BAC Information

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BAC

Clone NameB6Ng01-211F01
Chromosome3 (Build37)
Map Location 26,643,174 - 26,643,691
singlet/doubletsinglet
Overlap geneSpata16
Upstream geneNlgn1, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211F01.bB6Ng01-211F01.g
ACCGA029415GA029416
length1,1771,181
definitionB6Ng01-211F01.b B6Ng01-211F01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaataagaatgttgcctattcagtgacattcagaattgcctctag
tattgtaagagagatagtgaaagaaatcaggcattactgtctactacata
gagttagaaatctcagggcaagcttagcaaagtaagtttagaattctttt
tttgttttgttttttgttgttgtttgttttgttttttttgagacagggtt
tctctgtatagtcctgcctggcctcggactcagaaatccacttgcctctg
cctcccaagtgctgggatgaaaggtgtccgccaccatgcccagcttagaa
ttcttattatagttatgtatcccagactacattacttattaatagaaagt
ctccctcccccccacacacaatcactcccatatacaggaatttacaatgg
tttaggaagtagattgggctgtggtttaaggagggactaactagagtatt
gcattattcatgagaaggttagctagagcagaactccctaattagaacca
tggctttggcgtgaaagcccttgcccagggagtgtaaagatctcacacct
gacttctaagactatagctgaccttagatagagctgactttgtctcagta
acctcatatcctggctgatgtgtcacctcatttccctattttcttctgta
ttaaaactctgatgttcgctttgagaaaattacattcagacacatgatct
ctctgtgtccatgtctctttgtcatccacgccaactccttgctcccctgt
aacctgaaccccgagttttcctggggatcaaggacctgattgagatccat
ctgcattaccagccatgccccaatgataagaaaacccatctgtattataa
ttagaatcatgggtacaatttttaccatattcaagataaaaatgaaacaa
aagaatttttgagaggaagaaaatggacggtagtgtcagagaagtacctg
atgtctcctctgtacttaagaaagccccccctggagtgtttggaaggacg
catttaggatctctcccagttttcactgagattagtgaaaggactaattt
ggtcatgtaagtgcatcattcacaatgtggtaatggatcaattgatgctt
gcctcttttatggccaacactattatgctctaatgtaagtcaactgtagt
tccagaaacctgtcataattgtttctc

gaattcttcatctgcttcagagctactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaattgatcttttttcttt
tcttttttcttttccttccttctaatctctccccaggtattcttacctga
cctaaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgaaccatattttctctttgctcctattctctctccccgctttact
tctgatagattgtcctgaacttcatccagaattttcagccctatcttaat
cacctgataacatgtgaaaaagaacaaaagggctcctaacactagaaaaa
attcaaggccaaacataccttgtaaagctattttccactttacttctgat
agactgtcttgactttccttagaaagttcaagaccagacttaccttgtaa
agctgtactcactggtactcctgttccccagctgaaaagttctgaattca
tgcagttgaatccttctcaacagtctgttttacgggaacctttattaccg
tgacccgcagttctggttctggaatgagggatcttccttgcgccggtccc
gagttttcttgtattttttcgtcccggatttcagcaccaactcttatacg
cgttctcacgactggccaggaaagacacaacaagccagaatcttctgcgg
caaaactttattgcttacatcttcaggagcaggagcgcaaaaccccaagc
cccaaaaacgaaagcccccttctaaacgaaagcgaaaccccccgtcccta
tttaggagagttatccttcgcttaggacgcatcactccctgattggctgc
agcccatggccgagctgacgtcacgggaaaggcagagtacaagtagtggt
aaaatacccttgggcacatgcgcagattatttgtttaccacttagaaaca
cagatgtcagcgccatcttgtgacggcgaatgtgggggcggctcccaaca
gttaagtctgtgtcaagagataagtaaattaagtctgatgtaaatgaaat
aagggaagtggtgactcaggcagttctcacccagctatcctccactttta
cattaagaattaattaacttaggccagggtgcttgcacacctctaatccc
aggcacctcctgcaagaaaaagtgcgcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26643174_26643691
seq2: B6Ng01-211F01.b_717_1221 (reverse)

seq1  GAGAAACAATTATGACA-GTTTCTTGGACTACAAGGTTGAC-TACATTAG  48
      ||||||||||||||||| |||||| | ||||||  |||||| ||||||||
seq2  GAGAAACAATTATGACAGGTTTCTGGAACTACA--GTTGACTTACATTAG  48

seq1  GAAACATAATAGTTGTTGGGCAATAAAAAGAGCAAGCATTCAATGGATCC  98
        | |||||||| |||| ||| ||||||   ||||||| ||||| |||||
seq2  --AGCATAATAG-TGTT-GGCCATAAAAGAGGCAAGCA-TCAATTGATCC  93

seq1  ATTTTACCACAATTGTGAATGATGCACTTTTACATGACCAAAATTAGTCC  148
      |  ||||||| ||||||||||||||||  |||||||||| ||||||||||
seq2  A--TTACCAC-ATTGTGAATGATGCAC--TTACATGACC-AAATTAGTCC  137

seq1  TTTCACTTAATCTCAGTGAAAAACTGGGAAGAGATCCTAAATGCGTCCTT  198
      |||||| ||||||||||| ||||||||| |||||||||||||||||||||
seq2  TTTCAC-TAATCTCAGTG-AAAACTGGG-AGAGATCCTAAATGCGTCCTT  184

seq1  CCAAACACTCCAGGGGGGGCTTTCTTAAGTACAGAGGAGACATCAGGTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACTCCAGGGGGGGCTTTCTTAAGTACAGAGGAGACATCAGGTAC  234

seq1  TTCTCTGACACTACCGTCCATTTTTCTTCCTCTCAAAAATTCTTTTGTTT  298
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTCTGACACTACCGTCCA-TTTTCTTCCTCTCAAAAATTCTTTTGTTT  283

seq1  CA-TTTTATCTTGAATATGGTAAAAATTGTA-CCATGATTCTAATTATAA  346
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATTTTTATCTTGAATATGGTAAAAATTGTACCCATGATTCTAATTATAA  333

seq1  TACAGATGGGTTTTCTTATCATTGGGGCATGGCTGGTAATGCAGATGGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGGTTTTCTTATCATTGGGGCATGGCTGGTAATGCAGATGGAT  383

seq1  CTCAATCAGGTCCTTGATCCCCAGGAAAACTCGGGGTTCAGGTTACAGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCAGGTCCTTGATCCCCAGGAAAACTCGGGGTTCAGGTTACAGGG  433

seq1  GAGCAAGGAGTTGGCGTGGATGACAAAGAGACATGGACACAGAGAGATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGGAGTTGGCGTGGATGACAAAGAGACATGGACACAGAGAGATCA  483

seq1  TGTGTCTGAATGTAATTTTCTC  518
      ||||||||||||||||||||||
seq2  TGTGTCTGAATGTAATTTTCTC  505


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