BAC Information

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BAC

Clone NameB6Ng01-209H03
Chromosome3 (Build37)
Map Location 124,504,183 - 124,640,540
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4, Ugt8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209H03.bB6Ng01-209H03.g
ACCGA028060GA028061
length1,1911,126
definitionB6Ng01-209H03.b B6Ng01-209H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,504,183 - 124,505,394)(124,639,427 - 124,640,540)
sequence
gaattctctgcttataagtttcccatggatgccaggtgctccacgtttgt
gatttgaaattcaaaaagacatttgtaaagaagtgaaaacacactcaaag
ttgtgttgctcctgggtaacagtggtgaaactgggtttatttgttcctgc
aaaagtgagaaagaacgttctatagcatattgtttctaacagtagggact
gaagctccaagaaattgtgattaggtctctttctggctgcattttctcta
aaggttgtcttttcttaaaacaacaggtcctgcatatagacaaaaagttt
tgctctaaacgagaatatagaaaccattttgaaaggattatattgcaaaa
tatagctttgtagcaacacttcccctatcccaggtaccaacaggcactct
cctaagacattagctgagggtccacatgtaatagacatccgggtgctctt
atgtggtaagcaagtttaaagagtgggtattgatagtcacattttcagct
ccccaccccttccctgtcttctgtccatgaaccaaagagcctgaactctg
ctctaagctcctgctaggctgtctgtctatctgtgctctaacttttctaa
taaacgcctccctctccagctgcctatcttggtgttctccttgaactctg
cccttcaaagcccttcataaccttagtaatttatttcagtatagctgaaa
atcctccccaaacatctttaagacaccacataaaatgttaagaaaaataa
gggcaatcaaatttaacatatataatcaattacaaagggatatcaaatca
gttatgcgtcaataaaatggatgttttaacattggaaaaagcttttgtat
taaaaatcatgactgcattttaatttttgtttcatatttaaaacaattaa
aagcagaaaataaaaaggaatagtagacagaaataatatgaaacaaacaa
atatttttaaaatccaaaaatattgctgtgacatgtatgcttaaatgaaa
gtctgattattgatagtcagaaaatttaaaaaaattatagatatttttcc
tcatttacattcatgctacccaaagtcccgcaactacccccacactcccc
tactccaccacctcccactctggcctggcgttccctgtactgagcattag
ttgcacgacaataggccttctctttccacctaattgccggg

gaattcttcagcactggaagacggtctccttcctatgatttcttgcgcca
gtttgagggtagatactcagccacattatgtgtccctttgataggccctc
accacagtggagatttctgtgactactttctttcagttaaaaggtgagca
tgaataatcttgtaaggtttgtgttgctgaacctatcgcttctctaaagt
gcttttcttggtgaatatctaaaaacaatagatgaagacgaatgccattg
ttggttggtattctaggaaatcaccattgaacatgcaggtgcttatctgt
gaatgccacattgaacacacatctgtattagtggccttaggatgtaatat
cacagaatcactatttgatgggcttaaacaaacagaaatgacttctcaca
ctgtggtaaaatctagaagtaggaaaaaaaatcaaagtacctgcacagac
accttgtcatcaaacctgtatgggcagacttttcttgactatgtccagtt
ttttatattttcgaaatatttgtcctgcatcaatttcacttcagtgtgtt
cctatgctgacaacatatatgtagacgtgtgtgtacatgtgtgtgtatgt
atgtatgtgttcacatgcatgtgtgtatatacatgtacatgtgtgtgtat
gcatgcttggatgtgtgtgcatggtgtgtgtgttttctcctgtctatgtc
tttttcctacatttttccctactatggtttgaataagaatattcccaatt
aagcatgcacatttgaacacttggtctctggttggtgcttctggatcaaa
aaattcaaggaacctttaaggggcacagtgtagctgaaggaagtcatcta
ctagggtatgcttttgagtagatttagctttcacactactgccagttcac
tttctttggtaggagatgtgttctttcagtttcttgctctgatctacttc
cttgcatttccctacccacaacacatgcaatttaaggttgtttcctttcc
tttcttcaattcggtctttttttcacttcttgtctctttgttcttgagaa
tagttctttcctattagaaggttcattgtgagccatactgtcttccaacc
tcaggaattatttttgcttccttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124504183_124505394
seq2: B6Ng01-209H03.b_46_1236

