BAC Information

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BAC

Clone NameB6Ng01-229E17
Chromosome3 (Build37)
Map Location 17,537,910 - 17,674,028
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229E17.bB6Ng01-229E17.g
ACCGA042483GA042484
length9381,162
definitionB6Ng01-229E17.b B6Ng01-229E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,537,910 - 17,538,847)(17,672,867 - 17,674,028)
sequence
gaattcaagacagggaaaggttagaaggcagaaaagtctggacaaggact
ccaaaggatcatagaaaattaggagaaatactaatcagggagccatgtgt
aacgattttaaaaggaattgggatacaattatacagtatgccaatatcaa
atataaatcttgagcagaatttatagaattttctacaaacaaggcatgag
agacatttctgaaggaattttaatggcagaataaattcaaaaagcatccc
acacattgaagagtgaaaacaacatgaatatataaaaataatagaaggcc
agtatctcagaaggtgcaagcaagcaaccaatcgatatacattacaattt
catcagtaacatgggctacaaagttaaattctggtttcaatagcaaatat
tacaggagcctacaaatgtttaagagagatttagcaagaacaaagaaagc
ataaagtataaagtttagaaaaaattttaataggtgagagatttgtctgt
gtgtgtgtgtttgtgtgtgtgtttgttatacttatttcaaatacacgtgt
ctcaaaatgaataatttttactcccagtggatttccttcaggtagcatct
atcatctaccaatgtacaacacccacatctagtttatcaagaaatgattg
tggatactgcctttaatatcacgaagaactaacctgtgcttgagttaggg
aaaagctgatagaaacttaggaggaggggggccagaccagcagtttcaac
tgacctggacccccgagatctcttgaggactgaaccaccaaccaggcagc
atacaccagcttgtgtgaagaccctggcacatataaagcagaggactgcc
tgttctggacttagggaagatgaacttaaccctcccttaagagacttgag
gccccagggactggggaggagtgttaaggtggagatgg

gaattcataaggtactttccatttgggcctgccattttcatgtgctaaat
ccacattctaggcagaatgatggtaacactactgtttatagagacagagc
aacgtttagggttggcaaatacagataatctcacatcgtagttcatttta
gattttcccctctgttagaaaaccattctacttgtctttccatgtgtaca
tgggcgttaggaaaggtagtaagtaagaaagcagatcacattttaaggaa
ggtgttgagtttgaaggccaatgtgatgaaacttattttaaattcttgtt
attttttccaaatggattttctgtggatgcatcttgaaagctgttatata
agaaatagtttttctttgataaaataggtttcgtttttctactgcctatc
atgtgtcatataattctgaacttttgatacaaattcttgatggtctggat
aaataatttaaccaaaatcatgaaactagcatttaactgaaaaataaaaa
acatttttttatgtattctaaagccgctgattttactataagaaggaccc
aggaagaatagctgaaatgtcagtgtgtggcttaaaaatatctttaaatt
cttcagggaaacagctggggaatagttcttacaggtacaatttacattgt
gaattccagagtagggctacagtgaaaatagaaggttgttgtggaagatg
cctggggagagaataacgccggggaaggatgccaactcctctttaatttt
agatatgaagaaaccttgtaagaataataaaattgaagtttaaaggaaga
aaatgaaggtcaacctatatcctaagaatacaagagaaactaggaagtga
aagatcttagaaacagccttcaaagcagatccaaaagcaacagccaagct
attaaggaaacaaggcagaaaaagtactttctgatgcttttattcagaca
cacatagctcaaacaagagagcatttgctgagtacagtttctaaaggagc
tctgtagccagtcttgatatgaagcttatagattgtgctcctgatgctct
gctcctgtactcagagtagaagatgcaaggcatacagtgagtcgattctt
agtcttttgctagcagaagtcaggtgacaagacaggttcaagggcctcta
ttgatagtctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17537910_17538847
seq2: B6Ng01-229E17.b_33_970

seq1  GAATTCAAGACAGGGAAAGGTTAGAAGGCAGAAAAGTCTGGACAAGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACAGGGAAAGGTTAGAAGGCAGAAAAGTCTGGACAAGGACT  50

seq1  CCAAAGGATCATAGAAAATTAGGAGAAATACTAATCAGGGAGCCATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGATCATAGAAAATTAGGAGAAATACTAATCAGGGAGCCATGTGT  100

seq1  AACGATTTTAAAAGGAATTGGGATACAATTATACAGTATGCCAATATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATTTTAAAAGGAATTGGGATACAATTATACAGTATGCCAATATCAA  150

