BAC Information

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BAC

Clone NameB6Ng01-225H02
Chromosome3 (Build37)
Map Location 144,891,313 - 145,004,584
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225H02.bB6Ng01-225H02.g
ACCGA039635GA039636
length1,1581,168
definitionB6Ng01-225H02.b B6Ng01-225H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,891,313 - 144,892,482)(145,003,419 - 145,004,584)
sequence
gaattctctattttccactctaattttctttaaaaccagtccgaaaaata
aaggtcattagttattctgagactgagtctcactatgtcacccaggccat
ccttgaggtcacatgctcatgtctccaagtccacactgctgggcttgcag
acttaccaaagccattcttcattaatagtttttaaagataatacaaaaga
catgaagatgagtgaaagctgtggagtctgctcgcctgagtaatagttcc
ataaagacacagaagaaggggggagggcaaatctgtgatgtttaaagcag
agatgctttcttctgtatcttttgggatgtctttatacttattattcctg
tagtacaattacaattttggcagttttagcctttgtgatgctctgtcttg
atttctactgtcatttttcatgaatctatattttaaggttaattataagc
ttatcagtaacttttttattataaaaatagctcaattcttgcaattgtat
ttgatactcaatacaatctcaagtctttatagcattcctccaggcaaaga
ttattaacatggcaatatgtgaatcctgtagtctctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttctttccttccttccttccttccttccttccttctttctttcttt
ctttctttctttctttctttctttctttctttctttcttttcttttcttg
aaatagattcttttctcatacaatatattcttgttatagttttcccttcc
tctccttctctcagttcctccccacctctcttcctctccagataaagcag
aatttctcaacattgatgaaaccaacattgtggtgaagataattcttgtg
ggtaattgatgattatcaatgtgtaggatgggttagcaatgtatctccag
aatttgtcttctgtctcctagaagtaaaactccctgagtgtaccttggta
aacaaagagaacctctttcgtttatttccagtgatctaccaatgccctct
actcctgactttgatgatgtagatctagttgtgccatgagaatggtaatg
tactatacctcacctgatgtactgctagcatcttgctgaatccaatcaca
gacctcta
gaattcacttggaattgatacactttgtattcttggcttcagatacattt
tgctccaagaaaactgatatagagattcgaaagacatcagagaggaaatc
tgctgcagaatggctgaaaaaaattagtaaaaaaaatatattattttttt
gcatcctctttcactgatgttttaaagattttatctacttacgcagctgt
ttacgtgtatgagtcagaagagggcagcagatctcctaggactagagtta
cagatggttgtgagccaccctgtgggtgctggaactaaaccctagtcctc
tggaaaaacacccagtgctcttagttactgaaccagctgtccacatactc
atcaatattcattcatccattcatctgtttcctcggggtttatgtgtctt
aagcgactcctaaatgaaggaaagttaaaagaagatgtgctgtgctgctc
ttatttaacaccatatgccaacagcggtagaacagtgggtggcattctag
agtccagtgacacggaacccacttccagcttactgcctataaagagagag
cagactgccttttgtctgccaccttctgaggcacacagaagcaccacctc
cagttaaatactgaaacctcagcactcctaaaaatctggagaggtcagga
gaaagaacagacccagggaaaagcaaacggaggatagaatttaaagtccc
tccctcttgttttagttttgttctcctgtcccttttcctgtcccctttga
ccaacaattattcctccctaagactgtttagacagcgcgtattttacctg
tgctttacatctggtaagtggatattattttacatccggagcgatgaaga
tatgtagaagtaatgaatggagatagtttaatggactgtgaatgaacact
gggcctttctgaggcttttacaacaaaaattcttatctacgtgagaacca
tctctaaaactttatatataaattattaccctattgatatcaactatgta
aggtattttatcatgtcctattcactgagcattaatacagacactagttt
cacgtctctgttcatctctttaaaaacctgttaaaacagaatattatgtt
cctggtgtgaatagatttggagaagagaatagaaatttcagtcactcagc
agctacgggagaccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144891313_144892482
seq2: B6Ng01-225H02.b_46_1203

seq1  GAATTCTCTATTTTCCACTCTAATTTTCTTTAAAACCAGTCCGAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTTTCCACTCTAATTTTCTTTAAAACCAGTCCGAAAAATA  50

seq1  AAGGTCATTAGTTATTCTGAGACTGAGTCTCACTATGTCACCCAGGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATTAGTTATTCTGAGACTGAGTCTCACTATGTCACCCAGGCCAT  100

seq1  CCTTGAGGTCACATGCTCATGTCTCCAAGTCCACACTGCTGGGCTTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGTCACATGCTCATGTCTCCAAGTCCACACTGCTGGGCTTGCAG  150

seq1  ACTTACCAAAGCCATTCTTCATTAATAGTTTTTAAAGATAATACAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCAAAGCCATTCTTCATTAATAGTTTTTAAAGATAATACAAAAGA  200