seq1  GAATTCTCTGCTTATAAGTTTCCCATGGATGCCAGGTGCTCCACGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTTATAAGTTTCCCATGGATGCCAGGTGCTCCACGTTTGT  50

seq1  GATTTGAAATTCAAAAAGACATTTGTAAAGAAGTGAAAACACACTCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAAATTCAAAAAGACATTTGTAAAGAAGTGAAAACACACTCAAAG  100

seq1  TTGTGTTGCTCCTGGGTAACAGTGGTGAAACTGGGTTTATTTGTTCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGCTCCTGGGTAACAGTGGTGAAACTGGGTTTATTTGTTCCTGC  150

seq1  AAAAGTGAGAAAGAACGTTCTATAGCATATTGTTTCTAACAGTAGGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAGAAAGAACGTTCTATAGCATATTGTTTCTAACAGTAGGGACT  200

seq1  GAAGCTCCAAGAAATTGTGATTAGGTCTCTTTCTGGCTGCATTTTCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCAAGAAATTGTGATTAGGTCTCTTTCTGGCTGCATTTTCTCTA  250

seq1  AAGGTTGTCTTTTCTTAAAACAACAGGTCCTGCATATAGACAAAAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGTCTTTTCTTAAAACAACAGGTCCTGCATATAGACAAAAAGTTT  300

seq1  TGCTCTAAACGAGAATATAGAAACCATTTTGAAAGGATTATATTGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAACGAGAATATAGAAACCATTTTGAAAGGATTATATTGCAAAA  350

seq1  TATAGCTTTGTAGCAACACTTCCCCTATCCCAGGTACCAACAGGCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTTTGTAGCAACACTTCCCCTATCCCAGGTACCAACAGGCACTCT  400

seq1  CCTAAGACATTAGCTGAGGGTCCACATGTAATAGACATCCGGGTGCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACATTAGCTGAGGGTCCACATGTAATAGACATCCGGGTGCTCTT  450

seq1  ATGTGGTAAGCAAGTTTAAAGAGTGGGTATTGATAGTCACATTTTCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTAAGCAAGTTTAAAGAGTGGGTATTGATAGTCACATTTTCAGCT  500

seq1  CCCCACCCCTTCCCTGTCTTCTGTCCATGAACCAAAGAGCCTGAACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCTTCCCTGTCTTCTGTCCATGAACCAAAGAGCCTGAACTCTG  550

seq1  CTCTAAGCTCCTGCTAGGCTGTCTGTCTATCTGTGCTCTAACTTTTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGCTCCTGCTAGGCTGTCTGTCTATCTGTGCTCTAACTTTTCTAA  600

seq1  TAAACGCCTCCCTCTCCAGCTGCCTATCTTGGTGTTCTCCTTGAACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCCTCCCTCTCCAGCTGCCTATCTTGGTGTTCTCCTTGAACTCTG  650

seq1  CCCTTCAAAGCCCTTCATAACCTTAGTAATTTATTTCAGTATAGCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAAGCCCTTCATAACCTTAGTAATTTATTTCAGTATAGCTGAAA  700

seq1  ATCCTCCCCAAACATCTTTAAGACACCACATAAAATGTTAAGAAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCCAAACATCTTTAAGACACCACATAAAATGTTAAGAAAAATAA  750

seq1  GGGCAATCAAATTTAACATATATAATCAATTACAAAGGGATATCAAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATCAAATTTAACATATATAATCAATTACAAAGGGATATCAAATCA  800

