MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-223F15
Chromosome	3 (Build37)
Map Location	54,451,431 - 54,640,367
singlet/doublet	doublet
Overlap gene	D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524
Upstream gene	Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik
Downstream gene	6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Frem2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242022 MGI:2444465
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppia-ps3_416.1 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606547
definition	note : peptidylprolyl isomerase A pseudogene 3_416.1 pseudo : _no_value

name	LOC621155 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1719 ESTs, 7 Proteins pseudo : _no_value

name	Ufm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67890 MGI:1915140
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666444 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666444 MGI:3645533
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 10 Proteins pseudo : _no_value

name	LOC100039937 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Trpc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22066 MGI:109525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Postn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50706 MGI:1926321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039951 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039951
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC434807 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:434807
definition	note : heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo : _no_value

name	B020017C02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212507 MGI:3588285
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins

name	D3Ertd300e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56790 MGI:1929651
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Exosc8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69639 MGI:1916889
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Alg5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66248 MGI:1913498
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smad9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55994 MGI:1859993
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rfxap (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170767 MGI:2180854
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545524 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545524
definition	note : splicing factor, arginine/serine-rich 10-like pseudo : _no_value

name	6030405A18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329641 MGI:3607715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccna1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12427 MGI:108042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4931419H13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70970 MGI:1918220
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Spg20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229285 MGI:2139806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A730037C10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320604 MGI:2444356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sohlh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74434 MGI:1921684
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dclk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13175 MGI:1330861
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mab21l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17116 MGI:1333773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Frem2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110815845 GeneID:242022 MGI:2444465
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Fras1 related extracellular matrix protein 2 transcript_id : NM_172862.3

name	Ufm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802809 GeneID:67890 MGI:1915140
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-fold modifier 1 transcript_id : NM_026435.3

name	LOC100039937 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251153 GeneID:100039937
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039937 transcript_id : XM_001473818.1

name	Trpc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131192 GeneID:22066 MGI:109525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily C, member 4 transcript_id : NM_016984.2

name	Postn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131080 GeneID:50706 MGI:1926321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : periostin, osteoblast specific factor transcript_id : NM_015784.2

name	B020017C02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369558 GeneID:212507 MGI:3588285
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : RIKEN cDNA B020017C02 gene transcript_id : XM_143238.5

name	D3Ertd300e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367198 GeneID:56790 MGI:1929651
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 3, ERATO Doi 300, expressed transcript_id : NM_019995.2

name	Exosc8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254485 GeneID:69639 MGI:1916889
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exosome component 8 transcript_id : NM_027148.2

name	Alg5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370271 GeneID:66248 MGI:1913498
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase) transcript_id : NM_025442.2

name	Smad9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802048 GeneID:55994 MGI:1859993
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAD homolog 9 (Drosophila) transcript_id : NM_019483.4

name	Rfxap (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133930776 GeneID:170767 MGI:2180854
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulatory factor X-associated protein transcript_id : NM_133231.2

name	6030405A18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353393 GeneID:329641 MGI:3607715
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6030405A18 gene transcript_id : NM_177854.3

name	Ccna1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802415 GeneID:12427 MGI:108042
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin A1 transcript_id : NM_007628.2

name	4931419H13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251155 GeneID:70970 MGI:1918220
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4931419H13 gene transcript_id : XM_001473883.1

name	Spg20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450268 GeneID:229285 MGI:2139806
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) transcript_id : NM_144895.1

name	A730037C10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28893224 GeneID:320604 MGI:2444356
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A730037C10 gene transcript_id : NM_177203.1

name	Sohlh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802936 GeneID:74434 MGI:1921684
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spermatogenesis and oogenesis specific basic helix-loop-helix 2 transcript_id : NM_028937.2

name	Dclk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130532 GeneID:13175 MGI:1330861
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : doublecortin-like kinase 1 transcript_id : NM_019978.2

name	Mab21l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560806 GeneID:17116 MGI:1333773
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mab-21-like 1 (C. elegans) transcript_id : NM_010750.2

name	Frem2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71051607 CCDS:CCDS17348.1 GeneID:242022 MGI:2444465
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007154 - cell communication [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA]; GO:0002009 - morphogenesis of an epithelium [Evidence IMP] codon_start : 1 note : embryonic blastocoelar extracellular matrix protein-like; NV domain containing protein NV1 product : Fras1 related extracellular matrix protein 2 protein_id : NP_766450.2

