCTCCTACCGCCTTGATTTCCTTGTCATGATG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCAGCTGCTTCAAGCTCCTACCGCCTTGATTTCCTTGTCATGATG  400

seq1  GACTGTACCCCTGAATCGTAAGCTGGAATAAAACCTTCCTCTCTTAAGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTACCCCTGAATCGTAAGCTGGAATAAAACCTTCCTCTCTTAAGTC  450

seq1  GCTTTTACAGGGAATCTTGTCACATCAGCAGGATGTGACTATTGCATAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTACAGGGAATCTTGTCACATCAGCAGGATGTGACTATTGCATAGG  500

seq1  CTGCATGACTGGGGACACAACTCAGTGGAGGATGACAGTGAGCACTGAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGACTGGGGACACAACTCAGTGGAGGATGACAGTGAGCACTGAGT  550

seq1  GAGTGAGAATTC  556
      ||||||||||||
seq2  GAGTGAGAATTC  562

seq1: chr3_40726642_40727711
seq2: B6Ng01-207M01.g_61_1125

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAGGCTGGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAGGCTGGCCTGCC  50

seq1  TCAGCCTCCACCTCCCAAATGCTGGGATTAAAGGTATAGCCCAGCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCACCTCCCAAATGCTGGGATTAAAGGTATAGCCCAGCTTTAT  100

seq1  TAAAAATATAAATGTTAGCCAGCCATAGTGTTTTATGCCTCTAATCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATAAATGTTAGCCAGCCATAGTGTTTTATGCCTCTAATCCCAG  150

seq1  CATTTAGGAGGCAGTGGCTGACAGATCTCTAAGTTCCAGGCCAGTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGAGGCAGTGGCTGACAGATCTCTAAGTTCCAGGCCAGTCTGGT  200

seq1  CTACAAAGTGAGTTCTAGGACAGCTGGGGCTACACAGAGAAACCCTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTTCTAGGACAGCTGGGGCTACACAGAGAAACCCTGTCT  250

seq1  AAAAAAGAAAAATCAATACACTTTAGGGGTTGGAGAGATGACTCAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAATCAATACACTTTAGGGGTTGGAGAGATGACTCAGCAAT  300

seq1  TAAGAGCACTAAGTACTCTTCCAGAGAACCCAGGTTCAAATCCCTGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACTAAGTACTCTTCCAGAGAACCCAGGTTCAAATCCCTGCACC  350

seq1  TACATGGCAGCTTATAACTGTAACTCCAAGGTCTGACATGTTCACACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCAGCTTATAACTGTAACTCCAAGGTCTGACATGTTCACACAGG  400

seq1  TATACATGCAGAGAAAGCACCAATGCACATAAAATAAAAAATATTTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGCAGAGAAAGCACCAATGCACATAAAATAAAAAATATTTGGAT  450

seq1  AGAGAGATGGCTCAAGCGGTAAAGGGCACTGGCTGCTCTTCCAGAGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGGCTCAAGCGGTAAAGGGCACTGGCTGCTCTTCCAGAGGTCC  500

seq1  TGAGTTCAATTCCAAGCAACCACATGGTAGATTATAATTATTGATAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAATTCCAAGCAACCACATGGTAGATTATAATTATTGATAATGA  550

seq1  ATTCTGATGCCCTCTTCTGATATGCAGCTGTATGTGCAGATAGAGCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATGCCCTCTTCTGATATGCAGCTGTATGTGCAGATAGAGCCCTC  600

seq1  ATAAATAAAATAGATCTTTCAATAAATAAATGAATTTTTTAAAAATGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAATAGATCTTTCAATAAATAAATGAATTTTTTAAAAATGTAA  650

seq1  ATGCATGAAAGAAATCATTTTCTATTTTATTTTGCGAGGCTAGAAGATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGAAAGAAATCATTTTCTATTTTATTTTGCGAGGCTAGAAGATCC  700

seq1  AGCTTAAAAAATGTGTCAGACCTATTTGTGATGGGAGGCGCTCTTATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAAAAATGTGTCAGACCTATTTGTGATGGGAGGCGCTCTTATTCT  750

seq1  TGAGTCTGCAGCTCTCTTGCACTGGCTGGAGAGGGAAGGTTATGGACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGCAGCTCTCTTGCACTGGCTGGAGAGGGAAGGTTATGGACCTC  800

seq1  TTGGGATGACTGGAATATCCATGGGAGGACATGTGAGTTTCTAAAGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGACTGGAATATCCATGGGAGGACATGTGAGTTTCTAAAGCTTT  850

seq1  TATTTCACTACCATCATGTTTATAAATAGGAGTAATTTCAATTGTACTTG  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATTTCACTACCATCATG-TTATAAATAGGAGTAATTTCAATTGTACTTG  899

seq1  AAGCATGAATTTAATGTCAGTCAAAGTAGGAAGTAGACAG-TTCCAATAG  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGCATGAATTTAATGTCAGTCAAAGTAGGAAGTAGACAGTTTCCAATAG  949

seq1  GAAGTAACGTAACTTTGTGTAATTTATA-TAGACAAACATATATTGTACA  998
      |||||||||||  ||||||||||||||| ||||| | |||||||   |||
seq2  GAAGTAACGTACTTTTGTGTAATTTATATTAGAC-AGCATATAT--GACA  996

seq1  ACTTCAGGTGTAGCTCAGATTTTGGATTTCATGTTTTATTAAAAGTCGAT  1048
      ||||   ||||||||||||||| | |||||||| |||||| ||  |||||
seq2  ACTTTCAGTGTAGCTCAGATTTGGAATTTCATG-TTTATT-AAGTTCGAT  1044

seq1  TACATCATCAATGGGAGGAGAG  1070
      |||||||||||| |||||||||
seq2  TACATCATCAAT-GGAGGAGAG  1065