BAC Information

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BAC

Clone NameB6Ng01-223F24
Chromosome3 (Build37)
Map Location 98,418,851 - 98,419,951
singlet/doubletsinglet
Overlap genenone
Upstream geneFmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433
Downstream geneHsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223F24.bB6Ng01-223F24.g
ACCGA038135GA038136
length1,1011,222
definitionB6Ng01-223F24.b B6Ng01-223F24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagggcatgggactggatgcttagatcctagcttcatttctgtt
gctgtgacaaatgccctgaccaggagcagattcaggagaaaagaatttat
atgttctatgagcaatctcaggttacagtccatcattctggggaaactaa
ggcagggacttaagaggctggtcacaccacaaacacagcaaagagctgag
agcagcaaacgtatccatgggacccgcttgctacttctgtgccctagagc
tttcttctgtctcatgtctttcccatcttgattaagaatagatgtgcaca
tctcgtctactccatttgctccagaaggctttccaggaagctgaagctca
gtactcactgccttccatagcatagtgagtagggcctgggttctagctcc
tgactcatgcattactcacttctgtcctccagggagaatatgacatcctt
agatcttgatctttccctcaacactgtgcaccatcctgtctagagccccc
atgagatgccatgtgtctgtaataaaccataagtctgaatcagagatgga
caacaggcaggaagccccaggttcagcataacatacattttcttagtttt
catatcactactccaacttctcttctcaccctcctcctcctcttcttttt
ctgagacatgttttccctatgtagccctggttgtcttggaactcaccttg
tagaccaggtgagttataaagcgttctgtctctccctgtctttcaagtgt
tgggattaaaggcatgtgccaccactgcctgggtattttttttttttttc
atcagatcatgtttctttaaaatcaaagctcataccaagctttctgaaag
ttctgatttttgatgaggtataaacttaggactcatttcaatgggagaca
gatacatcaatttaacctccccacatcttattcaggatttcaacacccat
gtgaacagcagtactcactcactcactcactcactcactcactcactcac
tcactcactcattcatttccttgagatacactcactctactgcttaaagc
tcacactctggattgaagatcaagaatcagcccttggtatctgccactct
c
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtagagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
ggaaattggacatagtactaccggaggatccagcaatacctctcctggac
atatagatgtcccaaccggtaagaaggacacatgctccactatgttcata
gcagccttatttgtaatagccagaagctggaaagaacccagatgcccctc
aacagaggaatggatacagaaaatgtggtacatctacacaatggagtact
actcagctattaaaaagaatgaatttatgaaattcctagccaaatggatg
gacctggagggcatcatcctgagtgaggtaacacattcacaaaggaactc
acacaatatgtactcactgataagtggatattaccccaaaacctaggata
cccaagatataagatacaatttcctaaacacatgaaactcaagaaaaatc
aagactgaagtgtggacactatgcccctccttagaagtggggaacaaaac
acccttggaaggagttacagagacaaagtttggagctgagatgaaaggat
ggtccatgtatagacttccatatccagggatccaccccataatcagcatc
caaaacgctgacaccattgcatacactagcaagattttatcgaaaggacc
cagatgtagctgtctcttgtgaagactaatgccagggcctagcaaacaca
gaagtggatgctcaccagtcagcttaatggaatggatcaacagggctccc
caattgggaggaggcttagagaaagtagccaagagctaaagggatcttgc
caactccttataaggcagaaacaaccataatgaaactaaccagtaccctt
ggagctcttgaactctagctgccattatgttatcaaaggatggcctagtc
gggcatacactggaagagaaaggccattgacatgcaaactttaaatgctc
atgtacagtgtaatcgccagatgcctaaatactgtgcgcatctgtgtgcc
gagcactacgagatcgctgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98418851_98419951
seq2: B6Ng01-223F24.b_49_1149

seq1  GAATTCCAGGGCATGGGACTGGATGCTTAGATCCTAGCTTCATTTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCATGGGACTGGATGCTTAGATCCTAGCTTCATTTCTGTT  50

seq1  GCTGTGACAAATGCCCTGACCAGGAGCAGATTCAGGAGAAAAGAATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACAAATGCCCTGACCAGGAGCAGATTCAGGAGAAAAGAATTTAT  100

seq1  ATGTTCTATGAGCAATCTCAGGTTACAGTCCATCATTCTGGGGAAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTATGAGCAATCTCAGGTTACAGTCCATCATTCTGGGGAAACTAA  150

