BAC Information

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BAC

Clone NameB6Ng01-213J06
Chromosome3 (Build37)
Map Location 144,966,086 - 145,061,329
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213J06.bB6Ng01-213J06.g
ACCGA031060GA031061
length1,140977
definitionB6Ng01-213J06.b B6Ng01-213J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,966,086 - 144,966,976)(145,060,616 - 145,061,329)
sequence
gaattctttgttcagctctgagccccactttttaatggggttgtttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgacttgggataggtaaagatcctttcccaatctgttggtggtct
ttatgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatctttaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgatacac
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctgataggagtaattcttggt
agttgacctatgacctctacattctcctcccatggtctttataatcactg
ggtcctgatgttttgaagtttataatagtgtgccatgagagtcgctttta
ttctgttgggtactcagtgagcctttccaaggtggaagtgtcactcactt
tctggaaatttctcttcattattccttttattctgcaatttctgctgcat
ttggatctccacaatcaaactatttagtttcttgcttttaaggactaatt
tgccgtctttccttggggttagatgagaatctttcctaaataactcatgt
caacattttgatatttgtttatgtaaatgttattacatcctcactcagat
atacatatacatcatatacatatacatatacatatacatatataccaaaa
accatggttccttggatgcacatcccactctaatctcaactaagggtgag
aattaatattttacatttttctccttggtgttgttttttttttcttccaa
gttttttggtcttggttgaagatatccttttgaagagtctccagttgttt
tctgttatcaattaaaaacttaagaacagtaagacagaatttgggaaact
tattcttcataagcctgaactgggaatgcctcccatgtca
gaattcatcagggacaagccatacaacatctttctatagctcttcctctt
caagtaagaaatggaaaatggctgcttagcttcagggtgcatccttgcga
gaatgtgacatgaatattatcactcaggaaactatagcactcaggctagt
aaaacaacttttaacgggctttccctgtttttgaaaggaaaagatgcatt
agggaatggaaatgaaaatattctattttatgttaggctaacacatcgat
gcgtttatgacatattcactttaatttccctcaaggaaacatttgtttct
actcttgaccttgcggtttgaggttaaacatctccaaccctgaatataat
ggtagatgtgaaacagagactgaatttcgtcaacttgttcaatatctgta
gggatagtgattggtttagcagtgagcaaaggacagacttccctccccca
atttccaacttgagtggaactatggagtaagcagaagtgccagtaaaaat
gctcagataaagtaaaagacaccgcgtgtcgcttggaacattaatgtcgt
taaaatgcccagggtacagaccgagaccagcacattcaactgtaaaactc
cagagttgtctgctgtagaaatgtgaaaaaggcctaaaactcatgcagac
ccacaaaggatcccaaaagtacaaagtcttgccaagaaacatgaagctgg
agttgtcatgcttgctggccttaaaacatatcacacgccaggcgtggtgg
cgcacacctttgaatcccagcacttgagaggcagaggcaggtggatttct
tgagttcgaggccagcctggtctacagagtgagttctaggacaatcaggg
ctatacagagaaaccctgtcttgaagaaaaaaaaaaaacatatcacacaa
gatgctgaaatcaccaaactggtaaactgccacaagaacatgcaatgtta
agccaatagaataggaaatcaaataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144966086_144966976
seq2: B6Ng01-213J06.b_274_1181

seq1  GCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATC  50

seq1  TTTAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT  100

seq1  TTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGAT  150

seq1  AAGTATGGATCGATACACATTCTTCTACACGATAACAACCAGTTGTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGATCGATACACATTCTTCTACACGATAACAACCAGTTGTGCCA  200

seq1  GCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTG  250

seq1  ATAGGAGTAATTCTTGGTAGTTGACCTATGACCTCTACATTCTCCTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGTAATTCTTGGTAGTTGACCTATGACCTCTACATTCTCCTCCCA  300

seq1  TGGTCTTTATAATCACTGGGTCCTGATGTTTTGAAGTTTATAATAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTATAATCACTGGGTCCTGATGTTTTGAAGTTTATAATAGTGTG  350

seq1  CCATGAGAGTCGCTTTTATTCTGTTGGGTACTCAGTGAGCCTTTCCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGAGTCGCTTTTATTCTGTTGGGTACTCAGTGAGCCTTTCCAAGG  400

seq1  TGGAAGTGTCACTCACTTTCTGGAAATTTCTCTTCATTATTCCTTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGTCACTCACTTTCTGGAAATTTCTCTTCATTATTCCTTTTATT  450

seq1  CTGCAATTTCTGCTGCATTTGGATCTCCACAATCAAACTATTTAGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATTTCTGCTGCATTTGGATCTCCACAATCAAACTATTTAGTTTCT  500

seq1  TGCTTTTAAGGACTAATTTGCCGTCTTTCCTTGGGGTTAGATGAGAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAAGGACTAATTTGCCGTCTTTCCTTGGGGTTAGATGAGAATCT  550

seq1  TTCCTAAATAACTCATGTCAACATTTTGATATTTGTTTATGTAAATGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAATAACTCATGTCAACATTTTGATATTTGTTTATGTAAATGTTA  600

