BAC Information

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BAC

Clone NameB6Ng01-211D11
Chromosome3 (Build37)
Map Location 81,702,650 - 81,850,086
singlet/doubletdoublet
Overlap geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3
Upstream geneGlrb, EG626841, Pdgfc, LOC229443
Downstream geneGucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211D11.bB6Ng01-211D11.g
ACCGA029347GA029348
length1,1721,136
definitionB6Ng01-211D11.b B6Ng01-211D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,848,907 - 81,850,086)(81,702,650 - 81,703,774)
sequence
gaattctcttctctttcctaaaacgtaccaagaacatttttatcatgtca
accaaaagtctttgtgttctttcttgattttgctttttaatcaagttgtg
ctggtgaacttagccaagccagctcaggtcttttcctgatgctattgata
acactctttgctatttctgagtggcagttttaaggtgtcaatacagagag
catgcaatgaaaaaaaatgctatttttctgtctctgacctctgtagtttc
tcctagccaggtactttgtttttgcttatcatgtttagtctcaaccatag
tttcgttgtacaaacatccctgttcaggagtcctaccccaggaggacaac
acggtatattcttcctagtccactcaaaaggccatgtgtgctaatgagaa
atttataccagattataaatagtaattatgtattagtaattatggggaat
gttcataagcagtcccttacattcagatattataaagaagctaaaatacc
agcagttaaccacatttcctcccattgacatctaggtgattcagcaaaga
aatgaagaatgtgatcacacccagtttttaattgaagaaaaggaatcaaa
agaagaggatttttatgaagatctggataggtttgaagagaatggtaccc
aggaatcacgtatcagcccttacaccttctgcaaagcatttccttttcac
atcatatttgaccggaacctagtggtcactcagtgtggcaatgccatcta
cagagtgctcccccaggtaaaatgcacagctctaccaccttgggatctca
cacacacacacacacacacacacacacacacacacacacacacatgcaca
cacacacacacacaccattacaggttccattcgttagcggaccgatccca
cgcacttataacctaaatgtgtttgaaaatactgaaaacttccttagggc
ttttatttgtgtctactttaatcacttacaggaaaaggagggagttgtat
gagatcggtagacttgctttgtgaagaaaaattgagaaattgctaagaag
cagtcagcttccactccgttgcttataaataaatatcactgcctagctac
cttcccaaaaaatagcttcaaaccagctgttggacaagggagaggtattt
acaacagcagatggaaaacata
gaattctcataaactgtctgatcatcacttcttaatctgggagctgaatg
caaagaccttgtaacatagaggggcaagctcttcattcaagcacacgatc
ctaagaactggccactaacataaatttgtctctataaacttagcagtgtc
aaagaaccatgtccttaggtgtcccttgaatatggtagagcttcagttga
ttggcatgtagattggagatggtaatttgacctgtctcaaagggctatgc
gacatgtacaatggaacatgccaagcatttacaagtgtaaatagcttatt
acgtgtgttaaccattggtgctattttaccatagtccaataaaatggaat
caattttttaaaatcaccaatcaattttaattaatcgtgcagtaacagga
gtaagtacagtgtcctcaggattaagaaatcctggcccatttcttcctgt
ggttcagcacaagtaaattttgaaaatgaagtagaaatatgacgctcacc
gtcaattttttccagcacccataaatcattttgatttagcatcggatgag
ggctaatttatgatggtttaagtttaattttcagagagtgctagggtatt
tgtttatataagataaagggcatttactgcatgtgtttgagtatgccttc
aatggctagttttccatgacatttagttattctgagtctgcaaaatatgc
aaagctcctaaatcctttctccacattgactggaagtgttctgattgttt
agcatataaatgttcatttcttccatggggtgtatgttgatgcaaaatga
aatgaggctgttctttctgctctggtaaacattgagtttattgtccctct
acacttgggacattcctttccttctgccccatgttccaatttcttcctgg
gcagatccatcatttgaaatggtatcatgtgcatttcaaacactttagag
tttacagagaatctctcactcttccttgaatcagtaattccggagctcat
actctagctggtcaaccataattcttattctaattttatctggtggctct
tttttcttggcttactctggaccggcctttcatcatcctaatcctaatat
taaaacactggctcttatggaaagagtctgttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81848907_81850086
seq2: B6Ng01-211D11.b_47_1218 (reverse)

seq1  TATGTTTTTCATCTTGCTTGTTTGTAAATTTCCTTCTTCCCCTTGT-CAA  49
      |||||||| |||| ||||   |||||||  | | |||  ||||||| |||
seq2  TATGTTTTCCATC-TGCT--GTTGTAAA--TACCTCT--CCCTTGTCCAA  43

seq1  CAGCTGGTTTTGAAAGCTATTTTT--GGAAGGTAGCTAGGCAGTGAATAT  97
      ||||||||||   |||||||||||  ||||||||||||||||||| ||||
seq2  CAGCTGGTTT--GAAGCTATTTTTTGGGAAGGTAGCTAGGCAGTG-ATAT  90

