BAC Information

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BAC

Clone NameB6Ng01-218H16
Chromosome3 (Build37)
Map Location 7,166,969 - 7,295,587
singlet/doubletdoublet
Overlap geneEG667801
Upstream geneEG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218H16.bB6Ng01-218H16.g
ACCGA034598GA034599
length1,1891,021
definitionB6Ng01-218H16.b B6Ng01-218H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,294,404 - 7,295,587)(7,166,969 - 7,168,000)
sequence
gaattcacataataattgccatgtgacaagtatatagttatcagcatact
caatggtaaaatcaaaaggatttcccctaaaggtatgagctcactcatag
catttatgcccaatattatactgcaaagactgcacagaaagattacttgc
taccaatattctactagaggcatcatttgtgtctttgggtcataactcaa
aaccctacagtacagaatcatttctcaggaatcaaatgaatcttttataa
tcatgaagagactattcatgctactaagatacatttaatatagaaactca
gtggctagtttttttaaagtaagttggctaagcctttaaaagcatttttg
aacaatcatagatatttagtatattatcggatcttaatagatcttaatta
tctttgcacagtgcatgtattcaagacttttccttaagttgatggcatca
ctgggatgacattgaattcaaagagggtgaagacagttggagtaagttct
accactactcagggcctctggggcaatctgtcctcggctttttggccagc
agcaaattaaaagcattgctatgctatatgctccttacggtaaagtcctc
catctccacacacccagagcaaaggaaccaagagaacatcgacttctgaa
accttcagctcaaatacatctttccctttagaactcaatttttaatcagc
aacagggttttcagtgatgggaaagtaatagatactaataagtaaataag
tgaatgaatgaatgaatgaatgaataaataaatgaataaataaataaata
aataaataaagttagaacaagctgggtccaaattaatcagagacgggtat
agaaggattgaactcaatatgaaaatgtgaacaatgtataggattccaag
tgagaagctgttgagtatcatgactgtaggctattgaaaccctacataaa
tcaatatgaacttgatggaaccggactaggcatcatgtccatttgggttt
aagatttcagaattcttagactacaaataagaatgatattgagacacatt
ttctgccttatagcctcagcttagctagtgtctgctcaatttccttttat
ctccaatcttaatttcctaaatttctgaaattaatatgttatttccagtc
tctacatatgattttattaactatttttgtgcaatttgt

gaattccaagctcgttggattcaaggattttctaggatgttggaacactg
gtggaggctcacctatgttaaaattcaatatttaaaggcacttataataa
aacaatactgaaagagagcatacatcatactaacgcaggggtagggtttg
agtatatggattatgagaatgccaagattccaggaggctgagtttccttg
aaactatgcctcatgactcctttcaggcctcttggcctgtaaagcagact
tccctggaatgggtgtagcaggtaggctcagtttttttggtcttgcttaa
agaactattactgtgagtttttgggttgaaggcagcaaaggaagatcaga
aagtgttcttaatctcttcagcaccttgttttaaagttttgttctttgtt
ttggactagtttttcattttcatttttgttttttatgttcttgttttgtt
ttgttttgttttggcaaggtctccatgtagctcaggttggtcttgaactc
actgtggtaccaaggataatcttgaactccagatcctactacctctacct
gccaaccactggtatgacaggtaccacaaggtccaacattttaaagtctt
tccataagtcatagggttactgaagatgttgagaatgcactatttcctag
ttctatatgctgggggaaatcggaattaatctgtgctctgttggtagtaa
taagaataatgtggtattgtatttactaatggtgtactgcagactcacta
gcattgagatgaaaaagtcaagttacctattgtctttttacaatggagag
ttgcttacaaaacagatctaaagggttcaatgttctcatccctagtccat
gtacctgtgtaatatcttttgccttttattaaaccagatatttttataca
tatttatgttatgatagtttccctgacaatatgcctctacttttctcttt
gcatctggagctgcccctttctatctcctatattttatctaagaaaccat
ttgctttacgctaatataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_7294404_7295587
seq2: B6Ng01-218H16.b_45_1233 (reverse)

seq1  ACAAAAATGCACAAATA-AGT--ATAAAATCATATGTAGAGAATGGAAAT  47
      || ||| |||||||| | |||  ||||||||||||||||||| |||||||
seq2  AC-AAATTGCACAAAAATAGTTAATAAAATCATATGTAGAGACTGGAAAT  49

seq1  -ACATA-TATATTCAGGAAATTA-GAAATTAAAGATGGAGAATAAAAGAA  94
       ||||| ||  ||||| || ||| ||||||||   ||||||  ||| |||
seq2  AACATATTAATTTCAGAAATTTAGGAAATTAAGATTGGAGATAAAAGGAA  99

