BAC Information

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BAC

Clone NameB6Ng01-223J09
Chromosome3 (Build37)
Map Location 43,172,107 - 43,173,293
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039204, LOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223J09.bB6Ng01-223J09.g
ACCGA038289GA038290
length1,179317
definitionB6Ng01-223J09.b B6Ng01-223J09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatggaagtcagtacaaaattgctgaatctctgtggaagacatc
tagctggctacaagtaacttcactttgtttgaacaacatactagggtact
catttttaacatagagacttcttcaaaagttaatacataacactccaata
ttagaatgcagtggaaacctagcaactttataaacaacagagaactcatt
ttcaggtagtgaacccattttcttctagcaaaattcatacatttttatct
actatctaaaatatattttcatgagagacatcaagaagaaggagtcatgt
aatcttgtgtccatattcctagaaaaacaatggtacaataagtatttatg
ttatagattgcgaactattcaaatgaccctgtggagcattcttctgtaac
taatgcattcttctgtttttaataaatgatattaatcatgcaagcgttct
tatgtgccaaatatacattaatataggctgcagtattcctccaagcatat
ttcttctctaagttattttagaaataaggccatttgaacaatttccaatt
tcaccatagtgtttaaagttacatgaaaacattggaaatgatatcaagaa
cattactgattttaaaggagctattgttaagttcattagttcttttatat
tacatcactgcagtatctaataaaagacctaaaatatattatgattttat
tctagctaaaatgcaaagtaacaggtgagttttaggcaagtacacttgtc
tgtgttctaataccttgagtattctgtaaagaatgtttcttcatatgcta
tgtatatactttataatttaaatatgcattcatttccacacccaaaattt
gtttcaaggatatttccaccttatttacatgcttaaatcttctaaacact
ttttaaaatttgcatcctatgaggcattaaacccccatctttgctgcttc
accatgcagcagctccagcatttctgaatttggtatttggctaatagctc
tattacctttcatgctgagtcaaagctttactccctcaagctttactttt
gcactgaaatttcatcatgtcagaaacccacctgtgcagtttgcttagga
ctagcatctcttgctgaggacgctactcattgaggaaagagagctacaga
agagagatggccgatacgtatttaaactc

tttgttcagctctgagcccaatcttttaagggggctatttgattttctgg
agtccaccctcttgagttctttatatatattggatattagtcccctatct
gatttaagataggtaaagatcctttcccaatctgttggtgatctttttgt
cttattgatggtttcttttgccttgcagaagctttgcagtttcatgaggt
cccatttgtcaatcctcgatcttaaagcacaagccattgctgttctattc
aggaatttatatatatatatatatatatatatatatatatatatatatat
atatatatttttatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_43172107_43173293
seq2: B6Ng01-223J09.b_44_1222

seq1  GAATTCCATGGAAGTCAGTACAAAATTGCTGAATCTCTGTGGAAGACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAAGTCAGTACAAAATTGCTGAATCTCTGTGGAAGACATC  50

seq1  TAGCTGGCTACAAGTAACTTCACTTTGTTTGAACAACATACTAGGGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGCTACAAGTAACTTCACTTTGTTTGAACAACATACTAGGGTACT  100

seq1  CATTTTTAACATAGAGACTTCTTCAAAAGTTAATACATAACACTCCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAACATAGAGACTTCTTCAAAAGTTAATACATAACACTCCAATA  150

seq1  TTAGAATGCAGTGGAAACCTAGCAACTTTATAAACAACAGAGAACTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGCAGTGGAAACCTAGCAACTTTATAAACAACAGAGAACTCATT  200

seq1  TTCAGGTAGTGAACCCATTTTCTTCTAGCAAAATTCATACATTTTTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTAGTGAACCCATTTTCTTCTAGCAAAATTCATACATTTTTATCT  250

seq1  ACTATCTAAAATATATTTTCATGAGAGACATCAAGAAGAAGGAGTCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTAAAATATATTTTCATGAGAGACATCAAGAAGAAGGAGTCATGT  300