name	Ufm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385932 GeneID:67890 MGI:1915140
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ubiquitin-fold modifier 1 protein_id : NP_080711.1

name	LOC100039937 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251154 GeneID:100039937
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473868.1

name	Trpc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8394487 CCDS:CCDS17350.1 GeneID:22066 MGI:109525
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : putative capacitative calcium entry channel; transient receptor protein 4 product : transient receptor potential cation channel, subfamily C, member 4 protein_id : NP_058680.1

name	Postn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657429 CCDS:CCDS17351.1 GeneID:50706 MGI:1926321
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA] GO_function : GO:0008201 - heparin binding [Evidence IEA] [Evidence IDA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] [Evidence IDA]; GO:0030198 - extracellular matrix organization and biogenesis [Evidence IMP]; GO:0009888 - tissue development [Evidence IMP] codon_start : 1 product : osteoblast specific factor 2 (fasciclin I-like) protein_id : NP_056599.1

name	B020017C02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38076535 GeneID:212507 MGI:3588285
definition	codon_start : 1 product : similar to REX1, RNA exonuclease 1 homolog (S. cerevisiae) protein_id : XP_143238.2

name	D3Ertd300e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910330 GeneID:56790 MGI:1929651
definition	codon_start : 1 note : p38 interacting protein; transcription factor (p38 interacting protein) product : hypothetical protein LOC56790 protein_id : NP_064379.1

name	Exosc8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254486 CCDS:CCDS17352.1 GeneID:69639 MGI:1916889
definition	GO_component : GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation product : CBP-interacting protein 3 protein_id : NP_081424.2

name	Alg5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21728372 CCDS:CCDS17353.1 GeneID:66248 MGI:1913498
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004581 - dolichyl-phosphate beta-glucosyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0007368 - determination of left/right symmetry [Evidence IMP] codon_start : 1 note : Alg5 homolog product : dolichyl-phosphatebeta-glucosyltransferase-like protein_id : NP_079718.1

name	Smad9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84490384 CCDS:CCDS17354.1 GeneID:55994 MGI:1859993
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030902 - hindbrain development [Evidence IMP]; GO:0030901 - midbrain development [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : MAD homolog 9 protein_id : NP_062356.3

name	Rfxap (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875392 GeneID:170767 MGI:2180854
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA] codon_start : 1 exception : alternative start codon note : non-AUG (ACG) translation initiation codon product : regulatory factor X-associated protein protein_id : NP_573494.1 transl_except : (pos:complement(54611595..54611597),aa:Met)

name	6030405A18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244446 CCDS:CCDS17355.1 GeneID:329641 MGI:3607715
definition	codon_start : 1 product : hypothetical protein LOC329641 protein_id : NP_808522.1

name	Ccna1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680864 CCDS:CCDS17356.1 GeneID:12427 MGI:108042
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : cyclin A1 protein_id : NP_031654.1

name	4931419H13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251156 GeneID:70970 MGI:1918220
definition	codon_start : 1 product : hypothetical protein LOC70970 protein_id : XP_001473933.1

name	Spg20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450269 GeneID:229285 MGI:2139806
definition	codon_start : 1 product : spastic paraplegia 20, spartin (Troyer syndrome) homolog protein_id : NP_659144.1

name	A730037C10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893225 CCDS:CCDS17357.1 GeneID:320604 MGI:2444356
definition	codon_start : 1 product : hypothetical protein LOC320604 protein_id : NP_796177.1

name	Sohlh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312740 CCDS:CCDS17358.1 GeneID:74434 MGI:1921684
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein_id : NP_083213.1

name	Dclk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910164 CCDS:CCDS17359.1 GeneID:13175 MGI:1330861
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0030900 - forebrain development [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001764 - neuron migration [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : doublecortin-like kinase; CLICK-I beta; doublecortin and calcium/calmodulin-dependent protein kinase-like 1 product : double cortin and calcium/calmodulin-dependent protein kinase-like 1 protein_id : NP_064362.1

name	Mab21l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754598 CCDS:CCDS17360.1 GeneID:17116 MGI:1333773
definition	GO_process : GO:0001747 - eye development (sensu Mammalia) [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP] codon_start : 1 product : mab-21-like 1 protein_id : NP_034880.1

name	LOC100039951 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039951
definition	number : 2 pseudo : _no_value

