BAC Information

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BAC

Clone NameB6Ng01-223A03
Chromosome3 (Build37)2 (Build37)
Map Location 45,387,121 - 45,387,636178,753,503 - 178,754,568
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223A03.bB6Ng01-223A03.g
ACCGA037870GA037871
length1,0521,063
definitionB6Ng01-223A03.b B6Ng01-223A03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,387,121 - 45,387,636)(178,753,503 - 178,754,568)
sequence
gaattctttgtttagctctgagccccattttttaaatggagttatttgat
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggcc
tttttgtcttatttacagtatcttttgccttacagaagctttgcaatttt
atgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgt
tctattcaggaattttttcccctgtgcccatatcttcaaggcttttcccc
actttctcctctataagtttcactgtctctggttttatgtggagttcctt
aatccacttagatttgaccttagtaccgggagataagaatggatcgattc
gcattcttctacatgttaactgccagttgtgccagcaccatttgttgaaa
atgctgtcttttttccactggatggttttagctcccttgtcaaagatcaa
gtgaccataggtgtatgggttcatttctgggtcttcaattctattccatt
ggtctacttgtctgaggctataccagtaccatgcagtttttatctcaatt
gctctggtcaggcatggtgattccaccagaggttcttttatccttgagaa
gagttttttgctatcctaggttttttgttattccagatgaattttcagat
tgctctttctaattcgttgaagaattgagttgaaattttgatggggattt
gcattgaatctgtagattgcttttggcaagatagccatttttactatatt
tgatcctgccaatccattgagcatgggagatctttccatcttctgagatc
ttctttaatttctttcttcagagacttgaagttcttatcatacagatatt
ttcacttccttagtaagagtcacgccaaggtattttatattatttgtgac
tattgagaagggtgttgtttccctaattctttctcagcctgtttatcctt
tgtgtagaagaaaggccattgacttgtttggatttaaattttatatccag
ct
gaattcaatagcagctggttttccggcagagatactgcagcggtgtgtaa
gattattaccatctagcgtttatcgagcactcacccagagaaggacgagg
cactagacaccgtgtgagagatatttaaaagacaggcagctatggcaacc
tgcagacaagaattatcgatagaaagaaacaactcggctttctttgggag
atacttaattgcatctggacatatttacatattttctttgtgacactctt
agttaaaaagaaaacaagaaaaggcatatgaaagaataacaagctagaag
aagaaaagaataaaaacattacttttcagttcagggagaaacacaggaag
gcagggttctccattccctcatctggtttcagaaactgccatgtttgtgg
acttccacggtaaaaacctggttttaatgtcagctgcccactgacaccct
ccacctggacttcacaaaggaagagctcaggacctgggagcctccctcct
acagctcccacaatcctcttctgatgatcactggcctcatcagcctcacc
ttgaagggcatctttgacatttctggtctccacccacatcctgtgaatca
gcttgcacatgtgggatgccatgtcagcctctccacacacctgtcccacg
ttccatggccctctgactcagccttcctctccattgctgctgggagctct
gctcagcacttgctgggtgcaaggctgagccatcacccctgacatcatgc
caccatgacacacctcagagaatatgtttctcagcacctcaaggccaatg
ccaatagtcctaaacaaggcattgcccatcccctgacatactatccacct
ttctccccttgtggggtgcagtcccagatactagaaattcttttgggttc
cctcctgtcttttgacttcatgtctgtgtatctttacttaaggattccat
tgacctgaaatatatctttcatttctcaatcttctctgtattttccatac
tcacagtgtacacaactcattcctcaagtccctctcttctgcacatataa
ctttcagaatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45387121_45387636
seq2: B6Ng01-223A03.b_586_1094 (reverse)

seq1  AGCTGGATATAAAATT--AACTCAAACAAGTCAATGGCCTTTC-TCTACA  47
      ||||||||||||||||  ||  ||||||||||||||||||||| ||||||
seq2  AGCTGGATATAAAATTTAAATCCAAACAAGTCAATGGCCTTTCTTCTACA  50

seq1  CAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCA  97
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  CAAAGGATAAACAGGCTGAGAAAG-AATTAGGGAAACAACACCCTTCTCA  99

seq1  ATAGCCACAAATAATATAAAATATCTCGGCGTGACTCTAACGAAGGAAGT  147
      |||| |||||||||||||||||| || ||||||||||| || ||||||||
seq2  ATAGTCACAAATAATATAAAATACCTTGGCGTGACTCTTACTAAGGAAGT  149

seq1  G-AAAGATCTGTATGATAAAAACTTCAAGTCCCTGAAGAAAGAAATTAAA  196
      | ||| ||||||||||||| ||||||||||| ||||||||||||||||||
seq2  GAAAATATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAA  199

seq1  GAAGATCTCAGAAGATGGAAAGATCTCCCATGCTC-ATGGATTGGCAGGA  245
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAATGGATTGGCAGGA  249

seq1  -CCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAA  294
       | || || |||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAA  299

seq1  TGC-AATCCCCATTAAAATTCCAACTCAATTCTTCAACGAACTAGAAGGA  343
      ||| ||||||||| |||||| |||||||||||||||||||| ||||| ||
seq2  TGCAAATCCCCATCAAAATTTCAACTCAATTCTTCAACGAATTAGAAAGA  349

seq1  GCAATTTGCAAATTCATCTGGAATAACAAAAAACCGAGGATAGC-AAAAA  392
      ||||| || |||||||||||||||||||||||||| |||||||| |||||
seq2  GCAATCTGAAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAA  399