seq1  GTTATGCGTCAATAAAATGGATGTTTTAACATTGGAAAAAGCTTTTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCGTCAATAAAATGGATGTTTTAACATTGGAAAAAGCTTTTGTAT  850

seq1  TAAAAATCATGACTGCATTTTAATTTTTGTTTCATATTTAAAACAATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCATGACTGCATTTTAATTTTTGTTTCATATTTAAAACAATTAA  900

seq1  AAGCAGAAAATAAAAAGGAATAGTAGACAGAAATAATATGAAACAAAACA  950
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AAGCAGAAAATAAAAAGGAATAGTAGACAGAAATAATATGAAACAAA--C  948

seq1  AAATATTTTTAAAAATCCAAAAATATTGCTGTGACATGTATGCTTAAATG  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTT-AAAATCCAAAAATATTGCTGTGACATGTATGCTTAAATG  997

seq1  AAAGTCTGATTATTGATAGTCAGAAAAATTTAAAAAAAATTATTAGATA-  1049
      |||||||||||||||||||||||||||  || |||||||||| |||||| 
seq2  AAAGTCTGATTATTGATAGTCAGAAAA--TTTAAAAAAATTA-TAGATAT  1044

seq1  TTTTCCTCATTTACATTTTCAATGCTACCCCAAAAGTCCCGCAAACCCTA  1099
      |||||||||||||||||    |||||||||  ||||||||||||   |||
seq2  TTTTCCTCATTTACATT---CATGCTACCC--AAAGTCCCGCAA---CTA  1086

seq1  CCCCCCACACTCCCCTACT-CACCCACTCCCACTTCTTGGCCCTGGCGTT  1148
       |||||||||||||||||| ||||  ||||||| |||  | |||||||||
seq2  -CCCCCACACTCCCCTACTCCACCACCTCCCAC-TCT--GGCCTGGCGTT  1132

seq1  CCCCTGTACTGAGGCATATAAAGTTTGCACGACCAATAGGCC-TCTCTTT  1197
       ||||||||||| |||| ||    |||||||| ||||||||| |||||||
seq2  -CCCTGTACTGA-GCAT-TA---GTTGCACGA-CAATAGGCCTTCTCTTT  1175

seq1  CCA-CTAATGGCCGGG  1212
      ||| ||||| ||||||
seq2  CCACCTAATTGCCGGG  1191


seq1: chr3_124639427_124640540
seq2: B6Ng01-209H03.g_65_1190 (reverse)

seq1  AAGAA-GAAGC-AAAATAAATCCTGA-GTTTGAAGGCAGTATGGGCTCCA  47
      ||||| ||||| ||||||| |||||| ||| |||| |||||| |||| ||
seq2  AAGAAGGAAGCAAAAATAATTCCTGAGGTTGGAAGACAGTAT-GGCT-CA  48

seq1  CAATGA--CTTCT-ATA-GAAAG-ACTA-TCTCAAGGAAACAAGGAGAC-  90
      ||||||  ||||| ||| ||||| |||| |||||||  ||||| ||||| 
seq2  CAATGAACCTTCTAATAGGAAAGAACTATTCTCAAG--AACAAAGAGACA  96

seq1  AGAAGTG-AAAAAAGACCGAATGGAAGAAAGG-AAGGAAACAACCTTAAA  138
      ||||||| |||||||||||||| ||||||||| |||||||||||||||||
seq2  AGAAGTGAAAAAAAGACCGAATTGAAGAAAGGAAAGGAAACAACCTTAAA  146

seq1  -TGCATGTGTTGTGGGTAGGGAAATGCAAGG-AGTAGATCAGAGCAAGAA  186
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGCATGTGTTGTGGGTAGGGAAATGCAAGGAAGTAGATCAGAGCAAGAA  196

seq1  ACTGAAAGAACACATCTCCTACCAAAGAAAGTGAACTGGCAGTAGTGTG-  235
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGAAAGAACACATCTCCTACCAAAGAAAGTGAACTGGCAGTAGTGTGA  246