seq1  AATCTTGTGTCCATATTCCTAGAAAAACAATGGTACAATAAGTATTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTGTCCATATTCCTAGAAAAACAATGGTACAATAAGTATTTATG  350

seq1  TTATAGATTGCGAACTATTCAAATGACCCTGTGGAGCATTCTTCTGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATTGCGAACTATTCAAATGACCCTGTGGAGCATTCTTCTGTAAC  400

seq1  TAATGCATTCTTCTGTTTTTAATAAATGATATTAATCATGCAAGCGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCATTCTTCTGTTTTTAATAAATGATATTAATCATGCAAGCGTTCT  450

seq1  TATGTGCCAAATATACATTAATATAGGCTGCAGTATTCCTCCAAGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCCAAATATACATTAATATAGGCTGCAGTATTCCTCCAAGCATAT  500

seq1  TTCTTCTCTAAGTTATTTTAGAAATAAGGCCATTTGAACAATTTCCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTAAGTTATTTTAGAAATAAGGCCATTTGAACAATTTCCAATT  550

seq1  TCACCATAGTGTTTAAAGTTACATGAAAACATTGGAAATGATATCAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATAGTGTTTAAAGTTACATGAAAACATTGGAAATGATATCAAGAA  600

seq1  CATTACTGATTTTAAAGGAGCTATTGTTAAGTTCATTAGTTCTTTTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGATTTTAAAGGAGCTATTGTTAAGTTCATTAGTTCTTTTATAT  650

seq1  TACATCACTGCAGTATCTAATAAAAGACCTAAAATATATTATGATTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCACTGCAGTATCTAATAAAAGACCTAAAATATATTATGATTTTAT  700

seq1  TCTAGCTAAAATGCAAAGTAACAGGTGAGTTTTAGGCAAGTACACTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAAAATGCAAAGTAACAGGTGAGTTTTAGGCAAGTACACTTGTC  750

seq1  TGTGTTCTAATACCTTGAGTATTCTGTAAAGAATGTTTCTTCATATGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTAATACCTTGAGTATTCTGTAAAGAATGTTTCTTCATATGCTA  800

seq1  TGTATATACTTTATAATTTAAATATGCATTCATTTCCACACCCAAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATACTTTATAATTTAAATATGCATTCATTTCCACACCCAAAATTT  850

seq1  GTTTCAAGGATATTTCCACCTTATTTACATGCTTAAATCTTCTAAACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGGATATTTCCACCTTATTTACATGCTTAAATCTTCTAAACACT  900

seq1  TTTTAAAATTTGCATCCTATGAGGCATTAAACCCCCATCTTTGCTGCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTTGCATCCTATGAGGCATTAAACCCCCATCTTTGCTGCTTC  950

seq1  ACCATGCAGCAGCTCCAGCATTTCTGAATTTGGTATTTGGCTAATAGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAGCAGCTCCAGCATTTCTGAATTTGGTATTTGGCTAATAGCTC  1000

seq1  TATTACCTTTCATGCTGAGTCCAAAGCTTTACCTCCCTCAAGCTTTACTT  1050
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  TATTACCTTTCATGCTGAGT-CAAAGCTTTA-CTCCCTCAAGCTTTACTT  1048

seq1  TTGCCAACTGGAAAATTTTCCATCATGTCAGGAAAACCCA-CTGTGCAGT  1099
      ||||  ||||  ||||||  |||||||||||  ||||||| |||||||||
seq2  TTGC--ACTG--AAATTT--CATCATGTCAG--AAACCCACCTGTGCAGT  1090

seq1  TTGCTTAGGGACTAGGCCCTCTCTTGCTGAGTGACAGCTATTCAAT-AGA  1148
      ||||||| |||||||  | |||||||||||| ||| |||| ||| | || 
seq2  TTGCTTA-GGACTAG--CATCTCTTGCTGAG-GAC-GCTACTCATTGAGG  1135

seq1  GAAAAGAGCCAC---AGAGAGAT-GCCGATACGTA-TTAAACTC  1187
       || ||||| ||   |||||||| ||||||||||| ||||||||
seq2  AAAGAGAGCTACAGAAGAGAGATGGCCGATACGTATTTAAACTC  1179


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