seq1  TTATTTAATAAACAAACCGGAGTGAAAGCTGACTGC-TCTTAGCAATTTC  146
      |||||| |||| |||  ||||||| ||||||||||| |||||||||||||
seq2  TTATTT-ATAAGCAA--CGGAGTGGAAGCTGACTGCTTCTTAGCAATTTC  137

seq1  CCAATTTT--CTCACAAAGCAAGTCTACCGATCTCATACAACTCCCTCCT  194
       |||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTCTTCACAAAGCAAGTCTACCGATCTCATACAACTCCCTCCT  187

seq1  TTCCCTGTAAGTGATTAAAGTAGACACAAATAAAAGCCCTAAGGAAGTTT  244
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTAAGTGATTAAAGTAGACACAAATAAAAGCCCTAAGGAAGTTT  237

seq1  TCAGTATTTTCAAACACATTTAGGTTATAAGTGCGTGGGATCGGTCCTGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAGTATTTTCAAACACATTTAGGTTATAAGTGCGTGGGATCGGTCC-GC  286

seq1  TAACGAATGGAACCTGTAATGGTGTGTGTGTGTGTGTGTGCATGTGTGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGAATGGAACCTGTAATGGTGTGTGTGTGTGTGTGTGCATGTGTGTG  336

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGATCCCAAGGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGATCCCAAGGT  386

seq1  GGTAGAGCTGTGCATTTTACCTGGGGGAGCACTCTGTAGATGGCATTGCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGCTGTGCATTTTACCTGGGGGAGCACTCTGTAGATGGCATTGCC  436

seq1  ACACTGAGTGACCACTAGGTTCCGGTCAAATATGATGTGAAAAGGAAATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGTGACCACTAGGTTCCGGTCAAATATGATGTGAAAAGGAAATG  486

seq1  CTTTGCAGAAGGTGTAAGGGCTGATACGTGATTCCTGGGTACCATTCTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGAAGGTGTAAGGGCTGATACGTGATTCCTGGGTACCATTCTCT  536

seq1  TCAAACCTATCCAGATCTTCATAAAAATCCTCTTCTTTTGATTCCTTTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTATCCAGATCTTCATAAAAATCCTCTTCTTTTGATTCCTTTTC  586

seq1  TTCAATTAAAAACTGGGTGTGATCACATTCTTCATTTCTTTGCTGAATCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAAAAACTGGGTGTGATCACATTCTTCATTTCTTTGCTGAATCA  636

seq1  CCTAGATGTCAATGGGAGGAAATGTGGTTAACTGCTGGTATTTTAGCTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGTCAATGGGAGGAAATGTGGTTAACTGCTGGTATTTTAGCTTC  686

seq1  TTTATAATATCTGAATGTAAGGGACTGCTTATGAACATTCCCCATAATTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATATCTGAATGTAAGGGACTGCTTATGAACATTCCCCATAATTA  736

seq1  CTAATACATAATTACTATTTATAATCTGGTATAAATTTCTCATTAGCACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACATAATTACTATTTATAATCTGGTATAAATTTCTCATTAGCACA  786

seq1  CATGGCCTTTTGAGTGGACTAGGAAGAATATACCGTGTTGTCCTCCTGGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTTTTGAGTGGACTAGGAAGAATATACCGTGTTGTCCTCCTGGG  836

seq1  GTAGGACTCCTGAACAGGGATGTTTGTACAACGAAACTATGGTTGAGACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACTCCTGAACAGGGATGTTTGTACAACGAAACTATGGTTGAGACT  886

seq1  AAACATGATAAGCAAAAACAAAGTACCTGGCTAGGAGAAACTACAGAGGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGATAAGCAAAAACAAAGTACCTGGCTAGGAGAAACTACAGAGGT  936

seq1  CAGAGACAGAAAAATAGCATTTTTTTTCATTGCATGCTCTCTGTATTGAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGAAAAATAGCATTTTTTTTCATTGCATGCTCTCTGTATTGAC  986

seq1  ACCTTAAAACTGCCACTCAGAAATAGCAAAGAGTGTTATCAATAGCATCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAAACTGCCACTCAGAAATAGCAAAGAGTGTTATCAATAGCATCA  1036

seq1  GGAAAAGACCTGAGCTGGCTTGGCTAAGTTCACCAGCACAACTTGATTAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGACCTGAGCTGGCTTGGCTAAGTTCACCAGCACAACTTGATTAA  1086

seq1  AAAGCAAAATCAAGAAAGAACACAAAGACTTTTGGTTGACATGATAAAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAATCAAGAAAGAACACAAAGACTTTTGGTTGACATGATAAAAA  1136

seq1  TGTTCTTGGTACGTTTTAGGAAAGAGAAGAGAATTC  1180
      ||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGGTACGTTTTAGGAAAGAGAAGAGAATTC  1172

seq1: chr3_81702650_81703774
seq2: B6Ng01-211D11.g_62_1197

seq1  GAATTCTCATAAACTGTCTGATCATCACTTCTTAATCTGGGAGCTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAAACTGTCTGATCATCACTTCTTAATCTGGGAGCTGAATG  50