seq1  AATGAGCAAGACACTAGCTAAGCTGA-GCTATAA-GCAGAAAATGTGTTC  142
      | ||||| |||||||||||||||||| ||||||| |||||||||||||  
seq2  ATTGAGC-AGACACTAGCTAAGCTGAGGCTATAAGGCAGAAAATGTGT--  146

seq1  CTC-ATATCATTC-TATTTGTAGTTCTAAGAATTCTGAAATCTTAAACCC  190
      ||| ||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  CTCAATATCATTCTTATTTGTAG-TCTAAGAATTCTGAAATCTTAAACCC  195

seq1  AAATGGACATGATGCCTAGTCCGGTTCCATCAAGTTCATATTGATTTATG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACATGATGCCTAGTCCGGTTCCATCAAGTTCATATTGATTTATG  245

seq1  TAGGGTTTCAATAGCCTACAGTCATGATACTCAACAGCTTCTCACTTGGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTCAATAGCCTACAGTCATGATACTCAACAGCTTCTCACTTGGA  295

seq1  ATCCTATACATTGTTCACATTTTCATATTGAGTTCAATCCTTCTATACCC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATACATTGTTCACATTTTCATATTGAGTTCAATCCTTCTATACCC  345

seq1  GTCTCTGATTAATTTGGACCCAGCTTGTTCTAACTTTATTTATTTATTTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGATTAATTTGGACCCAGCTTGTTCTAACTTTATTTATTTATTTA  395

seq1  TTTATTTATTCATTTATTTATTCATTCATTCATTCATTCATTCACTTATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTCATTTATTTATTCATTCATTCATTCATTCATTCACTTATT  445

seq1  TACTTATTAGTATCTATTACTTTCCCATCACTGAAAACCCTGTTGCTGAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTAGTATCTATTACTTTCCCATCACTGAAAACCCTGTTGCTGAT  495

seq1  TAAAAATTGAGTTCTAAAGGGAAAGATGTATTTGAGCTGAAGGTTTCAGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTGAGTTCTAAAGGGAAAGATGTATTTGAGCTGAAGGTTTCAGA  545

seq1  AGTCGATGTTCTCTTGGTTCCTTTGCTCTGGGTGTGTGGAGATGGAGGAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGATGTTCTCTTGGTTCCTTTGCTCTGGGTGTGTGGAGATGGAGGAC  595

seq1  TTTACCGTAAGGAGCATATAGCATAGCAATGCTTTTAATTTGCTGCTGGC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCGTAAGGAGCATATAGCATAGCAATGCTTTTAATTTGCTGCTGGC  645

seq1  CAAAAAGCCGAGGACAGATTGCCCCAGAGGCCCTGAGTAGTGGTAGAACT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGCCGAGGACAGATTGCCCCAGAGGCCCTGAGTAGTGGTAGAACT  695

seq1  TACTCCAACTGTCTTCACCCTCTTTGAATTCAATGTCATCCCAGTGATGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCAACTGTCTTCACCCTCTTTGAATTCAATGTCATCCCAGTGATGC  745

seq1  CATCAACTTAAGGAAAAGTCTTGAATACATGCACTGTGCAAAGATAATTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTTAAGGAAAAGTCTTGAATACATGCACTGTGCAAAGATAATTA  795

seq1  AGATCTATTAAGATCCGATAATATACTAAATATCTATGATTGTTCAAAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTATTAAGATCCGATAATATACTAAATATCTATGATTGTTCAAAAA  845

seq1  TGCTTTTAAAGGCTTAGCCAACTTACTTTAAAAAAACTAGCCACTGAGTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAAAGGCTTAGCCAACTTACTTTAAAAAAACTAGCCACTGAGTT  895

seq1  TCTATATTAAATGTATCTTAGTAGCATGAATAGTCTCTTCATGATTATAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTAAATGTATCTTAGTAGCATGAATAGTCTCTTCATGATTATAA  945

seq1  AAGATTCATTTGATTCCTGAGAAATGATTCTGTACTGTAGGGTTTTGAGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCATTTGATTCCTGAGAAATGATTCTGTACTGTAGGGTTTTGAGT  995

seq1  TATGACCCAAAGACACAAATGATGCCTCTAGTAGAATATTGGTAGCAAGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCCAAAGACACAAATGATGCCTCTAGTAGAATATTGGTAGCAAGT  1045

seq1  AATCTTTCTGTGCAGTCTTTGCAGTATAATATTGGGCATAAATGCTATGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTGTGCAGTCTTTGCAGTATAATATTGGGCATAAATGCTATGA  1095

seq1  GTGAGCTCATACCTTTAGGGGAAATCCTTTTGATTTTACCATTGAGTATG  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCATACCTTTAGGGGAAATCCTTTTGATTTTACCATTGAGTATG  1145

seq1  CTGATAACTATATACTTGTCACATGGCAATTATTATGTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAACTATATACTTGTCACATGGCAATTATTATGTGAATTC  1189