seq1  GGCAGGGACTTAAGAGGCTGGTCACACCACAAACACAGCAAAGAGCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGACTTAAGAGGCTGGTCACACCACAAACACAGCAAAGAGCTGAG  200

seq1  AGCAGCAAACGTATCCATGGGACCCGCTTGCTACTTCTGTGCCCTAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAACGTATCCATGGGACCCGCTTGCTACTTCTGTGCCCTAGAGC  250

seq1  TTTCTTCTGTCTCATGTCTTTCCCATCTTGATTAAGAATAGATGTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGTCTCATGTCTTTCCCATCTTGATTAAGAATAGATGTGCACA  300

seq1  TCTCGTCTACTCCATTTGCTCCAGAAGGCTTTCCAGGAAGCTGAAGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTCTACTCCATTTGCTCCAGAAGGCTTTCCAGGAAGCTGAAGCTCA  350

seq1  GTACTCACTGCCTTCCATAGCATAGTGAGTAGGGCCTGGGTTCTAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCACTGCCTTCCATAGCATAGTGAGTAGGGCCTGGGTTCTAGCTCC  400

seq1  TGACTCATGCATTACTCACTTCTGTCCTCCAGGGAGAATATGACATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATGCATTACTCACTTCTGTCCTCCAGGGAGAATATGACATCCTT  450

seq1  AGATCTTGATCTTTCCCTCAACACTGTGCACCATCCTGTCTAGAGCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGATCTTTCCCTCAACACTGTGCACCATCCTGTCTAGAGCCCCC  500

seq1  ATGAGATGCCATGTGTCTGTAATAAACCATAAGTCTGAATCAGAGATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGCCATGTGTCTGTAATAAACCATAAGTCTGAATCAGAGATGGA  550

seq1  CAACAGGCAGGAAGCCCCAGGTTCAGCATAACATACATTTTCTTAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGCAGGAAGCCCCAGGTTCAGCATAACATACATTTTCTTAGTTTT  600

seq1  CATATCACTACTCCAACTTCTCTTCTCACCCTCCTCCTCCTCTTCTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACTACTCCAACTTCTCTTCTCACCCTCCTCCTCCTCTTCTTTTT  650

seq1  CTGAGACATGTTTTCCCTATGTAGCCCTGGTTGTCTTGGAACTCACCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACATGTTTTCCCTATGTAGCCCTGGTTGTCTTGGAACTCACCTTG  700

seq1  TAGACCAGGTGAGTTATAAAGCGTTCTGTCTCTCCCTGTCTTTCAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGTGAGTTATAAAGCGTTCTGTCTCTCCCTGTCTTTCAAGTGT  750

seq1  TGGGATTAAAGGCATGTGCCACCACTGCCTGGGTA-TTTTTTTTTTTTTC  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGATTAAAGGCATGTGCCACCACTGCCTGGGTATTTTTTTTTTTTTTC  800

seq1  ATCAGATCATGTTTCTTTAAAATCAAAGCTCATACCAAGCTTTCTGAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCATGTTTCTTTAAAATCAAAGCTCATACCAAGCTTTCTGAAAG  850

seq1  TTCTGA-TTTTGATGAGGTATAAACTTAGGACTCATTTCAATGGGAGACA  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTTTGATGAGGTATAAACTTAGGACTCATTTCAATGGGAGACA  900

seq1  GATACATCAATTTAACCT-CCCACATCTTATTCAGGATTTC-ACACCCAT  946
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GATACATCAATTTAACCTCCCCACATCTTATTCAGGATTTCAACACCCAT  950

seq1  GTGAACAGCAGTACTCACTCACTCACTCACTCACTCACTCACTCACTCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAGCAGTACTCACTCACTCACTCACTCACTCACTCACTCACTCAC  1000

seq1  TCACTCACTCATTCATTTCCTTGAGATACACTCACTCTACTGCTTAAAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACTCATTCATTTCCTTGAGATACACTCACTCTACTGCTTAAAGC  1050

seq1  TCACACTCCTGGATTTGAAGATCAAAGATCAAGCCTTTGGTATCCTGCCA  1096
      ||||||| ||||| |||||||||||  ||| |||| ||||||| ||||||
seq2  TCACACT-CTGGA-TTGAAGATCAAGAATC-AGCCCTTGGTAT-CTGCCA  1096

seq1  CTCTC  1101
      |||||
seq2  CTCTC  1101