BAC Information

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BAC

Clone NameB6Ng01-219J09
Chromosome3 (Build37)
Map Location 128,116,738 - 128,117,837
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219J09.bB6Ng01-219J09.g
ACCGA035378GA035379
length7081,108
definitionB6Ng01-219J09.b B6Ng01-219J09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaacatcttcaaactagttgaagaatacctaagtacagatca
agagaacaaaaacaattcttaatcaaacaaagaagtggttccaagattca
gaaaaaaatattcagtgaagagacagcattgctgagaataattagactga
aacaatgctagaaaagaaaaatctaacaagtcaaaatgagaaaacaaata
tctgggtttggaaacaaggtaaaagaattgagttgttcataaaagtcaat
gataaaaaagttgaacataataatactttgagataccacaaagagaccaa
atacttcaattatggttataaaagaagaaaaacccagacactattgcata
tgccagaaagattttgctgaagggaccctgttatagctgtctcatatgag
gctatgccagtgcctggcaaatacagaagtggatgctcacagtcatctag
aagatggaacacagggcccccaatggagaatctagagaaagcacccaagg
aactgaaggggtctgcaaccctataggtggaacaacaatatgaattaacc
agtacccccagagctcttatctctagctgcatatgtagcagaagatgtcc
tagtcggccatcactgggaagagaggcccctaggtcttgcaaactttata
tgccccagtacaggggaatgccagggccaagaagtgggagtaggtgggta
ggggagca
gaattccatcttatttgcctgtaattttaaaacttctttacatctctgta
attaataataaaatgagaacttaactcaaataaaactatactttattatc
tgagatatcactgaaataatgctttaatatagagcatattaatatacttt
taattttgctcaatataaaataagtttcacattggttaatttgttatttc
atttagtctttgggcaagaaaatattagaatgtagtttttaaatcatggc
aatatttttgaagaaaattaaatgaataatctcagaaccaaataagaagt
tgtctagaaccaaattaatgtgattattgtgaaagacaacactatttttc
ctttatttcctgatatacaaatatgtatatatacacacacatataaacac
tatatatatgcacacacatatatgcacacgtatatacataaatgccccat
gtacatatatgaaatctctgatggttgttttctggtagtatatgccagtc
acttgtcgtctctccctaggctcaacatatgaagttgcttcagagcagag
gtcatcagacgaacatgccctggatttgctaatggctggaatcacctgat
ggcagtatgctcctgtctcccatttctaccctcagttgtacgtcatctag
catgtacacagcctatcggctgaccaaataaccaatcataaccctccata
gttgaacaccaaaaaatgagtaatgttaccaccaagaaacacagtatgtg
ttccatactctacagcatatcatgggaagcactaatgctcttcaactcag
tacaggtaagacattactcataatagtttcattgtattcttggcttcatg
cattttctccaatgcaactcatactctcctctcataactgcattgctcaa
cttcatatgtctttgtcatttaactttatggaatgttcttttgtaattgt
gtttaaacttttcacaatcagctatttgggtagaaaggaaatctctgggc
atagttttcttgtgtttttcaggcgaagatcagcttggtcatgttttaag
ctgagcataatttaaacaaggtccttctgatcctactgtgaatatctgag
tggggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128116738_128117837
seq2: B6Ng01-219J09.g_68_1175

seq1  GAATTCCATCTTATTTGCCTGTAATTTTAAAACTTCTTTACATCTCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTATTTGCCTGTAATTTTAAAACTTCTTTACATCTCTGTA  50

seq1  ATTAATAATAAAATGAGAACTTAACTCAAATAAAACTATACTTTATTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATAAAATGAGAACTTAACTCAAATAAAACTATACTTTATTATC  100

seq1  TGAGATATCACTGAAATAATGCTTTAATATAGAGCATATTAATATACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATCACTGAAATAATGCTTTAATATAGAGCATATTAATATACTTT  150

seq1  TAATTTTGCTCAATATAAAATAAGTTTCACATTGGTTAATTTGTTATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCTCAATATAAAATAAGTTTCACATTGGTTAATTTGTTATTTC  200