seq1  TTACATCCTCACTCAGATATACATATACATCATATACATATACATATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCTCACTCAGATATACATATACATCATATACATATACATATACA  650

seq1  TATACATATATACCAAAAACCATGGTTCCTTGGATGCACATCCCACTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATATACCAAAAACCATGGTTCCTTGGATGCACATCCCACTCTA  700

seq1  ATCTC-ACTAAGGGTGAGAA-TAATATTTTACATTTTTCTCCTT-GTGTT  747
      ||||| |||||||||||||| ||||||||||||||||||||||| |||||
seq2  ATCTCAACTAAGGGTGAGAATTAATATTTTACATTTTTCTCCTTGGTGTT  750

seq1  G-TTTTTTTTTCTTCCAAG-TTTTTGGTCTTGGTTGAGGATATCCTTT--  793
      | ||||||||||||||||| ||||||||||||||||| ||||||||||  
seq2  GTTTTTTTTTTCTTCCAAGTTTTTTGGTCTTGGTTGAAGATATCCTTTTG  800

seq1  GAGAGTCTCCAGTTG-TTTCTGTTATCAATTAAAA--CTAAG-ACAGTAA  839
       |||||||||||||| |||||||||||||||||||   |||| |||||||
seq2  AAGAGTCTCCAGTTGTTTTCTGTTATCAATTAAAAACTTAAGAACAGTAA  850

seq1  GACAGA--TTTGGAAACT--ATCTTCATAAAGGCTTGACTGGG-ATGC--  882
      ||||||  || |||||||   ||||||| ||| ||  |||||| ||||  
seq2  GACAGAATTTGGGAAACTTATTCTTCAT-AAGCCTGAACTGGGAATGCCT  899

seq1  CCCATGTCA  891
      |||||||||
seq2  CCCATGTCA  908

seq1: chr3_145060616_145061329
seq2: B6Ng01-213J06.g_67_780 (reverse)

seq1  CAAGCATGACAACTCCAGCTTCATGTTTCTTGGCAAGACTTTGTACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGACAACTCCAGCTTCATGTTTCTTGGCAAGACTTTGTACTTTT  50

seq1  GGGATCCTTTGTGGGTCTGCATGAGTTTTAGGCCTTTTTCACATTTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCTTTGTGGGTCTGCATGAGTTTTAGGCCTTTTTCACATTTCTAC  100

seq1  AGCAGACAACTCTGGAGTTTTACAGTTGAATGTGCTGGTCTCGGTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAACTCTGGAGTTTTACAGTTGAATGTGCTGGTCTCGGTCTGTA  150

seq1  CCCTGGGCATTTTAACGACATTAATGTTCCAAGCGACACGCGGTGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCATTTTAACGACATTAATGTTCCAAGCGACACGCGGTGTCTTT  200

seq1  TACTTTATCTGAGCATTTTTACTGGCACTTCTGCTTACTCCATAGTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATCTGAGCATTTTTACTGGCACTTCTGCTTACTCCATAGTTCCA  250

seq1  CTCAAGTTGGAAATTGGGGGAGGGAAGTCTGTCCTTTGCTCACTGCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTGGAAATTGGGGGAGGGAAGTCTGTCCTTTGCTCACTGCTAAA  300

seq1  CCAATCACTATCCCTACAGATATTGAACAAGTTGACGAAATTCAGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACTATCCCTACAGATATTGAACAAGTTGACGAAATTCAGTCTCT  350

seq1  GTTTCACATCTACCATTATATTCAGGGTTGGAGATGTTTAACCTCAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACATCTACCATTATATTCAGGGTTGGAGATGTTTAACCTCAAACC  400

seq1  GCAAGGTCAAGAGTAGAAACAAATGTTTCCTTGAGGGAAATTAAAGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCAAGAGTAGAAACAAATGTTTCCTTGAGGGAAATTAAAGTGAA  450

seq1  TATGTCATAAACGCATCGATGTGTTAGCCTAACATAAAATAGAATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATAAACGCATCGATGTGTTAGCCTAACATAAAATAGAATATTTT  500

seq1  CATTTCCATTCCCTAATGCATCTTTTCCTTTCAAAAACAGGGAAAGCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATTCCCTAATGCATCTTTTCCTTTCAAAAACAGGGAAAGCCCG  550

seq1  TTAAAAGTTGTTTTACTAGCCTGAGTGCTATAGTTTCCTGAGTGATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTGTTTTACTAGCCTGAGTGCTATAGTTTCCTGAGTGATAATA  600

seq1  TTCATGTCACATTCTCGCAAGGATGCACCCTGAAGCTAAGCAGCCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCACATTCTCGCAAGGATGCACCCTGAAGCTAAGCAGCCATTTT  650

seq1  CCATTTCTTACTTGAAGAGGAAGAGCTATAGAAAGATGTTGTATGGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTACTTGAAGAGGAAGAGCTATAGAAAGATGTTGTATGGCTTG  700

seq1  TCCCTGATGAATTC  714
      ||||||||||||||
seq2  TCCCTGATGAATTC  714