BAC Information

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BAC

Clone NameB6Ng01-228K08
Chromosome3 (Build37)
Map Location 67,673,524 - 67,807,467
singlet/doubletdoublet
Overlap geneEG208426
Upstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
Downstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228K08.bB6Ng01-228K08.g
ACCGA042008GA042009
length1,0851,100
definitionB6Ng01-228K08.b B6Ng01-228K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,806,402 - 67,807,467)(67,673,524 - 67,674,613)
sequence
gaattctgtcaccttatgaatcctctttctcactcaaggagattcacctg
ggtatatagagaaaaacattgtcatgaaaatgcgcgtgcgcgcatgcgcg
cgcgcgcacacacacacacacacacacacacacacacatacacacacaca
cacacacacacacagaggaagggagagaacaagtgtttctcctcagacac
ctccttaacaatacttaacaatgttctcagtgcgcaaatgacagacattt
tagacgtcttaggggagggtggggatggaataggcttttagacaaatgaa
tgggacttactgtgatgtttgggatcaagctgtgacagcaggacacaaac
taaaccaggaaacctaagagttagactacccatcgctcatcattgatgta
aaattgaattctcgtcacctccacttaagagtgacacccaactttgtcat
ttaaggcaggcatagtcaccctagagaccaccctctccttgactgcggtt
gacatgctcaagctcctgcctcaagtcctttcaggagacacacctaaact
gattgacttgtacaaagagagaacacccaagccaacctgctcagtgatgc
tgaggccttaccctctgagtaaagagggaaagttcacataagctacagat
gtccttttgtaagacattcaactcatttgtaagaataaactgccaataga
aggaggcttagctaatggaattttctcagaatgttagatgcaccaacagt
tagcaaatgcgggtcgaaaagcagttagcaatgtaagagtcaattaaaaa
atccattgtaccttatataaggaaaaaaagaagaatctgttacttgttct
gggctcagctgtgctcactgggctgaaaaggaaagctgagttgagggcag
cccccccctccccccccccacacacaccacattagaaagctccgcatagc
aatcttgcacaatttgtgctcagctggccacttagccccaaaacaaatgc
agtgattgggctttttactgttttgtccaacttgcaccaccatagccctc
tttacactctgtcagttaaggtgtggaacaaaaag
gaattcaactcatacataaaagctttcagcccactgttggaaaacaatgg
tctcatcaactcctccaaatcccctactgtactagccagtttggctaagt
ccctctcatcaggttaattagcaatgttggcaaaaaataaagggctatca
aaagaaattatttatcttttgcaacatgtgtatgaaagagcaaatttggc
attagaactcttggcagagtgcaaatgtcccatgtaattcaccacttgta
atttttgcatctttttgtatgatgcatggaatgtgtttttaatttagatt
ttatttttcacttctggaaaagtaattctcaaagccccattggaatgagt
tatgcctcacaacatcacctttttttttttttttttttttttttttggtt
tttcgagacagggtttctttgtgtagccctggctgtcctgaaactcactc
tgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctccc
gagtgctgggattaaaggcgtgcaccaccaccgcccggctttcacatcac
cttctaatcttactttttgtttttttttttgtttttttaattttatggac
atgaatctttggttgtggtatgtacacgtgtatctgtgcatgtgtagatc
agaggaagacccttctttcaattttaatgagtatatgctttagtatgccc
acttaaatgatttgaactgtggggctgatgggaaagaagcactgcaacaa
gcccaaccagccgacttgttcattcattcattcattcattcattcaatca
ttcagtacaaattaaagaggtcctaatgtgctggaaatttgaggcagtcc
catttctgggagtaagaatgatattagcataaattcctttttaagggtac
cgtggagataaggacaagaaccacacacagattaagacccttgcaatata
gcaggggtagcaatgataggcaatggtctggcattctatctcgatgaagg
gactgctggcaatacatgcatttcacacagagattccccagaacgcccag
taagtcatcttactggttttttcaccctcttaagctgacaaaatgaagca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_67806402_67807467
seq2: B6Ng01-228K08.b_46_1130 (reverse)

seq1  CTTTTTGGTCCACACCTTAACTGACAGAGTGT--AGGAGGCTAT-GTGGT  47
      ||||||| ||||||||||||||||||||||||  ||  |||||| |||||
seq2  CTTTTTGTTCCACACCTTAACTGACAGAGTGTAAAGAGGGCTATGGTGGT  50

seq1  GGCAAGCT-GAGCAAACAGT-AAAAGCCCAATCACTGCATTTGTTCTGGG  95
       ||||| | ||  ||||||| |||||||||||||||||||||||| ||||
seq2  -GCAAGTTGGACAAAACAGTAAAAAGCCCAATCACTGCATTTGTTTTGGG  99

seq1  GCTAAGTGG-CAGCTGAGCAC-AATTGTGC-AGATTGCTATGCGGAGC-T  141
      ||||||||| ||||||||||| |||||||| ||||||||||||||||| |
seq2  GCTAAGTGGCCAGCTGAGCACAAATTGTGCAAGATTGCTATGCGGAGCTT  149

