BAC Information

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BAC

Clone NameB6Ng01-218F13
Chromosome3 (Build37)
Map Location 53,154,861 - 53,306,668
singlet/doubletdoublet
Overlap geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
Downstream geneFrem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218F13.bB6Ng01-218F13.g
ACCGA034501GA034502
length1,019412
definitionB6Ng01-218F13.b B6Ng01-218F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,306,036 - 53,306,668)(53,154,861 - 53,155,277)
sequence
gaattcttacatcccacaggcataaagtcctactgtcttctccttccaaa
cagaaatagaatttgtatcctgttgtctacttggtatgcagttctcatta
aaagaagaagcaatgcttcttagcaaacatagagggcaccagagaccatg
ttctagtctcaagcaaagcaaattctttcactttacagaggttctgcatc
aggcattctgaaccatgtgcctgtgcgcctgtggtctgtgcctgtgcgtg
tgcctgtgcctgtgcctgtgcctgtgcgtgtgcctgtgcctgtgcctgtg
cacctgtgcctgtgcctgtgcctgtgcacctgtgcctgtgcctgtgcctg
tgcctgtgtctgtgcctgtgcacctgtgcctgtgcctgtgcctgtgcctg
tgcctgtgcctgtgcctgtgcacctgtgcctgtgcctgtgtctgtgcctg
tgtctgtgcctgtgcctgtgcctgtgcctgtgcctgtgtctgtgcctgtg
cctgtgcacctgtgcctgtgcctgtgcctgtgcctgtgcctgtgcctgtg
cctgtgcacctgtgcctgtgcctgtgcctgtgcctgtgcctgtgtctgtg
cctgtgcacctgtgcctgtgcctgtgcctgtgtctgtctgtgtctgtctg
tgtgtgtctgtgtctgtctgtatctgtgtctgtgcctgtgtctgtgcctg
tgcctgtctgtgcttgtgcctgtgcctgtgcctgtgcctgtgcctgtgcc
tgtgcctgtgtctgtctgtgcctgtgcacctgtgcacctgtgcctgtgcc
tgtgcctgtgcctgtctgtgtctgtgcctgtgtctgtctgtgtctgtctg
tgtgtgtctgtgtctgtgtctgtctgtatctgtgtctgtgcctgtgcctg
tgtctgtgcctgtgcctgtctgtgcttgtgcctgtgcctgtgcctgtgcc
tgtgcctgtgcctgtgcctgtgcctgtgcctgtctgtgcctgtgcctgtg
cctgtgcctgtgcctgtgc
agttgataagaaagtgcaaggaagaaagcaaaaagaaaaaacagatagga
atgcatgaaacaatgtgacagaaagcccaaaataaatcagcaatagtgaa
gctttaagctgtcagtttgctaaaatattaacatttaatataaaatattc
atgatgtcacagtgacactgagaaaggaagaaggcatattattgacctcc
actgaagggtaacaagggctaagcattgacaatcaaacaagaaggaccct
gcctataggcctgttggatggctctgtggttaatagctccatgaaccctg
gcaacctgcatacaagccatggacccacatggtggaagttgagaagacta
tcctgggctacaatattactctgagggtaggctaggcaacttagcaagat
cttgttttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53306036_53306668
seq2: B6Ng01-218F13.b_46_678 (reverse)

seq1  ACACAGGCACAGGCACAGGCACAGGTGCACAGGCACAGACACAGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCACAGGCACAGGCACAGGTGCACAGGCACAGACACAGGCACAG  50

seq1  GCACAGGCACAGGCACAGGCACAGGTGCACAGGCACAGGCACAGGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCACAGGCACAGGCACAGGTGCACAGGCACAGGCACAGGCACAG  100

seq1  GCACAGGCACAGGCACAGGCACAGGTGCACAGGCACAGGCACAGACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCACAGGCACAGGCACAGGTGCACAGGCACAGGCACAGACACAG  150

seq1  GCACAGGCACAGGCACAGGCACAGGCACAGACACAGGCACAGACACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCACAGGCACAGGCACAGGCACAGACACAGGCACAGACACAGGC  200