seq1  AAGCTAAATCTACTC-AAAGCATAACCTAGTA-ATGAACTTCCTTCAGCT  283
      ||||||||||||||| |||||||| ||||||| ||| |||||||||||||
seq2  AAGCTAAATCTACTCAAAAGCATACCCTAGTAGATG-ACTTCCTTCAGCT  295

seq1  ACACTGTGCCCCTTAAAGGTTCCTTGAATTTTTTGATCCAGAAGCACCAA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGCCCCTTAAAGGTTCCTTGAATTTTTTGATCCAGAAGCACCAA  345

seq1  CCAGAGACCAAGTGTTCAAATGTGCATGCTTAATTGGGAATATTCTTATT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACCAAGTGTTCAAATGTGCATGCTTAATTGGGAATATTCTTATT  395

seq1  CAAACCATAGTAGGGAAAAATGTAGGAAAAAGACATAGACAGGAGAAAAC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATAGTAGGGAAAAATGTAGGAAAAAGACATAGACAGGAGAAAAC  445

seq1  ACACACACCATGCACACACATCCAAGCATGCATACACACACATGTACATG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCATGCACACACATCCAAGCATGCATACACACACATGTACATG  495

seq1  TATATACACACATGCATGTGAACACATACATACATACACACACATGTACA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACACACATGCATGTGAACACATACATACATACACACACATGTACA  545

seq1  CACACGTCTACATATATGTTGTCAGCATAGGAACACACTGAAGTGAAATT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTCTACATATATGTTGTCAGCATAGGAACACACTGAAGTGAAATT  595

seq1  GATGCAGGACAAATATTTCGAAAATATAAAAAACTGGACATAGTCAAGAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGACAAATATTTCGAAAATATAAAAAACTGGACATAGTCAAGAA  645

seq1  AAGTCTGCCCATACAGGTTTGATGACAAGGTGTCTGTGCAGGTACTTTGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCCCATACAGGTTTGATGACAAGGTGTCTGTGCAGGTACTTTGA  695

seq1  TTTTTTTTCCTACTTCTAGATTTTACCACAGTGTGAGAAGTCATTTCTGT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTACTTCTAGATTTTACCACAGTGTGAGAAGTCATTTCTGT  745

seq1  TTGTTTAAGCCCATCAAATAGTGATTCTGTGATATTACATCCTAAGGCCA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAGCCCATCAAATAGTGATTCTGTGATATTACATCCTAAGGCCA  795

seq1  CTAATACAGATGTGTGTTCAATGTGGCATTCACAGATAAGCACCTGCATG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACAGATGTGTGTTCAATGTGGCATTCACAGATAAGCACCTGCATG  845

seq1  TTCAATGGTGATTTCCTAGAATACCAACCAACAATGGCATTCGTCTTCAT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGTGATTTCCTAGAATACCAACCAACAATGGCATTCGTCTTCAT  895

seq1  CTATTGTTTTTAGATATTCACCAAGAAAAGCACTTTAGAGAAGCGATAGG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTTTTAGATATTCACCAAGAAAAGCACTTTAGAGAAGCGATAGG  945

seq1  TTCAGCAACACAAACCTTACAAGATTATTCATGCTCACCTTTTAACTGAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAACACAAACCTTACAAGATTATTCATGCTCACCTTTTAACTGAA  995

seq1  AGAAAGTAGTCACAGAAATCTCCACTGTGGTGAGGGCCTATCAAAGGGAC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAGTCACAGAAATCTCCACTGTGGTGAGGGCCTATCAAAGGGAC  1045

seq1  ACATAATGTGGCTGAGTATCTACCCTCAAACTGGCGCAAGAAATCATAGG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGTGGCTGAGTATCTACCCTCAAACTGGCGCAAGAAATCATAGG  1095

seq1  AAGGAGACCGTCTTCCAGTGCTGAAGAATTC  1114
      |||||||||||||||||||||||||||||||
seq2  AAGGAGACCGTCTTCCAGTGCTGAAGAATTC  1126


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