seq1  CAAAGACCTTGTAACATAGAGGGGCAAGCTCTTCATTCAAGCACACGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCTTGTAACATAGAGGGGCAAGCTCTTCATTCAAGCACACGATC  100

seq1  CTAAGAACTGGCCACTAACATAAATTTGTCTCTATAAACTTAGCAGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACTGGCCACTAACATAAATTTGTCTCTATAAACTTAGCAGTGTC  150

seq1  AAAGAACCATGTCCTTAGGTGTCCCTTGAATATGGTAGAGCTTCAGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCATGTCCTTAGGTGTCCCTTGAATATGGTAGAGCTTCAGTTGA  200

seq1  TTGGCATGTAGATTGGAGATGGTAATTTGACCTGTCTCAAAGGGCTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGTAGATTGGAGATGGTAATTTGACCTGTCTCAAAGGGCTATGC  250

seq1  GACATGTACAATGGAACATGCCAAGCATTTACAAGTGTAAATAGCTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTACAATGGAACATGCCAAGCATTTACAAGTGTAAATAGCTTATT  300

seq1  ACGTGTGTTAACCATTGGTGCTATTTTACCATAGTCCAATAAAATGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGTTAACCATTGGTGCTATTTTACCATAGTCCAATAAAATGGAAT  350

seq1  CAATTTTTTAAAATCACCAATCAATTTTAATTAATCGTGCAGTAACAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTAAAATCACCAATCAATTTTAATTAATCGTGCAGTAACAGGA  400

seq1  GTAAGTACAGTGTCCTCAGGATTAAGAAATCCTGGCCCATTTCTTCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTACAGTGTCCTCAGGATTAAGAAATCCTGGCCCATTTCTTCCTGT  450

seq1  GGTTCAGCACAAGTAAATTTTGAAAATGAAGTAGAAATATGACGCTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGCACAAGTAAATTTTGAAAATGAAGTAGAAATATGACGCTCACC  500

seq1  GTCAATTTTTTCCAGCACCCATAAATCATTTTGATTTAGCATCGGATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTTTTCCAGCACCCATAAATCATTTTGATTTAGCATCGGATGAG  550

seq1  GGCTAATTTATGATGGTTTAAGTTTAATTTTCAGAGAGTGCTAGGGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTTATGATGGTTTAAGTTTAATTTTCAGAGAGTGCTAGGGTATT  600

seq1  TGTTTATATAAGATAAAGGGCATTTACTGCATGTGTTTGAGTATGCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATAAGATAAAGGGCATTTACTGCATGTGTTTGAGTATGCCTTC  650

seq1  AATGGCTAGTTTTCCATGACATTTAGTTATTCTGAGTCTGCAAAATATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTAGTTTTCCATGACATTTAGTTATTCTGAGTCTGCAAAATATGC  700

seq1  AAAGCTCCTAAATCCTTTCTCCACATTGACTGGAAGTGTTCTGATTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCCTAAATCCTTTCTCCACATTGACTGGAAGTGTTCTGATTGTTT  750

seq1  AGCATATAAATGTTCATTTCTTCCATGGGGTGTATGTTGATGCAAAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATAAATGTTCATTTCTTCCATGGGGTGTATGTTGATGCAAAATGA  800

seq1  AATGAGGCTGTTCTTTCTGCTCTGGTAAACATTGAGTTTATTGTCCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGCTGTTCTTTCTGCTCTGGTAAACATTGAGTTTATTGTCCCTCT  850

seq1  ACACTTGGGACATTCCTTTCCTTCTGCCCCATGTTCCAATTTCTTCCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGGGACATTCCTTTCCTTCTGCCCCATGTTCCAATTTCTTCCTGG  900

seq1  GCAGATCCATCATTTGAAATGGTATCATGTGCATTTCAAACACTTTAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCATCATTTGAAATGGTATCATGTGCATTTCAAACACTTTAGAG  950

seq1  TTTACAGAGAATCTCTCACTCTTCCTTGAATCAGTAATTCCGGAGCTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAGAATCTCTCACTCTTCCTTGAATCAGTAATTCCGGAGCTCAT  1000

seq1  ACTCTAGCTTGTC-ACCATAATTCTTA-TCTAATTTTATCTGGTGGCTCT  1048
      ||||||||| ||| ||||||||||||| ||||||||||||||||||||||
seq2  ACTCTAGCTGGTCAACCATAATTCTTATTCTAATTTTATCTGGTGGCTCT  1050

seq1  TTTT--CTGGCTTACTCTGACCCGGCC-TTCATCATTCTAATCCT-ATA-  1093
      ||||   ||||||||||||  |||||| |||||||| |||||||| ||| 
seq2  TTTTTCTTGGCTTACTCTGGACCGGCCTTTCATCATCCTAATCCTAATAT  1100

seq1  TAAAACACTGGCTCCTATG---AGAGTCTG-TCTCT  1125
      |||||||||||||| ||||   |||||||| |||||
seq2  TAAAACACTGGCTCTTATGGAAAGAGTCTGTTCTCT  1136