BAC Information

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BAC

Clone NameB6Ng01-229I16
Chromosome3 (Build37)
Map Location 78,977,561 - 78,978,564
singlet/doubletsinglet
Overlap geneRapgef2
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
Downstream geneLOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229I16.bB6Ng01-229I16.g
ACCGA042654GA042655
length9951,210
definitionB6Ng01-229I16.b B6Ng01-229I16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctttaagtgagaggacattagagacctgctgacgcctttgtctc
ataatcgtgtgatttaggatacatgacgataaggcttcatatggaaatgt
aagaaagacgttagcaacataattattttagtaaagaattcaagcaaaac
cgtctgtggtgcttctttcttacggcataaaaataatctaggagagggta
ttagacattggtttaaggttaccaaagcaaaggcgggtgggtacagtgcc
agccctcaccagcctccttcaggactgctctgtgtcctcatctgtcttct
tgctcagggaggaaaatctcataaagtaaatgatggcacagccgtggtga
tagtgaagctctcttgatcacatttggttaaattttggtaggtaactcca
ggtcaagtttttagaggcaattgcagtttttccccaagatgctgcagagg
aattttgtcagcagtaagaacttcctctctgaacatagtaaaaaaaaaat
tggggacaaatctcataacatgagaaaataagatagcggtggtaaaatgt
aggattatgaaaatcatggacaagctgggcatggtggcgcacgcctttaa
tcccagcactctggaggcagagtcaggtagatttttgagtttgaggctag
cctggtctacaaagtgagttccaggacagccagggctacacagagaaacc
ctgtctcaaaaaaaaaaaaaaaaaaaaaaaccaaaacaaaaaaacaacga
aaagaaaatcatgggcagatcattggactttccaacactttaagttgaga
tctttttacccctgttaattctgttttcatgggatttttttttttttctt
gtgaaggttcctggagggttcatactttgacagtattacaggaaatgtga
gcacagcctccggtgtgagcattcttgaaggcatactgaggacttggctc
acttcccttgtccctgtcatgtgctccactagacctttagatgtt
gaattccatgatcatgggcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctgggactcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccatgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattaagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcagctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtta
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgaataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcacgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaggggttgtaatgctgcagctgtc
cacttctgggtggtgcctgcataacgtgcagagccatcagtaaaccaggc
tctagtcttctctcttcggtcagttgatcatagggaacacccatgaggct
tataggcgcatgcttggcagcagatggcattgtacagagtagaaccatag
gcatttgagcacttcttcatgtaacttgcttgtgctcagactgctctggc
cgatcacgtatattacacttcattgaataataagactgctgctggtggcg
cggtccacttttattgactttgcaggtctgaatgtacagctcatgtatgg
gtagtccaggtcgcaatatgagttaacctattgtgggtggtccctcatta
tgtgtatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78977561_78978564
seq2: B6Ng01-229I16.b_46_1040 (reverse)

seq1  AACATCTAAAAGTTCTAGT-GAGCACATGAACAGGGAACAAGGGAAGTGA  49
      ||||||| |||| |||||| ||||||||| |||||| |||||||||||||
seq2  AACATCT-AAAGGTCTAGTGGAGCACATG-ACAGGG-ACAAGGGAAGTGA  47

seq1  GCCCAGTCCTCAGTATGGCCTTCAGAATTGCTCACA-CGGAGGCTGTGCT  98
      ||| |||||||||||| |||||||  | |||||||| |||||||||||||
seq2  GCCAAGTCCTCAGTAT-GCCTTCAAGAATGCTCACACCGGAGGCTGTGCT  96

seq1  CACATTTCCTGTAATACTGTCAAAGTATGAACCCT-CAGGAA-CTTCACA  146
      ||||||||||||||||||||||||||||||||||| |||||| |||||| 
seq2  CACATTTCCTGTAATACTGTCAAAGTATGAACCCTCCAGGAACCTTCAC-  145

seq1  AAAAAAAAAAAAAAAAAAAAATCCCATGAAAACAGAATTAACAGGGGTAA  196
           || ||||||||||||||||||||||||||||||||||||||||||
seq2  -----AAGAAAAAAAAAAAAATCCCATGAAAACAGAATTAACAGGGGTAA  190

seq1  AAAGATCTCAACTTAAAGTGTTGGAAAGTCCAATGATCTGCCCATGATTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTCAACTTAAAGTGTTGGAAAGTCCAATGATCTGCCCATGATTT  240

seq1  TCTTTTCGTTGTTTTTTTGTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTT  296
      ||||||||||||||||||||||| |   ||||||||||||||||||||||
seq2  TCTTTTCGTTGTTTTTTTGTTTTGG---TTTTTTTTTTTTTTTTTTTTTT  287

seq1  TGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGT  337

seq1  AGACCAGGCTAGCCTCAAACTCAAAAATCTACCTGACTCTGCCTCCAGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTAGCCTCAAACTCAAAAATCTACCTGACTCTGCCTCCAGAG  387

seq1  TGCTGGGATTAAAGGCGTGCGCCACCATGCCCAGCTTGTCCATGATTTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCGTGCGCCACCATGCCCAGCTTGTCCATGATTTTC  437

seq1  ATAATCCTACATTTTACCACCGCTATCTTATTTTCTCATGTTATGAGATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTACATTTTACCACCGCTATCTTATTTTCTCATGTTATGAGATT  487

seq1  TGTCCCCAATTTTTTTTTTACTATGTTCAGAGAGGAAGTTCTTACTGCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAATTTTTTTTTTACTATGTTCAGAGAGGAAGTTCTTACTGCTG  537

seq1  ACAAAATTCCTCTGCAGCATCTTGGGGAAAAACTGCAATTGCCTCTAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTCCTCTGCAGCATCTTGGGGAAAAACTGCAATTGCCTCTAAAA  587

seq1  ACTTGACCTGGAGTTACCTACCAAAATTTAACCAAATGTGATCAAGAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACCTGGAGTTACCTACCAAAATTTAACCAAATGTGATCAAGAGAG  637

seq1  CTTCACTATCACCACGGCTGTGCCATCATTTACTTTATGAGATTTTCCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTATCACCACGGCTGTGCCATCATTTACTTTATGAGATTTTCCTC  687

seq1  CCTGAGCAAGAAGACAGATGAGGACACAGAGCAGTCCTGAAGGAGGCTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCAAGAAGACAGATGAGGACACAGAGCAGTCCTGAAGGAGGCTGG  737

seq1  TGAGGGCTGGCACTGTACCCACCCGCCTTTGCTTTGGTAACCTTAAACCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTGGCACTGTACCCACCCGCCTTTGCTTTGGTAACCTTAAACCA  787

seq1  ATGTCTAATACCCTCTCCTAGATTATTTTTATGCCGTAAGAAAGAAGCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAATACCCTCTCCTAGATTATTTTTATGCCGTAAGAAAGAAGCAC  837

seq1  CACAGACGGTTTTGCTTGAATTCTTTACTAAAATAATTATGTTGCTAACG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACGGTTTTGCTTGAATTCTTTACTAAAATAATTATGTTGCTAACG  887

seq1  TCTTTCTTACATTTCCATATGAAGCCTTATCGTCATGTATCCTAAATCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTACATTTCCATATGAAGCCTTATCGTCATGTATCCTAAATCAC  937

seq1  ACGATTATGAGACAAAGGCGTCAGCAGGTCTCTAATGTCCTCTCACTTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTATGAGACAAAGGCGTCAGCAGGTCTCTAATGTCCTCTCACTTAA  987

seq1  AGGAATTC  1004
      ||||||||
seq2  AGGAATTC  995