seq1  CTCTTCTCAAGGATAAAAGAACTTCTGGTGGAATCACCATGCCTGACCTA  442
      |||||||||||||||||||||| ||||||||||||||||||||||||   
seq2  CTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGAC---  446

seq1  AAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAG  492
                 ||||||||||| |||||||||||||||||||||||||||
seq2  -----------CAGAGCAATTGAGATAAAAACTGCATGGTACTGGTATAG  485

seq1  AGACAGACAAGTGGACCAATGGAA  516
         ||||||||| |||||||||||
seq2  CCTCAGACAAGTAGACCAATGGAA  509

seq1: chr2_178753503_178754568
seq2: B6Ng01-223A03.g_68_1130

seq1  GAATTCAATAGCAGCTGGTTTTCCGGCAGAGATACTGCAGCGGTGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGCAGCTGGTTTTCCGGCAGAGATACTGCAGCGGTGTGTAA  50

seq1  GATTATTACCATCTAGCGTTTATCGAGCACTCACCCAGAGAAGGACGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTACCATCTAGCGTTTATCGAGCACTCACCCAGAGAAGGACGAGG  100

seq1  CACTAGACACCGTGTGAGAGATATTTAAAAGACAGGCAGCTATGGCAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGACACCGTGTGAGAGATATTTAAAAGACAGGCAGCTATGGCAACC  150

seq1  TGCAGACAAGAATTATCGATAGAAAGAAACAACTCGGCTTTCTTTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAAGAATTATCGATAGAAAGAAACAACTCGGCTTTCTTTGGGAG  200

seq1  ATACTTAATTGCATCTGGACATATTTACATATTTTCTTTGTGACACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAATTGCATCTGGACATATTTACATATTTTCTTTGTGACACTCTT  250

seq1  AGTTAAAAAGAAAACAAGAAAAGGCATATGAAAGAATAACAAGCTAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAGAAAACAAGAAAAGGCATATGAAAGAATAACAAGCTAGAAG  300

seq1  AAGAAAAGAATAAAAACATTACTTTTCAGTTCAGGGAGAAACACAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAATAAAAACATTACTTTTCAGTTCAGGGAGAAACACAGGAAG  350

seq1  GCAGGGTTCTCCATTCCCTCATCTGGTTTCAGAAACTGCCATGTTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTTCTCCATTCCCTCATCTGGTTTCAGAAACTGCCATGTTTGTGG  400

seq1  ACTTCCACGGTAAAAACCTGGTTTTAATGTCAGCTGCCCACTGACACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACGGTAAAAACCTGGTTTTAATGTCAGCTGCCCACTGACACCCT  450

seq1  CCACCTGGACTTCACAAAGGAAGAGCTCAGGACCTGGGAGCCTCCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGACTTCACAAAGGAAGAGCTCAGGACCTGGGAGCCTCCCTCCT  500

seq1  ACAGCTCCCACAATCCTCTTCTGATGATCACTGGCCTCATCAGCCTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCCACAATCCTCTTCTGATGATCACTGGCCTCATCAGCCTCACC  550

seq1  TTGAAGGGCATCTTTGACATTTCTGGTCTCCACCCACATCCTGTGAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGCATCTTTGACATTTCTGGTCTCCACCCACATCCTGTGAATCA  600

seq1  GCTTGCACATGTGGGATGCCATGTCAGCCTCTCCACACACCTGTCCCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACATGTGGGATGCCATGTCAGCCTCTCCACACACCTGTCCCACG  650

seq1  TTCCATGGCCCTCTGACTCAGCCTTCCTCTCCATTGCTGCTGGGAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGCCCTCTGACTCAGCCTTCCTCTCCATTGCTGCTGGGAGCTCT  700

seq1  GCTCAGCACTTGCTGGGTGCAAGGCTGAGCCATCACCCCTGACATCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCACTTGCTGGGTGCAAGGCTGAGCCATCACCCCTGACATCATGC  750

seq1  CACCATGACACACCTCAGAGAATATGTTTCTCAGCACCTCAAGGCCAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACACACCTCAGAGAATATGTTTCTCAGCACCTCAAGGCCAATG  800

seq1  CCAATAGTCCTAAACAAGGCATTGCCCATCCCCTGACATACTATCCACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGTCCTAAACAAGGCATTGCCCATCCCCTGACATACTATCCACCT  850

seq1  TTCTCCCCTTGTGGGGTGCAGGTCCCAGATACTAGAAATTCTTTTGGGTT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTCCCCTTGTGGGGTGCA-GTCCCAGATACTAGAAATTCTTTTGGGTT  899

seq1  CCCTCCTGTCTTTTGACTTCATGTCTGTGTATCTTTACTTAAGGATTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGTCTTTTGACTTCATGTCTGTGTATCTTTACTTAAGGATTCCA  949

seq1  TTGACCTGAAATATATCTTTCATTTCCTCAATCTTCTCTGTATTTTCCAT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGACCTGAAATATATCTTTCATTT-CTCAATCTTCTCTGTATTTTCCAT  998

seq1  ACCTCACAAGTGTACACAACTCA-TCCTCAGGTCCCCTCTCTTCCTGCAC  1049
      | ||||| ||||||||||||||| |||||| || ||||||||| ||||||
seq2  A-CTCAC-AGTGTACACAACTCATTCCTCAAGT-CCCTCTCTT-CTGCAC  1044

seq1  ATATAAC-TTCAG-ATCCC  1066
      ||||||| ||||| |||||
seq2  ATATAACTTTCAGAATCCC  1063