seq1  CATGAAGATGAGTGAAAGCTGTGGAGTCTGCTCGCCTGAGTAATAGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATGAGTGAAAGCTGTGGAGTCTGCTCGCCTGAGTAATAGTTCC  250

seq1  ATAAAGACACAGAAGAAGGGGGGAGGGCAAATCTGTGATGTTTAAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACACAGAAGAAGGGGGGAGGGCAAATCTGTGATGTTTAAAGCAG  300

seq1  AGATGCTTTCTTCTGTATCTTTTGGGATGTCTTTATACTTATTATTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTTCTTCTGTATCTTTTGGGATGTCTTTATACTTATTATTCCTG  350

seq1  TAGTACAATTACAATTTTGGCAGTTTTAGCCTTTGTGATGCTCTGTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAATTACAATTTTGGCAGTTTTAGCCTTTGTGATGCTCTGTCTTG  400

seq1  ATTTCTACTGTCATTTTTCATGAATCTATATTTTAAGGTTAATTATAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTGTCATTTTTCATGAATCTATATTTTAAGGTTAATTATAAGC  450

seq1  TTATCAGTAACTTTTTTATTATAAAAATAGCTCAATTCTTGCAATTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTAACTTTTTTATTATAAAAATAGCTCAATTCTTGCAATTGTAT  500

seq1  TTGATACTCAATACAATCTCAAGTCTTTATAGCATTCCTCCAGGCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTCAATACAATCTCAAGTCTTTATAGCATTCCTCCAGGCAAAGA  550

seq1  TTATTAACATGGCAATATGTGAATCCTGTAGTCTCTTTCTTTCTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACATGGCAATATGTGAATCCTGTAGTCTCTTTCTTTCTTTCTTT  600

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  650

seq1  TTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTT  700

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTTCTTG  750

seq1  AAATAGATTCTTTTCTCATACAATATATTCTTGTTATAGTTTTCCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTCTTTTCTCATACAATATATTCTTGTTATAGTTTTCCCTTCC  800

seq1  TCTCCTTCTCTCAGTTCCTCCCCACCTCTCTTCCTCTCCAGATAAAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCTCTCAGTTCCTCCCCACCTCTCTTCCTCTCCAGATAAAGCAG  850

seq1  AATTTCTCAACATTGATGAAACCAACATTGTGGTGAAGATAATTCTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCAACATTGATGAAACCAACATTGTGGTGAAGATAATTCTTGTG  900

seq1  GGTAATTGATGATTATCAATGTGTAGGAT-GGTTAGCAATGTATCTCCAG  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTAATTGATGATTATCAATGTGTAGGATGGGTTAGCAATGTATCTCCAG  950

seq1  AATTTGTCTTCTGTCTCCTAGAAGGTAAAACTCCCTGAGTGTACCTTGGT  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  AATTTGTCTTCTGTCTCCTAGAA-GTAAAACTCCCTGAGTGTACCTTGG-  998

seq1  TAAACAAAGAGAACCTCTTTCGGTTTATTTCCCAGTGATCTACCCATGCC  1049
      ||||||||||||||||||||| |||||||| ||||||||||||| |||||
seq2  TAAACAAAGAGAACCTCTTTC-GTTTATTT-CCAGTGATCTACCAATGCC  1046

seq1  CTCTACTTCCTGGCCTTTGATTGATGTAGATCTTAGTTTGTGCCATGAGA  1099
      |||||| |||| | |||||| ||||||||||| ||| |||||||||||||
seq2  CTCTAC-TCCT-GACTTTGA-TGATGTAGATC-TAG-TTGTGCCATGAGA  1091

seq1  TATGGGTATGTACTATACTTCACCTGATGTACTGCTAGCATCTTTTGTTT  1149
       ||||  ||||||||||| |||||||||||||||||||||||||     |
seq2  -ATGGTAATGTACTATACCTCACCTGATGTACTGCTAGCATCTT---GCT  1137

seq1  GAGTCACATCACAGACTTCTA  1170
      || ||  ||||||||| ||||
seq2  GAATCCAATCACAGACCTCTA  1158

seq1: chr3_145003419_145004584
seq2: B6Ng01-225H02.g_66_1233 (reverse)

seq1  CCATGGTCT-CCGT-GCTGCTGA-TGACTGAAATATTCTATCTCTTTTCC  47
      ||||||||| |||| |||||||| |||||||||| |||||| ||| ||| 
seq2  CCATGGTCTCCCGTAGCTGCTGAGTGACTGAAAT-TTCTAT-TCTCTTCT  48

seq1  TCAAATCTA-TCACA-CAGGAACAATAATA-TCTGTTTTACAGGGTTTTT  94
       |||||||| ||||| ||||||| |||||| |||||||||   |||||||
seq2  CCAAATCTATTCACACCAGGAAC-ATAATATTCTGTTTTAACAGGTTTTT  97