name	LOC100039951 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039951
definition	number : 1 pseudo : _no_value

name	LOC621155 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251151 GeneID:621155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1719 ESTs, 7 Proteins product : similar to 40S ribosomal protein S14 pseudo : _no_value transcript_id : XR_031236.1

name	EG666444 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94369557 GeneID:666444 MGI:3645533
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 10 Proteins product : predicted gene, EG666444 pseudo : _no_value transcript_id : XR_001873.1

clone name	MSMg01-538O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068N16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-278L04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-466D01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-473L24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-496H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209F06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092F02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-223F15.b	B6Ng01-223F15.g
ACC	GA038117	GA038118
length	875	1,041
definition	B6Ng01-223F15.b	B6Ng01-223F15.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(54,639,834 - 54,640,367)	(54,451,431 - 54,452,468)
sequence	gaattctttgtgtagctctgtaccccgttttaatagagttaattgtttct ctggagtctaacttcttgagttctttgtatatattagatattagccctct aatgtaggatgtagggttggtaaagatcttttctcaaactgttggttgcc tttttgtcttattgacagtgtcctttgccttacagaagctttgcaatttc atgaggtcctatttgtcaattctgatcttacagcacaagccattggtgtt ctgttcaggatcattttttttaaataaatcgttccacacctccagctctg agtagcgtgattggtagaaggtcattattgggcctgagagatggcttagc agctaagaacatgaactgcgggctggagagatggctcagcggttaaaagc actgactgctcttctgaagtgcatgagttcaaatcccagcaaccacatgg tggctcacagccatctgtaacgagatctatcgccctcttctggggtgtct gaagacagctagaggtacttagatataataataaataaaccttcaaaaaa aaagaagaacctgaactgctcttgcatagaatttgagttcagttctcagc accacatcgggtagttcacaagcatctgtaactccagctcccgatatccc acacctccgacatacagggaactacactcatatgcaaacgcctcttccac atgcacatattataaataagatacttttcaaaaaaagaaacttagtattg cccttggtttctgcagagctaaggctagtttttgtcccttagcaggtcac tcaaacacatttgccattggattcgatcatcagttaagcaaatacggggc tcaaagtagagacaaagatgaacgc	gaattcacttaaaacttttagaagacaaaggtgcaatccgtgtcttacat tttatatcgtattcctatgcggacagatggtgaattctaccaacagacaa atgatgtcaagttttctggaagaaaactttaaactgaggttctctctgtc ttacaggaacctcagggtccctgatggctcccccccacccccaataatga atgtttatcccagctcttttccttgccagaatgttttgcagccaagcact aaatcagaagccagtagatttccctggaggtatgaccacatcgaatactc agcaaggcttgaattcattttgttccaaagttttctaaggaactcataag ataatctctgaatctagagatgttagtcacggggcctaaaggaatacacc tccactgaaccaacaagaaaaaacagcagtagcagaaaataggctgcaga aatctgcaccaggcttcccagatttttaaaacaaggattcctgagtgata tgtgaaaatggtttgctaatttttaaaaactacgtgcttagcatgttaag tctctcagcatctgatataagtgaatttttctttagggcagcaagacttg gtttgggtttagctgtagtgcagggggtaaaattcaggaccctgcccttg cacatgcaggcaaggactgtaccactgagctgcacctcagggctcacaac ctttcatttaacaacaattgagtgattcttcacactgaatctgtgttctg atacaccactggcaaagctcgatgctgctagaaatcatgtccaatcaaat gacagttcccccctctctaaaggacttttctcctataacaattttgagga aaatagctcatgattagagacattgatgagataagagcagagttactgac cactctccaacccctgccatcctgatagcacacaatctcctgagatacca ggcccagaaaaaacataggaaaactctgggaaactgcaaattgggtctat gcagactgcagagaaatatgtgtttcactctggagccccta