seq1  ATTTAGTCTTTGGGCAAGAAAATATTAGAATGTAGTTTTTAAATCATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCTTTGGGCAAGAAAATATTAGAATGTAGTTTTTAAATCATGGC  250

seq1  AATATTTTTGAAGAAAATTAAATGAATAATCTCAGAACCAAATAAGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTGAAGAAAATTAAATGAATAATCTCAGAACCAAATAAGAAGT  300

seq1  TGTCTAGAACCAAATTAATGTGATTATTGTGAAAGACAACACTATTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGAACCAAATTAATGTGATTATTGTGAAAGACAACACTATTTTTC  350

seq1  CTTTATTTCCTGATATACAAATATGTATATATACACACACATATAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCCTGATATACAAATATGTATATATACACACACATATAAACAC  400

seq1  TATATATATGCACACACATATATGCACACGTATATACATAAATGCCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGCACACACATATATGCACACGTATATACATAAATGCCCCAT  450

seq1  GTACATATATGAAATCTCTGATGGTTGTTTTCTGGTAGTATATGCCAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATATGAAATCTCTGATGGTTGTTTTCTGGTAGTATATGCCAGTC  500

seq1  ACTTGTCGTCTCTCCCTAGGCTCAACATATGAAGTTGCTTCAGAGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCGTCTCTCCCTAGGCTCAACATATGAAGTTGCTTCAGAGCAGAG  550

seq1  GTCATCAGACGAACATGCCCTGGATTTGCTAATGGCTGGAATCACCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGACGAACATGCCCTGGATTTGCTAATGGCTGGAATCACCTGAT  600

seq1  GGCAGTATGCTCCTGTCTCCCATTTCTACCCTCAGTTGTACGTCATCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTATGCTCCTGTCTCCCATTTCTACCCTCAGTTGTACGTCATCTAG  650

seq1  CATGTACACAGCCTATCGGCTGACCAAATAACCAATCATAACCCTCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACACAGCCTATCGGCTGACCAAATAACCAATCATAACCCTCCATA  700

seq1  GTTGAACACCAAAAAATGAGTAATGTTACCACCAAGAAACACAGTATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACACCAAAAAATGAGTAATGTTACCACCAAGAAACACAGTATGTG  750

seq1  TTCCATACTCTACAGCATATCATGGGAAGCACTAATGCTCTTCAACTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATACTCTACAGCATATCATGGGAAGCACTAATGCTCTTCAACTCAG  800

seq1  TACAGGTAAGACATTACTCATAATAGTTTCATTGTATTCTTGGCTTCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTAAGACATTACTCATAATAGTTTCATTGTATTCTTGGCTTCATG  850

seq1  CATTTTCTCCAATGCAACTCATACTCTCCTCTCATAACTGCATTGCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCCAATGCAACTCATACTCTCCTCTCATAACTGCATTGCTCAA  900

seq1  CTTCATATGTCTTTGTCATTTAACTTTATGGAATGT--CTTTGTAATTGT  948
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  CTTCATATGTCTTTGTCATTTAACTTTATGGAATGTTCTTTTGTAATTGT  950

seq1  GTTTAAACTTTTCACAATCAGCTATTT-GGTAGAAAGGAAAATCTCT-GG  996
      ||||||||||||||||||||||||||| |||||||||| |||||||| ||
seq2  GTTTAAACTTTTCACAATCAGCTATTTGGGTAGAAAGG-AAATCTCTGGG  999

seq1  CATAG-TTTCTTGTG-TTTTCA-GCGAAGATCAGCTTGGTCATG-TTTAA  1042
      ||||| ||||||||| |||||| ||||||||||||||||||||| |||||
seq2  CATAGTTTTCTTGTGTTTTTCAGGCGAAGATCAGCTTGGTCATGTTTTAA  1049

seq1  GCTGAGCATTAATTTAAACAA-GTTCTTCTGAT-CTACTGTTGATATCTG  1090
      |||||||| |||||||||||| || |||||||| |||||||  |||||||
seq2  GCTGAGCA-TAATTTAAACAAGGTCCTTCTGATCCTACTGTGAATATCTG  1098

seq1  AGTGGGGCTA  1100
      ||||||||||
seq2  AGTGGGGCTA  1108