seq1  ATATAAATCTTGAGCAGAATTTATAGAATTTTCTACAAACAAGGCATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATCTTGAGCAGAATTTATAGAATTTTCTACAAACAAGGCATGAG  200

seq1  AGACATTTCTGAAGGAATTTTAATGGCAGAATAAATTCAAAAAGCATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTCTGAAGGAATTTTAATGGCAGAATAAATTCAAAAAGCATCCC  250

seq1  ACACATTGAAGAGTGAAAACAACATGAATATATAAAAATAATAGAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGAAGAGTGAAAACAACATGAATATATAAAAATAATAGAAGGCC  300

seq1  AGTATCTCAGAAGGTGCAAGCAAGCAACCAATCGATATACATTACAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCAGAAGGTGCAAGCAAGCAACCAATCGATATACATTACAATTT  350

seq1  CATCAGTAACATGGGCTACAAAGTTAAATTCTGGTTTCAATAGCAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAACATGGGCTACAAAGTTAAATTCTGGTTTCAATAGCAAATAT  400

seq1  TACAGGAGCCTACAAATGTTTAAGAGAGATTTAGCAAGAACAAAGAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGCCTACAAATGTTTAAGAGAGATTTAGCAAGAACAAAGAAAGC  450

seq1  ATAAAGTATAAAGTTTAGAAAAAATTTTAATAGGTGAGAGATTTGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATAAAGTTTAGAAAAAATTTTAATAGGTGAGAGATTTGTCTGT  500

seq1  GTGTGTGTGTTTGTGTGTGTGTTTGTTATACTTATTTCAAATACACGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTTTGTGTGTGTGTTTGTTATACTTATTTCAAATACACGTGT  550

seq1  CTCAAAATGAATAATTTTTACTCCCAGTGGATTTCCTTCAGGTAGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATGAATAATTTTTACTCCCAGTGGATTTCCTTCAGGTAGCATCT  600

seq1  ATCATCTACCAATGTACAACACCCACATCTAGTTTATCAAGAAATGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTACCAATGTACAACACCCACATCTAGTTTATCAAGAAATGATTG  650

seq1  TGGATACTGCCTTTAATATCACGAAGAACTAACCTGTGCTTGAGTTAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTGCCTTTAATATCACGAAGAACTAACCTGTGCTTGAGTTAGGG  700

seq1  AAAAGCTGATAGAAACTTAGGAGGAGGGGGGCCAGACCAGCAGTTTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGATAGAAACTTAGGAGGAGGGGGGCCAGACCAGCAGTTTCAAC  750

seq1  TGACCTGGACCCCCGAGATCTCTTGAGGACTGAACCACCAACCAGGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGACCCCCGAGATCTCTTGAGGACTGAACCACCAACCAGGCAGC  800

seq1  ATACACCAGCTTGTGTGAAGACCCTGGCACATATAAAGCAGAGGACTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCAGCTTGTGTGAAGACCCTGGCACATATAAAGCAGAGGACTGCC  850

seq1  TGTTCTGGACTTAGGGAAGATGAACTTAACCCTCCCTTAAGAGACTTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGACTTAGGGAAGATGAACTTAACCCTCCCTTAAGAGACTTGAG  900

seq1  GCCCCAGGGACTGGGGAGGAGTGGTAAGGTGGAGATGG  938
      ||||||||||||||||||||||| ||||||||||||||
seq2  GCCCCAGGGACTGGGGAGGAGTGTTAAGGTGGAGATGG  938


seq1: chr3_17672867_17674028
seq2: B6Ng01-229E17.g_64_1225 (reverse)

seq1  CCAGACTATCAATAGAG--CCCTGAA-CTGTCTTGTCCACCTGACTTCTG  47
      |||||||||||||||||  || |||| ||||||||| |||||||||||||
seq2  CCAGACTATCAATAGAGGCCCTTGAACCTGTCTTGT-CACCTGACTTCTG  49

seq1  CTAGC--AAGACCTAG-ATCGAACTTCACTGTATGCCTTTGCATCTTCTT  94
      |||||  |||||  || |||||   |||||||||||| |||||||||| |
seq2  CTAGCAAAAGACTAAGAATCGA--CTCACTGTATGCC-TTGCATCTTC-T  95

seq1  ACTCTGAGTACAGGGAGCAGGAGCATCAGGAGCACAATCTATAAGCTTCA  144
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  ACTCTGAGTACA-GGAGCA-GAGCATCAGGAGCACAATCTATAAGCTTCA  143