quality values	Open. Hide. 41 14 19 14 52 58 39 46 58 58 41 31 54 39 62 62 62 62 62 62 62 43 62 62 62 62 62 62 62 62 54 33 15 22 19 10 21 14 24 36 36 32 23 32 28 38 59 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 39 34 46 34 32 34 50 49 46 34 54 48 56 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 49 62 59 51 56 56 54 59 62 62 54 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 59 59 59 59 51 59 59 59 28 56 56 62 59 59 62 62 62 62 59 59 62 62 59 59 59 56 56 62 50 59 62 62 62 62 59 59 62 62 59 62 62 59 59 62 62 59 46 62 62 62 62 62 62 62 62 62 59 50 43 51 34 45 50 43 38 45 38 50 59 62 56 62 62 62 62 62 62 59 59 51 59 62 51 62 62 62 62 59 59 56 59 56 62 62 59 62 62 59 59 59 59 51 51 56 62 62 62 62 62 62 56 62 62 62 62 51 62 42 62 47 62 62 56 56 62 51 44 56 56 62 62 56 54 39 56 39 37 51 51 62 56 56 43 56 38 54 56 56 56 56 38 56 56 56 51 38 30 37 42 42 62 62 62 62 42 56 56 56 50 43 43 56 43 42 56 47 38 62 56 47 56 56 56 62 31 33 47 56 50 47 62 62 62 62 56 56 56 54 41 47 54 47 43 52 43 52 34 39 34 27 28 24 52 52 62 50 54 62 35 48 29 28 46 31 62 42 54 54 49 62 62 35 50 38 17 31 42 52 49 39 45 46 52 35 52 48 42 42 26 42 52 52 52 52 45 20 40 52 52 49 48 42 33 42 47 25 41 54 54 54 39 47 52 52 52 41 46 47 27 54 39 36 37 32 32 22 19 40 52 41 33 25 24 22 22 14 27 52 49 28 52 39 35 46 52 42 52 32 42 30 38 30 42 50 54 52 42 50 25 41 26 50 46 37 39 50 35 24 18 17 41 37 42 35 48 48 25 46 47 14 54 17 21 25 39 53 51 41 37 22 19 42 18 23 34 18 17 38 32 48 40 51 50 42 6 7 33 23 16 35 40 40 32 39 22 46 32 27 43 25 17 18 16 14 10 8 54 15 28 41 20 26 6 26 22 29 27 31 41 33 37 31 16 39 17 14 33 20 28 21 38 29 39 29 23 32 7 21 29 35 53 39 30 16 14 28 16 15 7 32 39 32 39 18 41 16 33 33 18 32 26 17 47 39 21 29 42 38 29 52 21 10 11 19 37 39 20 6 27 35 33 39 30 42 31 13 32 22 13 10 21 21 11 7 25 8 8 23 11 31 19 21 27 16 21 11 9 16 10 9 29 24 13 10 9	Open. Hide. 62 47 31 47 62 47 27 54 62 54 62 62 62 22 24 22 22 22 30 24 18 28 28 32 46 34 28 45 50 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 59 43 40 50 33 34 34 32 46 51 59 62 56 59 62 59 62 62 62 54 62 62 62 62 62 59 62 62 62 62 59 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 56 62 62 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 37 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 47 62 62 62 62 62 62 62 62 62 62 62 62 54 47 62 62 62 62 52 58 58 58 58 58 54 58 58 37 42 58 58 58 58 58 58 54 58 58 45 54 49 58 58 58 58 58 58 58 49 54 58 45 39 58 58 58 58 58 54 54 58 58 58 58 58 53 58 58 58 58 58 58 58 58 52 58 58 58 58 58 54 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 51 58 58 58 58 58 58 58 58 50 49 49 50 58 58 58 58 58 52 51 58 58 58 54 58 42 58 58 50 41 58 58 50 52 51 54 51 58 58 44 49 58 58 58 58 58 58 58 58 58 50 58 58 58 53 51 51 58 58 53 51 40 51 58 52 52 37 58 58 58 58 29 49 58 58 46 50 53 51 40 39 58 29 36 58 51 52 58 50 58 51 54 42 49 52 41 53 37 54 58 54 53 50 58 50 50 51 50 58 39 37 51 58 42 41 51 50 34 50 46 46 30 18 54 53 52 50 32 53 53 53 53 37 11 51 54 38 54 42 32 41 40 53 53 53 46 49 49 41 34 50 54 54 32 35 40 31 52 51 18 41 33 33 47 51 40 42 44 40 25 41 47 41 52 53 34 45 39 52 52 39 54 31 30 47 33 35 33 54 40 24 32 40 45 52 32 32 40 31 46 46 34 34 34 42 40 32 45 53 53 32 34 53 32 35 39 37 40 52 43 45 40 53 40 32 41 49 17 25 35 31 34 52 32 53 32 32 42 39 42 42 51 32 37 42 42 22 21 28 37 37 38 51 51 51 46 30 40 32 30 30 23 13 51 30 13 45 31 26 21 46 46 34 45 31 37 37 38 31 31 33 29 38 33 31 31 46 46 10 31 43 27 32 30 46 46 31 31 31 30 31 26 31 32 34 43 41 35 31 25 30 32 28 30 31 13 11 41 32 9 13 31 41 31 26 11 31 31 19 38 18 31 31 15 38 11 32 39 19 25 30 43 32 22 27 21 34 38 31 35 21 26 12 21 32 44 43 21 32 21 22 14 17 27 31 32 18 32 21 28 33 31 31 20 29 18 21 19 35 31 34 42 25 25 20 31 26 12 19 15 27 31 32 23 9 19 25 43 22 7 7 24 30 34 43 43 22 19 16 21 32 10 25 24 48 43 12 15 34 34 16 12 34 12 24 39 23 31 25 24 25 25 43 23 7 19 11 37 14 17 28 27 24 27 20 23 20 16 15 11 27 20 13 6 4 13 7 20 40 16 4 7 6 6 6 11 17 34 21 11 12 18 26 13 10 24 9 22 4 4 22 34 18 20 27

