BAC Information

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BAC

Clone NameB6Ng01-208K07
Chromosome3 (Build37)
Map Location 144,896,309 - 144,975,107
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208K07.bB6Ng01-208K07.g
ACCGA027470GA027471
length1,1951,124
definitionB6Ng01-208K07.b B6Ng01-208K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,973,910 - 144,975,107)(144,896,309 - 144,897,433)
sequence
gaattcctgcccagtgctctctaactccgtgtgtgtgtgtgcatgtgtgt
gtcttattctcaggaggaagctgtggaggagtgttgcgtctttgaaaatc
aatgcttacatttaaagtatacattactatagagtctgtagaaaacattg
ttctgtgtgtcgagtaaatcattccgacacaagataaatctctgatgtga
catcaagggctgaacttgtcttgggaaaacctgccttgcaggaacgtctc
ttgtttctagtcgtgatttgacctttgtaacaaatgagttgttattagga
agagtattaatctgaaaactcaagaattgatatgtggttttggtatctta
caggtacctcagtatgcttcctccagttttactgaattatagtatttgta
atgaatgacttgaatgaatcggaggcttttgaacagttgtcactcagaga
gttctctgttaatgagccaggagtgcattcctcagatggtctgctcgctg
ctgtgtgttactctttgggtgcttggctacatccttgactgatgacgtag
ataaaactcaagcatcaagacaagttcagctgatctctttttgccttact
gttctatcattatcgtactacaacttcattgtcatgtggtagaatattat
gcaaatttaacaatgaagccaattgaaatattctggaatcctctttttat
ttcgcatgacgtcacagacctgaactgaccacgtgggctttctcagtgac
cctgtgctcaaccctcccatccttgtctatgttgcttgagtcctaactca
ggactgcacccaaaggtcctaactcaggactgcacccaaagtcaacctta
gaagtttgtctttgtatgaaaaacaataaatttaacgtgggatgtttaaa
tactactcagaaatcttcatgtgcgattcttcatgatccttttccattat
cttgtgtttgaggttcttagcttcgttttgtggtttgaatgtttcactct
gttcttagatatacccgtttctggtcacttcaaagtgcagccttttgatt
gatttcctactttcgtctatttttctataattattgagtagtgtcaggct
tttccttacctttgccctactttcctttgctaagttagcccactttggtt
tagatgcatgtaagcctaaatctgccccacgcatgccttagccat
gaattcaaacccattgagttcctggcttccagttttgagcaactcttgaa
tctttttccatatctgcaaaacatgtaagtttcccagacacaaatgtttg
tgctataatctgtcattgggagactgtccttgaagttcatagttctgaat
tcaaatgtcttcattgagccccttgaactaagcccatttctccatctaat
ggatggtcgcaggaactacctcataggatgatggaaacatagaaagtgta
gaccctcggtcactaaaggaagcatcatagcttctaggagatatttgtga
attgactgaatgtgttgaatgaatatacttagggatttttttttagatga
aacactgtgacaagggtgacaaggggaaaagtcatcttttctcacagttc
accacagcagcaggagcttgacacagctggtcccatcacagacatgaagg
ggaaacagaagggagaatgccttgttgatgctcagcctctctttgattcc
tatttaacaaggtccaggattctagtccagtgagcaggtcttactgcctc
aattaaggtattcagacacccaccggaggcatgcctagatgctcaccttc
catgtgattctagattctgaagagctgacaatgaacactaagcatcacac
attacaacgcattcatattgcaaatgtgaatacagatccacttattcagg
aagcacaagtggatgctgcacagacaatgatcaccaggctgacagcccag
gactgtcaatgtactccagggagagagatgtttgggggacttctgccccc
ttacttcctgcttcagcttctcctttccccagagatgatattgagaactg
ggcatgtgcttggctcagtacataatgacatttggaatccattaaactct
ctgtcctggataggattttctggagtctaactcagatatgatttaaatac
tttatcatgcactgacagtccttctcccacaaccctttctccacccctac
ttctcttcccctgactagtccaggctcagaagggaatgatctgaatagaa
cattgaatctgtgtattcattcctgaagatcagagatcttgctgcagtac
tggcctgcttgacatttcgttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144973910_144975107
seq2: B6Ng01-208K07.b_47_1241 (reverse)

seq1  ATGGCTAAGGCACTGCGT-GGGCAGATTTTAGCTTACATGCCATCATAAC  49
      |||||||||||| ||||| ||||||||||  ||||||||| ||||  |||
seq2  ATGGCTAAGGCA-TGCGTGGGGCAGATTTAGGCTTACATG-CATCTAAAC  48

seq1  C-AAGTGGCTTAACTTTAGCAAAAGGAAAGTA-GGCAAAGGTAAGAAAAA  97
      | ||||||  |||| ||||| ||||||||||| |||||||||||| ||||
seq2  CAAAGTGGGCTAAC-TTAGC-AAAGGAAAGTAGGGCAAAGGTAAGGAAAA  96