seq1  AAAAGAGATTGAACAGGAGACGTGAACTTAGTGTCTGTA-TAATGCTCAG  143
       ||||||| |||||| ||||||||||  ||||||||||| ||||||||||
seq2  -AAAGAGA-TGAACA-GAGACGTGAAACTAGTGTCTGTATTAATGCTCAG  144

seq1  TGAATAGGACATGAATAAAATACCTTACATAGTTGATATCAATAGGGTAA  193
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGACATG-ATAAAATACCTTACATAGTTGATATCAATAGGGTAA  193

seq1  TAATTTATATATAAAGTTTTAGAGATGGTTCTCACGTAGATAAGAATTTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATATATAAAGTTTTAGAGATGGTTCTCACGTAGATAAGAATTTT  243

seq1  TGTTGTAAAAGCCTCAGAA--GGCCAGTGTTCATTCACAGTCCATTAAAC  291
      |||||||||||||||||||  | |||||||||||||||||||||||||||
seq2  TGTTGTAAAAGCCTCAGAAAGGCCCAGTGTTCATTCACAGTCCATTAAAC  293

seq1  TATCTCCATTCATTACTTCTACATATCTTCATCGCTCCGGATGTAAAATA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCATTCATTACTTCTACATATCTTCATCGCTCCGGATGTAAAATA  343

seq1  ATATCCACTTACCAGATGTAAAGCACAGGTAAAATACGCGCTGTCTAAAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCACTTACCAGATGTAAAGCACAGGTAAAATACGCGCTGTCTAAAC  393

seq1  AGTCTTAGGGAGGAATAATTGTTGGTCAAAGGGGACAGGAAAAGGGACAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAGGGAGGAATAATTGTTGGTCAAAGGGGACAGGAAAAGGGACAG  443

seq1  GAGAACAAAACTAAAACAAGAGGGAGGGACTTTAAATTCTATCCTCCGTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAAACTAAAACAAGAGGGAGGGACTTTAAATTCTATCCTCCGTT  493

seq1  TGCTTTTCCCTGGGTCTGTTCTTTCTCCTGACCTCTCCAGATTTTTAGGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCCCTGGGTCTGTTCTTTCTCCTGACCTCTCCAGATTTTTAGGA  543

seq1  GTGCTGAGGTTTCAGTATTTAACTGGAGGTGGTGCTTCTGTGTGCCTCAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGGTTTCAGTATTTAACTGGAGGTGGTGCTTCTGTGTGCCTCAG  593

seq1  AAGGTGGCAGACAAAAGGCAGTCTGCTCTCTCTTTATAGGCAGTAAGCTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCAGACAAAAGGCAGTCTGCTCTCTCTTTATAGGCAGTAAGCTG  643

seq1  GAAGTGGGTTCCGTGTCACTGGACTCTAGAATGCCACCCACTGTTCTACC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGTTCCGTGTCACTGGACTCTAGAATGCCACCCACTGTTCTACC  693

seq1  GCTGTTGGCATATGGTGTTAAATAAGAGCAGCACAGCACATCTTCTTTTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGCATATGGTGTTAAATAAGAGCAGCACAGCACATCTTCTTTTA  743

seq1  ACTTTCCTTCATTTAGGAGTCGCTTAAGACACATAAACCCCGAGGAAACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTTCATTTAGGAGTCGCTTAAGACACATAAACCCCGAGGAAACA  793

seq1  GATGAATGGATGAATGAATATTGATGAGTATGTGGACAGCTGGTTCAGTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGGATGAATGAATATTGATGAGTATGTGGACAGCTGGTTCAGTA  843

seq1  ACTAAGAGCACTGGGTGTTTTTCCAGAGGACTAGGGTTTAGTTCCAGCAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGCACTGGGTGTTTTTCCAGAGGACTAGGGTTTAGTTCCAGCAC  893

seq1  CCACAGGGTGGCTCACAACCATCTGTAACTCTAGTCCTAGGAGATCTGCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGTGGCTCACAACCATCTGTAACTCTAGTCCTAGGAGATCTGCT  943

seq1  GCCCTCTTCTGACTCATACACGTAAACAGCTGCGTAAGTAGATAAAATCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTCTGACTCATACACGTAAACAGCTGCGTAAGTAGATAAAATCT  993

seq1  TTAAAACATCAGTGAAAGAGGATGCAAAAAAATAATATATTTTTTTTACT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATCAGTGAAAGAGGATGCAAAAAAATAATATATTTTTTTTACT  1043

seq1  AATTTTTTTCAGCCATTCTGCAGCAGATTTCCTCTCTGATGTCTTTCGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTCAGCCATTCTGCAGCAGATTTCCTCTCTGATGTCTTTCGAA  1093

seq1  TCTCTATATCAGTTTTCTTGGAGCAAAATGTATCTGAAGCCAAGAATACA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATATCAGTTTTCTTGGAGCAAAATGTATCTGAAGCCAAGAATACA  1143

seq1  AAGTGTATCAATTCCAAGTGAATTC  1166
      |||||||||||||||||||||||||
seq2  AAGTGTATCAATTCCAAGTGAATTC  1168