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_54639834_54640367
seq2: B6Ng01-223F15.b_380_918 (reverse)

seq1  GCGTTCATCTTTGTCTCT-CTCTGAGCCCCGTATTTGCTTAACTGATGAT  49
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  GCGTTCATCTTTGTCTCTACTTTGAGCCCCGTATTTGCTTAACTGATGAT  50

seq1  CGAAT-CAATGGC-AATGTGTTTGAGTGACCTGCTAA-GGAC-AAAACTA  95
      ||||| ||||||| ||||||||||||||||||||||| |||| |||||||
seq2  CGAATCCAATGGCAAATGTGTTTGAGTGACCTGCTAAGGGACAAAAACTA  100

seq1  GCCTTAGCTCTGCAGAAACCAAGGGCAATACTAAGTTTC-TTTTTTGAAA  144
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCCTTAGCTCTGCAGAAACCAAGGGCAATACTAAGTTTCTTTTTTTGAAA  150

seq1  AGTATCTTATTTATAATTATGTGCATGTGGAAGAGGCGTTTGCATATGAG  194
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTATCTTATTTATAA-TATGTGCATGTGGAAGAGGCGTTTGCATATGAG  199

seq1  TGTAGTTCCCTGTATGTCGGAGGTGTGGGATATCGGGAGCTGGAGTTACA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCCCTGTATGTCGGAGGTGTGGGATATCGGGAGCTGGAGTTACA  249

seq1  GATGCTTGTGAACTACCCGATGTGGTGCTGAGAACTGAACTCAAATTCTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGTGAACTACCCGATGTGGTGCTGAGAACTGAACTCAAATTCTA  299

seq1  TGCAAGAGCAGTTCAGGTTCTTCTTTTTTTTTGAAGGTTTATTTATTATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGCAGTTCAGGTTCTTCTTTTTTTTTGAAGGTTTATTTATTATT  349

seq1  ATATCTAAGTACCTCTAGCTGTCTTCAGACACCCCAGAAGAGGGCGATAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAAGTACCTCTAGCTGTCTTCAGACACCCCAGAAGAGGGCGATAG  399

seq1  ATCTCGTTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGATTTGAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGTTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGATTTGAAC  449

seq1  TCATGCACTTCAGAAGAGCAGTCAGTGCTTTTAACCGCTGAGCCATCTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCACTTCAGAAGAGCAGTCAGTGCTTTTAACCGCTGAGCCATCTCT  499

seq1  CCAGCCCGCAGTTCATGTTCTTAGCTGCTAAGCCATCTCT  534
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCGCAGTTCATGTTCTTAGCTGCTAAGCCATCTCT  539

seq1: chr3_54451431_54452468
seq2: B6Ng01-223F15.g_68_1108

seq1  GAATTCACTTAAAACTTTTAGAAGACAAAGGTGCAATCCGTGTCTTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAAAACTTTTAGAAGACAAAGGTGCAATCCGTGTCTTACAT  50

seq1  TTTATATCGTATTCCTATGCGGACAGATGGTGAATTCTACCAACAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCGTATTCCTATGCGGACAGATGGTGAATTCTACCAACAGACAA  100