seq1  TCTAGTGT-GTGTGTGTGGGGGGGGG--GGGGGGGGCTG-CCTC-ACTCA  186
      |||| ||| |||||||||||||||||  ||||||||||| |||| |||||
seq2  TCTAATGTGGTGTGTGTGGGGGGGGGGAGGGGGGGGCTGCCCTCAACTCA  199

seq1  GCTTTCC-TTTCAGCCCAGTGAGCACAGCTGAGCCCAG-ACAAGTAACAG  234
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTTCCTTTTCAGCCCAGTGAGCACAGCTGAGCCCAGAACAAGTAACAG  249

seq1  ATTCTTC-TTTTTTCCTTATATAAGGTACAATGGA-TTTTTAATTGACTC  282
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTCTTCTTTTTTTCCTTATATAAGGTACAATGGATTTTTTAATTGACTC  299

seq1  TTACATTGCTAACTGCTTTTCGACCCGCATTTGCTAACTGTTGGTGCATC  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGCTAACTGCTTTTCGACCCGCATTTGCTAACTGTTGGTGCATC  349

seq1  TAACATTCTGAG-AAATTCCATTAGCTAAGCCTCCTTCTATTGGCAGTTT  381
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAACATTCTGAGAAAATTCCATTAGCTAAGCCTCCTTCTATTGGCAGTTT  399

seq1  ATTCTTACAAATGAGTTGAATGTCTTAC-AAAGGACATCTGTAGCTTATG  430
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTCTTACAAATGAGTTGAATGTCTTACAAAAGGACATCTGTAGCTTATG  449

seq1  TGAACTTTCCCTCTTTACTCAGAGGGTAAGGCCTCAGCATCACTGAGCAG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCCCTCTTTACTCAGAGGGTAAGGCCTCAGCATCACTGAGCAG  499

seq1  GTTGGCTTGGGTGTTCTCTCTTTGTACAAGTCAATCAGTTTAGGTGTGTC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTTGGGTGTTCTCTCTTTGTACAAGTCAATCAGTTTAGGTGTGTC  549

seq1  TCCTGAAAGGACTTGAGGCAGGAGCTTGAGCATGTCAACCGCAGTCAAGG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAGGACTTGAGGCAGGAGCTTGAGCATGTCAACCGCAGTCAAGG  599

seq1  AGAGGGTGGTCTCTAGGGTGACTATGCCTGCCTTAAATGACAAAGTTGGG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGGTCTCTAGGGTGACTATGCCTGCCTTAAATGACAAAGTTGGG  649

seq1  TGTCACTCTTAAGTGGAGGTGACGAGAATTCAATTTTACATCAATGATGA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCTTAAGTGGAGGTGACGAGAATTCAATTTTACATCAATGATGA  699

seq1  GCGATGGGTAGTCTAACTCTTAGGTTTCCTGGTTTAGTTTGTGTCCTGCT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGGGTAGTCTAACTCTTAGGTTTCCTGGTTTAGTTTGTGTCCTGCT  749

seq1  GTCACAGCTTGATCCCAAACATCACAGTAAGTCCCATTCATTTGTCTAAA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCTTGATCCCAAACATCACAGTAAGTCCCATTCATTTGTCTAAA  799

seq1  AGCCTATTCCATCCCCACCCTCCCCTAAGACGTCTAAAATGTCTGTCATT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATTCCATCCCCACCCTCCCCTAAGACGTCTAAAATGTCTGTCATT  849

seq1  TGCGCACTGAGAACATTGTTAAGTATTGTTAAGGAGGTGTCTGAGGAGAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCACTGAGAACATTGTTAAGTATTGTTAAGGAGGTGTCTGAGGAGAA  899

seq1  ACACTTGTTCTCTCCCTTCCTCTGTGTGTGTGTGTGTGTGTGTGTGTATG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTTCTCTCCCTTCCTCTGTGTGTGTGTGTGTGTGTGTGTGTATG  949

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCATGCGCGCA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCATGCGCGCA  999

seq1  CGCGCATTTTCATGACAATGTTTTTCTCTATATACCCAGGTGAATCTCCT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCATTTTCATGACAATGTTTTTCTCTATATACCCAGGTGAATCTCCT  1049

seq1  TGAGTGAGAAAGAGGATTCATAAGGTGACAGAATTC  1066
      ||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGAAAGAGGATTCATAAGGTGACAGAATTC  1085

seq1: chr3_67673524_67674613
seq2: B6Ng01-228K08.g_66_1165

seq1  GAATTCAACTCATACATAAAAGCTTTCAGCCCACTGTTGGAAAACAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCATACATAAAAGCTTTCAGCCCACTGTTGGAAAACAATGG  50

seq1  TCTCATCAACTCCTCCAAATCCCCTACTGTACTAGCCAGTTTGGCTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCAACTCCTCCAAATCCCCTACTGTACTAGCCAGTTTGGCTAAGT  100