seq1  TATCAAGACTGGCCTACAGAGCTCCTTTAGAAACTGTACTCAGCAAATGC  194
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATCAAGACTGG-CTACAGAGCTCCTTTAGAAACTGTACTCAGCAAATGC  192

seq1  TCTCTTGTTTGAGCTATGTGTGTCTG-ATAAAAGCATCAG-AAGTACTTT  242
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TCTCTTGTTTGAGCTATGTGTGTCTGAATAAAAGCATCAGAAAGTACTTT  242

seq1  GTCTGCCTTGTTTCCTTAATAGCTTGGCTGTTGCTTTTGGATCTGCTTTG  292
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTTGTTTCCTTAATAGCTTGGCTGTTGCTTTTGGATCTGCTTTG  292

seq1  AAGGCTGTTTCTAAGATCTTTCACTTCCTAGTTTCTCTTGTATTCTTAGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTTTCTAAGATCTTTCACTTCCTAGTTTCTCTTGTATTCTTAGG  342

seq1  ATATAGGTTGACCTTCATTTTCTTCCTTTAAACTTCAATTTTATTATTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGTTGACCTTCATTTTCTTCCTTTAAACTTCAATTTTATTATTCT  392

seq1  TACAAGGTTTCTTCATATCTAAAATTAAAGAGGAGTTGGCATCCTTCCCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTTTCTTCATATCTAAAATTAAAGAGGAGTTGGCATCCTTCCCC  442

seq1  GGCGTTATTCTCTCCCCAGGCATCTTCCACAACAACCTTCTATTTTCACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTATTCTCTCCCCAGGCATCTTCCACAACAACCTTCTATTTTCACT  492

seq1  GTAGCCCTACTCTGGAATTCACAATGTAAATTGTACCTGTAAGAACTATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTACTCTGGAATTCACAATGTAAATTGTACCTGTAAGAACTATT  542

seq1  CCCCAGCTGTTTCCCTGAAGAATTTAAAGATATTTTTAAGCCACACACTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTGTTTCCCTGAAGAATTTAAAGATATTTTTAAGCCACACACTG  592

seq1  ACATTTCAGCTATTCTTCCTGGGTCCTTCTTATAGTAAAATCAGCGGCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAGCTATTCTTCCTGGGTCCTTCTTATAGTAAAATCAGCGGCTT  642

seq1  TAGAATACATAAAAAAATGTTTTTTATTTTTCAGTTAAATGCTAGTTTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACATAAAAAAATGTTTTTTATTTTTCAGTTAAATGCTAGTTTCA  692

seq1  TGATTTTGGTTAAATTATTTATCCAGACCATCAAGAATTTGTATCAAAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGGTTAAATTATTTATCCAGACCATCAAGAATTTGTATCAAAAG  742

seq1  TTCAGAATTATATGACACATGATAGGCAGTAGAAAAACGAAACCTATTTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTATATGACACATGATAGGCAGTAGAAAAACGAAACCTATTTT  792

seq1  ATCAAAGAAAAACTATTTCTTATATAACAGCTTTCAAGATGCATCCACAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAAAAACTATTTCTTATATAACAGCTTTCAAGATGCATCCACAG  842

seq1  AAAATCCATTTGGAAAAAATAACAAGAATTTAAAATAAGTTTCATCACAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATTTGGAAAAAATAACAAGAATTTAAAATAAGTTTCATCACAT  892

seq1  TGGCCTTCAAACTCAACACCTTCCTTAAAATGTGATCTGCTTTCTTACTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCAAACTCAACACCTTCCTTAAAATGTGATCTGCTTTCTTACTT  942

seq1  ACTACCTTTCCTAACGCCCATGTACACATGGAAAGACAAGTAGAATGGTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTTCCTAACGCCCATGTACACATGGAAAGACAAGTAGAATGGTT  992

seq1  TTCTAACAGAGGGGAAAATCTAAAATGAACTACGATGTGAGATTATCTGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAGAGGGGAAAATCTAAAATGAACTACGATGTGAGATTATCTGT  1042

seq1  ATTTGCCAACCCTAAACGTTGCTCTGTCTCTATAAACAGTAGTGTTACCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCAACCCTAAACGTTGCTCTGTCTCTATAAACAGTAGTGTTACCA  1092

seq1  TCATTCTGCCTAGAATGTGGATTTAGCACATGAAAATGGCAGGCCCAAAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTGCCTAGAATGTGGATTTAGCACATGAAAATGGCAGGCCCAAAT  1142

seq1  GGAAAGTACCTTATGAATTC  1162
      ||||||||||||||||||||
seq2  GGAAAGTACCTTATGAATTC  1162


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