seq1  ATGATGTCAAGTTTTCTGGAAGAAAACTTTAAACTGAGGTTCTCTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCAAGTTTTCTGGAAGAAAACTTTAAACTGAGGTTCTCTCTGTC  150

seq1  TTACAGGAACCTCAGGGTCCCTGATGGCTCCCCCCCACCCCCAATAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGAACCTCAGGGTCCCTGATGGCTCCCCCCCACCCCCAATAATGA  200

seq1  ATGTTTATCCCAGCTCTTTTCCTTGCCAGAATGTTTTGCAGCCAAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATCCCAGCTCTTTTCCTTGCCAGAATGTTTTGCAGCCAAGCACT  250

seq1  AAATCAGAAGCCAGTAGATTTCCCTGGAGGTATGACCACATCGAATACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAGCCAGTAGATTTCCCTGGAGGTATGACCACATCGAATACTC  300

seq1  AGCAAGGCTTGAATTCATTTTGTTCCAAAGTTTTCTAAGGAACTCATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCTTGAATTCATTTTGTTCCAAAGTTTTCTAAGGAACTCATAAG  350

seq1  ATAATCTCTGAATCTAGAGATGTTAGTCACGGGGCCTAAAGGAATACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTGAATCTAGAGATGTTAGTCACGGGGCCTAAAGGAATACACC  400

seq1  TCCACTGAACCAACAAGAAAAAACAGCAGTAGCAGAAAATAGGCTGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGAACCAACAAGAAAAAACAGCAGTAGCAGAAAATAGGCTGCAGA  450

seq1  AATCTGCACCAGGCTTCCCAGATTTTTAAAACAAGGATTCCTGAGTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCACCAGGCTTCCCAGATTTTTAAAACAAGGATTCCTGAGTGATA  500

seq1  TGTGAAAATGGTTTGCTAATTTTTAAAAACTACGTGCTTAGCATGTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATGGTTTGCTAATTTTTAAAAACTACGTGCTTAGCATGTTAAG  550

seq1  TCTCTCAGCATCTGATATAAGTGAATTTTTCTTTAGGGCAGCAAGACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGCATCTGATATAAGTGAATTTTTCTTTAGGGCAGCAAGACTTG  600

seq1  GTTTGGGTTTAGCTGTAGTGCAGGGGGTAAAATTCAGGACCCTGCCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTTTAGCTGTAGTGCAGGGGGTAAAATTCAGGACCCTGCCCTTG  650

seq1  CACATGCAGGCAAGGACTGTACCACTGAGCTGCACCTCAGGGCTCACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCAGGCAAGGACTGTACCACTGAGCTGCACCTCAGGGCTCACAAC  700

seq1  CTTTCATTTAACAACAATTGAGTGATTCTTCACACTGAATCTGTGTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTAACAACAATTGAGTGATTCTTCACACTGAATCTGTGTTCTG  750

seq1  ATACACCACTGGCAAAGCTCGATGCTGCTAGAAATCATGTCCAATCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCACTGGCAAAGCTCGATGCTGCTAGAAATCATGTCCAATCAAAT  800

seq1  GACAGTTCCCCCCTCTCT-AAGGACTTTTCTCCTATAACAA-TTTGAGGA  848
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GACAGTTCCCCCCTCTCTAAAGGACTTTTCTCCTATAACAATTTTGAGGA  850

seq1  AAATAGCTCATGATTAGAGACATTGATGAGATAAGAGCAGAGTTACTGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTCATGATTAGAGACATTGATGAGATAAGAGCAGAGTTACTGAC  900

seq1  CACTCTCCAACCCCTGCCATCCTGATAGCACACAATCTCCTGAGATACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCAACCCCTGCCATCCTGATAGCACACAATCTCCTGAGATACCA  950

seq1  GGCCCAGAAAAAAACATAGGAAAACTCT-GGAAACTGCAAATT-GGTCTA  996
      ||||||| |||||||||||||||||||| |||||||||||||| ||||||
seq2  GGCCCAG-AAAAAACATAGGAAAACTCTGGGAAACTGCAAATTGGGTCTA  999

seq1  TGCAGACTGCAGAGAAATATGTGTTTCACTCTGGAGCCCCTA  1038
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTGCAGAGAAATATGTGTTTCACTCTGGAGCCCCTA  1041

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information