seq1  CCCTCTCATCAGGTTAATTAGCAATGTTGGCAAAAAATAAAGGGCTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCATCAGGTTAATTAGCAATGTTGGCAAAAAATAAAGGGCTATCA  150

seq1  AAAGAAATTATTTATCTTTTGCAACATGTGTATGAAAGAGCAAATTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTATTTATCTTTTGCAACATGTGTATGAAAGAGCAAATTTGGC  200

seq1  ATTAGAACTCTTGGCAGAGTGCAAATGTCCCATGTAATTCACCACTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACTCTTGGCAGAGTGCAAATGTCCCATGTAATTCACCACTTGTA  250

seq1  ATTTTTGCATCTTTTTGTATGATGCATGGAATGTGTTTTTAATTTAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCATCTTTTTGTATGATGCATGGAATGTGTTTTTAATTTAGATT  300

seq1  TTATTTTTCACTTCTGGAAAAGTAATTCTCAAAGCCCCATTGGAATGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCACTTCTGGAAAAGTAATTCTCAAAGCCCCATTGGAATGAGT  350

seq1  TATGCCTCACAACATCACCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCACAACATCACCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT  400

seq1  TTTCGAGACAGGGTTTCTTTGTGTAGCCCTGGCTGTCCTGAAACTCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGACAGGGTTTCTTTGTGTAGCCCTGGCTGTCCTGAAACTCACTC  450

seq1  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCC  500

seq1  GAGTGCTGGGATTAAAGGCGTGCACCACCACCGCCCGGCTTTCACATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGGCGTGCACCACCACCGCCCGGCTTTCACATCAC  550

seq1  CTTCTAATCTTACTTTTTGTTTTTTTTTTTGTTTTTTTAATTTTATGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATCTTACTTTTTGTTTTTTTTTTTGTTTTTTTAATTTTATGGAC  600

seq1  ATGAATCTTTGGTTGTGGTATGTACACGTGTATCTGTGCATGTGTAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTTTGGTTGTGGTATGTACACGTGTATCTGTGCATGTGTAGATC  650

seq1  AGAGGAGGACCCTTCTTTCAATTTTAATGAGTATATGCTTTAGTATGCCC  700
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGACCCTTCTTTCAATTTTAATGAGTATATGCTTTAGTATGCCC  700

seq1  ACTTAAATGATTTGAACTGT-GGGCTGATGGGAAAGAAGCACTGCAGCAG  749
      |||||||||||||||||||| ||||||||||||||||||||||||| || 
seq2  ACTTAAATGATTTGAACTGTGGGGCTGATGGGAAAGAAGCACTGCAACAA  750

seq1  GCCCAACCAGCCGACTTGTTCATTCATTCATTCATTCATTCATTCATTCA  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCCAACCAGCCGACTTGTTCATTCATTCATTCATTCATTCATTCAATCA  800

seq1  TTCAGTACAAATTAATGAGGTCCTAATGTGCTGGAAATTAGAGGCAGTCA  849
      ||||||||||||||| ||||||||||||||||||||||| ||||||||| 
seq2  TTCAGTACAAATTAAAGAGGTCCTAATGTGCTGGAAATTTGAGGCAGTCC  850

seq1  CATTTCTGGAAGTAAGAGTGATTATAGCATAAA-TCCCTTTTAAGTGTAC  898
      ||||||||| ||||||| ||||  ||||||||| ||| ||||||| ||||
seq2  CATTTCTGGGAGTAAGAATGATATTAGCATAAATTCCTTTTTAAGGGTAC  900

seq1  CGT-GAGAT-AGGACAAGACCAACACACAGATAAAGA-CCTTGCAATATA  945
      ||| ||||| ||||||||| | |||||||||| |||| ||||||||||||
seq2  CGTGGAGATAAGGACAAGAACCACACACAGATTAAGACCCTTGCAATATA  950

seq1  GCA-GGGTAGCAGTGATAGGCAAT-GTCAGGCATTC-ATCTCGATG-AGG  991
      ||| |||||||| ||||||||||| ||| ||||||| ||||||||| |||
seq2  GCAGGGGTAGCAATGATAGGCAATGGTCTGGCATTCTATCTCGATGAAGG  1000

seq1  GACTGCT-GCAATCACATGCATT---CACACAGAATCCCCAGACACGCCC  1037
      ||||||| ||||| |||||||||   |||| ||| |||||||| ||||||
seq2  GACTGCTGGCAAT-ACATGCATTTCACACAGAGATTCCCCAGA-ACGCCC  1048

seq1  AGTAAGTCATC-TACT-GTTTTTCAACCCTCTTTAAAGCTGAACAAAATG  1085
      ||||||||||| |||| ||||||  ||||||||  |||||| ||||||||
seq2  AGTAAGTCATCTTACTGGTTTTTTCACCCTCTT--AAGCTG-ACAAAATG  1095

seq1  AAGCA  1090
      |||||
seq2  AAGCA  1100