seq1  GCCTGACACTAACTC-ATAA-TATAGAAAAATAGACGAAAGTAGGAAAAT  145
      |||||||||| |||| |||| |||||||||||||||||||||||| ||||
seq2  GCCTGACACT-ACTCAATAATTATAGAAAAATAGACGAAAGTAGG-AAAT  144

seq1  CAATCAAAAGGCTGCACTTTTGAAGTGACCAGAAACGGTATTATCTTAAG  195
      ||||||||||||||||| ||||||||||||||||||||   |||| ||||
seq2  CAATCAAAAGGCTGCAC-TTTGAAGTGACCAGAAACGGGTATATC-TAAG  192

seq1  AACAGAGTGAAACATTCAAACCACAAAACGAAGCTAAGAACCTCAAACAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTGAAACATTCAAACCACAAAACGAAGCTAAGAACCTCAAACAC  242

seq1  AAGATAATGGAAAAGGATCATGAAGAATCGCACATGAAGATTTCTGAGTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGGAAAAGGATCATGAAGAATCGCACATGAAGATTTCTGAGTA  292

seq1  GTATTTAAACATCCCACGTTAAATTTATTGTTTTTCATACAAAGACAAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAACATCCCACGTTAAATTTATTGTTTTTCATACAAAGACAAAC  342

seq1  TTCTAAGGTTGACTTTGGGTGCAGTCCTGAGTTAGGACCTTTGGGTGCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGGTTGACTTTGGGTGCAGTCCTGAGTTAGGACCTTTGGGTGCAG  392

seq1  TCCTGAGTTAGGACTCAAGCAACATAGACAAGGATGGGAGGGTTGAGCAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTAGGACTCAAGCAACATAGACAAGGATGGGAGGGTTGAGCAC  442

seq1  AGGGTCACTGAGAAAGCCCACGTGGTCAGTTCAGGTCTGTGACGTCATGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCACTGAGAAAGCCCACGTGGTCAGTTCAGGTCTGTGACGTCATGC  492

seq1  GAAATAAAAAGAGGATTCCAGAATATTTCAATTGGCTTCATTGTTAAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAAGAGGATTCCAGAATATTTCAATTGGCTTCATTGTTAAATT  542

seq1  TGCATAATATTCTACCACATGACAATGAAGTTGTAGTACGATAATGATAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATATTCTACCACATGACAATGAAGTTGTAGTACGATAATGATAG  592

seq1  AACAGTAAGGCAAAAAGAGATCAGCTGAACTTGTCTTGATGCTTGAGTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAGGCAAAAAGAGATCAGCTGAACTTGTCTTGATGCTTGAGTTT  642

seq1  TATCTACGTCATCAGTCAAGGATGTAGCCAAGCACCCAAAGAGTAACACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACGTCATCAGTCAAGGATGTAGCCAAGCACCCAAAGAGTAACACA  692

seq1  CAGCAGCGAGCAGACCATCTGAGGAATGCACTCCTGGCTCATTAACAGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCGAGCAGACCATCTGAGGAATGCACTCCTGGCTCATTAACAGAG  742

seq1  AACTCTCTGAGTGACAACTGTTCAAAAGCCTCCGATTCATTCAAGTCATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTGAGTGACAACTGTTCAAAAGCCTCCGATTCATTCAAGTCATT  792

seq1  CATTACAAATACTATAATTCAGTAAAACTGGAGGAAGCATACTGAGGTAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAATACTATAATTCAGTAAAACTGGAGGAAGCATACTGAGGTAC  842

seq1  CTGTAAGATACCAAAACCACATATCAATTCTTGAGTTTTCAGATTAATAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGATACCAAAACCACATATCAATTCTTGAGTTTTCAGATTAATAC  892

seq1  TCTTCCTAATAACAACTCATTTGTTACAAAGGTCAAATCACGACTAGAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAATAACAACTCATTTGTTACAAAGGTCAAATCACGACTAGAAA  942

seq1  CAAGAGACGTTCCTGCAAGGCAGGTTTTCCCAAGACAAGTTCAGCCCTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACGTTCCTGCAAGGCAGGTTTTCCCAAGACAAGTTCAGCCCTTG  992

seq1  ATGTCACATCAGAGATTTATCTTGTGTCGGAATGATTTACTCGACACACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACATCAGAGATTTATCTTGTGTCGGAATGATTTACTCGACACACA  1042

seq1  GAACAATGTTTTCTACAGACTCTATAGTAATGTATACTTTAAATGTAAGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGTTTTCTACAGACTCTATAGTAATGTATACTTTAAATGTAAGC  1092

seq1  ATTGATTTTCAAAGACGCAACACTCCTCCACAGCTTCCTCCTGAGAATAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTCAAAGACGCAACACTCCTCCACAGCTTCCTCCTGAGAATAA  1142

seq1  GACACACACATGCACACACACACACGGAGTTAGAGAGCACTGGGCAGGAA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACATGCACACACACACACGGAGTTAGAGAGCACTGGGCAGGAA  1192

seq1  TTC  1198
      |||
seq2  TTC  1195

seq1: chr3_144896309_144897433
seq2: B6Ng01-208K07.g_63_1186

seq1  GAATTCAAACCCATTGAGTTCCTGGCTTCCAGTTTTGAGCAACTCTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCCATTGAGTTCCTGGCTTCCAGTTTTGAGCAACTCTTGAA  50