seq1  ACAGGCACAGGTGCACAGGCACAGGCACAGGCACAGGCACAGGCACAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACAGGTGCACAGGCACAGGCACAGGCACAGGCACAGGCACAGGC  250

seq1  ACAGGCACAGGTGCACAGGCACAGACACAGGCACAGGCACAGGCACAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACAGGTGCACAGGCACAGACACAGGCACAGGCACAGGCACAGGC  300

seq1  ACAGGTGCACAGGCACAGGCACAGGCACAGGTGCACAGGCACAGGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCACAGGCACAGGCACAGGCACAGGTGCACAGGCACAGGCACAG  350

seq1  GCACACGCACAGGCACAGGCACAGGCACAGGCACACGCACAGGCACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGCACAGGCACAGGCACAGGCACAGGCACACGCACAGGCACAGAC  400

seq1  CACAGGCGCACAGGCACATGGTTCAGAATGCCTGATGCAGAACCTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCGCACAGGCACATGGTTCAGAATGCCTGATGCAGAACCTCTGTA  450

seq1  AAGTGAAAGAATTTGCTTTGCTTGAGACTAGAACATGGTCTCTGGTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAGAATTTGCTTTGCTTGAGACTAGAACATGGTCTCTGGTGCCC  500

seq1  TCTATGTTTGCTAAGAAGCATTGCTTCTTCTTTTAATGAGAACTGCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTTGCTAAGAAGCATTGCTTCTTCTTTTAATGAGAACTGCATAC  550

seq1  CAAGTAGACAACAGGATACAAATTCTATTTCTGTTTGGAAGGAGAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGACAACAGGATACAAATTCTATTTCTGTTTGGAAGGAGAAGACA  600

seq1  GTAGGACTTTATGCCTGTGGGATGTAAGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  GTAGGACTTTATGCCTGTGGGATGTAAGAATTC  633

seq1: chr3_53154861_53155277
seq2: B6Ng01-218F13.g_63_480

seq1  GAATTCAGTTGATAAGAAAGTGCAAGGAAGAAAGCAAAAAGAAAAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGATAAGAAAGTGCAAGGAAGAAAGCAAAAAGAAAAAACAG  50

seq1  ATAGGAATGCATGAAACAATGTGACAGAAAGCCCAAAATAAATCAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAATGCATGAAACAATGTGACAGAAAGCCCAAAATAAATCAGCAAT  100

seq1  AGTGAAGCTTTAAGCTGTCAGTTTGCTAAAATATTAACATTTAATATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGCTTTAAGCTGTCAGTTTGCTAAAATATTAACATTTAATATAAA  150

seq1  ATATTCATGATGTCACAGTGACACTGAGAAAGGAAGAAGGCATATTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATGATGTCACAGTGACACTGAGAAAGGAAGAAGGCATATTATTG  200

seq1  ACCTCCACTGAAGGGTAACAAGGGCTAAGCATTGACAATCAAACAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACTGAAGGGTAACAAGGGCTAAGCATTGACAATCAAACAAGAAG  250

seq1  GACCCTGCCTATAGGCCTGTTGGATGGCTCTGTGGTTAATAGCTCCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGCCTATAGGCCTGTTGGATGGCTCTGTGGTTAATAGCTCCATGA  300

seq1  ACCCTGGCAACCTGCATACAAGCCATGGACCCACATGGTGGAAGTTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCAACCTGCATACAAGCCATGGACCCACATGGTGGAAGTTGAGA  350

seq1  AGACTATCCTGGGCTACAAGATTAGTCTGAGGTTAGCCTAGGCAACTTAG  400
      ||||||||||||||||||| |||| ||||||| ||| |||||||||||||
seq2  AGACTATCCTGGGCTACAATATTACTCTGAGGGTAGGCTAGGCAACTTAG  400

seq1  CAAGATCTTG-TTTCAAA  417
      |||||||||| |||||||
seq2  CAAGATCTTGTTTTCAAA  418