seq1: chr3_7166969_7168000
seq2: B6Ng01-218H16.g_63_1083

seq1  GAATTCCAAGCTCGTTGGATTCAAGGATTTTCTAGGATGTTGGAACACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTCGTTGGATTCAAGGATTTTCTAGGATGTTGGAACACTG  50

seq1  GTGGAGGCTCACCTATGTTAAAATTCAATATTTAAAGGCACTTATAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCTCACCTATGTTAAAATTCAATATTTAAAGGCACTTATAATAA  100

seq1  AACAATACTGAAAGAGAGCATACATCATACTAACGCAGGGGTAGGGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACTGAAAGAGAGCATACATCATACTAACGCAGGGGTAGGGTTTG  150

seq1  AGTATATGGATTATGAGAATGCCAAGATTCCAGGAGGCTGAGTTTCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGGATTATGAGAATGCCAAGATTCCAGGAGGCTGAGTTTCCTTG  200

seq1  AAACTATGCCTCATGACTCCTTTCAGGCCTCTTGGCCTGTAAAGCAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGCCTCATGACTCCTTTCAGGCCTCTTGGCCTGTAAAGCAGACT  250

seq1  TCCCTGGAATGGGTGTAGCAGGTAGGCTCAGTTTTTTTGGTCTTGCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAATGGGTGTAGCAGGTAGGCTCAGTTTTTTTGGTCTTGCTTAA  300

seq1  AGAACTATTACTGTGAGTTTTTGGGTTGAAGGCAGCAAAGGAAGATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATTACTGTGAGTTTTTGGGTTGAAGGCAGCAAAGGAAGATCAGA  350

seq1  AAGTGTTCTTAATCTCTTCAGCACCTTGTTTTAAAGTTTTGTTCTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCTTAATCTCTTCAGCACCTTGTTTTAAAGTTTTGTTCTTTGTT  400

seq1  TTGGACTAGTTTTTCATTTTCATTTTTGTTTTTTATGTTCTTGTTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTAGTTTTTCATTTTCATTTTTGTTTTTTATGTTCTTGTTTTGTT  450

seq1  TTGTTTTGTTTTGGCAAGGTCTCCATGTAGCTCAGGTTGGTCTTGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGGCAAGGTCTCCATGTAGCTCAGGTTGGTCTTGAACTC  500

seq1  ACTGTGGTACCAAGGATAATCTTGAACTCCAGATCCTACTACCTCTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTACCAAGGATAATCTTGAACTCCAGATCCTACTACCTCTACCT  550

seq1  GCCAACCACTGGTATGACAGGTACCACAAGGTCCAACATTTTAAAGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCACTGGTATGACAGGTACCACAAGGTCCAACATTTTAAAGTCTT  600

seq1  TCCATAAGTCATAGGGTTACTGAAGATGTTGAGAATGCACTATTTCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGTCATAGGGTTACTGAAGATGTTGAGAATGCACTATTTCCTAG  650

seq1  TTCTATATGCTGGGGGAAATCGGAATTAATCTGTGCTCTGTTGGTAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATGCTGGGGGAAATCGGAATTAATCTGTGCTCTGTTGGTAGTAA  700

seq1  TAAGAATAATGTGGTATTGTATTTACTAATGGTGTACTGCAGACTCACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATAATGTGGTATTGTATTTACTAATGGTGTACTGCAGACTCACTA  750

seq1  GCATTGAGATGAAAAAGTCAAGTTACCTATTGTCTTTTTACCATGGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCATTGAGATGAAAAAGTCAAGTTACCTATTGTCTTTTTACAATGGAGAG  800

seq1  TTGCTTACAAAACAGATCTAAAGGGTTCAATGTTCTCAT-CCTAGTCCAT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGCTTACAAAACAGATCTAAAGGGTTCAATGTTCTCATCCCTAGTCCAT  850

seq1  GTACCTGTGTAATATCTTTTGCCTTTTATTAAAACCAGATATTTTTATAA  899
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GTACCTGTGTAATATCTTTTGCCTTTTATT-AAACCAGATATTTTTAT-A  898

seq1  CATA-TTATGTTATGATTAGTTTTCCCTGACAATATGCCTCTAACTTTCT  948
      |||| ||||||||||| ||| ||||||||||||||||||||||  |||||
seq2  CATATTTATGTTATGA-TAG-TTTCCCTGACAATATGCCTCTACTTTTCT  946

seq1  CCTTTGCATCTGGAGCTGCCCCTTTCTATCTCTCATA-TTTATCTTAGAA  997
       |||||||||||||||||||||||||||||||  ||| ||||||| ||||
seq2  -CTTTGCATCTGGAGCTGCCCCTTTCTATCTCCTATATTTTATCTAAGAA  995

seq1  A-CAATTGCTTTAAGGCAAAATAATAAAATATAAAT  1032
      | || |||||||| |            |||||||||
seq2  ACCATTTGCTTTACG----------CTAATATAAAT  1021


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