seq1  TCTTTTTCCATATCTGCAAAACATGTAAGTTTCCCAGACACAAATGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCATATCTGCAAAACATGTAAGTTTCCCAGACACAAATGTTTG  100

seq1  TGCTATAATCTGTCATTGGGAGACTGTCCTTGAAGTTCATAGTTCTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAATCTGTCATTGGGAGACTGTCCTTGAAGTTCATAGTTCTGAAT  150

seq1  TCAAATGTCTTCATTGAGCCCCTTGAACTAAGCCCATTTCTCCATCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTCTTCATTGAGCCCCTTGAACTAAGCCCATTTCTCCATCTAAT  200

seq1  GGATGGTCGCAGGAACTACCTCATAGGATGATGGAAACATAGAAAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTCGCAGGAACTACCTCATAGGATGATGGAAACATAGAAAGTGTA  250

seq1  GACCCTCGGTCACTAAAGGAAGCATCATAGCTTCTAGGAGATATTTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCGGTCACTAAAGGAAGCATCATAGCTTCTAGGAGATATTTGTGA  300

seq1  ATTGACTGAATGTGTTGAATGAATATACTTAGGGATTTTTTTTTAGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTGAATGTGTTGAATGAATATACTTAGGGATTTTTTTTTAGATGA  350

seq1  AACACTGTGACAAGGGTGACAAGGGGAAAAGTCATCTTTTCTCACAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTGACAAGGGTGACAAGGGGAAAAGTCATCTTTTCTCACAGTTC  400

seq1  ACCACAGCAGCAGGAGCTTGACACAGCTGGTCCCATCACAGACATGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCAGCAGGAGCTTGACACAGCTGGTCCCATCACAGACATGAAGG  450

seq1  GGAAACAGAAGGGAGAATGCCTTGTTGATGCTCAGCCTCTCTTTGATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGAAGGGAGAATGCCTTGTTGATGCTCAGCCTCTCTTTGATTCC  500

seq1  TATTTAACAAGGTCCAGGATTCTAGTCCAGTGAGCAGGTCTTACTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACAAGGTCCAGGATTCTAGTCCAGTGAGCAGGTCTTACTGCCTC  550

seq1  AATTAAGGTATTCAGACACCCACCGGAGGCATGCCTAGATGCTCACCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGTATTCAGACACCCACCGGAGGCATGCCTAGATGCTCACCTTC  600

seq1  CATGTGATTCTAGATTCTGAAGAGCTGACAATGAACACTAAGCATCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATTCTAGATTCTGAAGAGCTGACAATGAACACTAAGCATCACAC  650

seq1  ATTACAACGCATTCATATTGCAAATGTGAATACAGATCCACTTATTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAACGCATTCATATTGCAAATGTGAATACAGATCCACTTATTCAGG  700

seq1  AAGCACAAGTGGATGCTGCACAGACAATGATCACCAGGCTGACAGCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAGTGGATGCTGCACAGACAATGATCACCAGGCTGACAGCCCAG  750

seq1  GACTGTCAATGTACTCCAGGGAGAGAGATGTTTGGGGGACTTCTGCCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCAATGTACTCCAGGGAGAGAGATGTTTGGGGGACTTCTGCCCCC  800

seq1  TTACTTCCTGCTTCAGCTTCTCCTTTCCCCAGAGATGATATTGAGAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCTGCTTCAGCTTCTCCTTTCCCCAGAGATGATATTGAGAACTG  850

seq1  GGCATGTGCTTGGCTCAGGTACATAATGACATTTGGAATCCATTAAACTC  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCATGTGCTTGGCTCA-GTACATAATGACATTTGGAATCCATTAAACTC  899

seq1  TCTGTCCTGGATAGGATTTTCTGGAGTCTAACTCAGATATGATTTAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTGGATAGGATTTTCTGGAGTCTAACTCAGATATGATTTAAATA  949

seq1  CTTTATCATGCACTGACAGTCCTTCTCCCAC-ACCCTTCCTCCACCCCTA  999
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  CTTTATCATGCACTGACAGTCCTTCTCCCACAACCCTTTCTCCACCCCTA  999

seq1  CTTCTCTTCCCCCTGACTAGTCCAGGCTCAGAAGGGAAATGATCTGAATA  1049
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  CTTCTCTT-CCCCTGACTAGTCCAGGCTCAGAAGGG-AATGATCTGAATA  1047

seq1  G-ACATTG-ATCTGTGTA-TCATTCCTGGAGATCCAGAGATC-TGCTGCA  1095
      | |||||| ||||||||| ||||||||| |||| |||||||| |||||||
seq2  GAACATTGAATCTGTGTATTCATTCCTGAAGAT-CAGAGATCTTGCTGCA  1096

seq1  GTACTGCCTTGTCTGGAACATTTCGTTTTC  1125
      |||||| | ||  ||  |||||||||||||
seq2  GTACTGGCCTGCTTG--ACATTTCGTTTTC  1124