BAC Information

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BAC

Clone NameB6Ng01-229M16
Chromosome3 (Build37)
Map Location 102,678,404 - 102,679,579
singlet/doubletsinglet
Overlap geneSycp1
Upstream geneSlc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb, Tspan2, Tshb, LOC668425
Downstream geneLOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229M16.bB6Ng01-229M16.g
ACCGA042828GA042829
length1,1961,169
definitionB6Ng01-229M16.b B6Ng01-229M16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgcctgcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgtggtcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagggacttgaagtttttatcatac
agatctttcacttccttcgttagagtcacgccgagatatttttatattat
tttgtggctattgaagaagggtgtgttccctaatttctttctcagcctgt
ttattctttgtgtagaagaaggccatgacctgttgagttaaattatatat
ccagcctacttcaccgagctgtttatcaggtttaggagtctcttttggaa
atttaggtcactattatacctatcattatcatcttggcaaagtgatattg
gacgtcctcttttccattgtatcccatgggatactctctttgtagt
gaattcaatatctttcttttatattcagagatccagtttgaacagcacca
ttatatagaagttgaacattttttatttattatttgattctcaaaatact
caatattattaatgtttgatatataaaatgcatttaagtaataaaacatt
aagaaaaatgctgtcttcttcattactcattattctctcattctcatttt
tgagattctaatgttattaaaattggaagagaagcatatgatatcctacc
tccacagaattccaattcctcttcatactaagccacttttcaatatgtta
cttggtggggttatttcattagaatacatgcaaaactgaattaaactgta
ttagttcagctctcttattctcttattctcttccctgtcttccttctccg
tcccttctttctccatttctctccccactgtctttccatgtagtattcat
ggccggccccgccccgcccccttctgcctttctctgcctctactcctttc
aactctcccatcccctaaataaactctattccacactttttttaaaaagt
atattagacaatggaacatcttaagtaccataagagcagcacagatttct
aagaagccctaaacctgctctaatacccattagagtaaaagaactctcac
acaaacaaaaatatagtctccttcattagcaccaaatattgttaaatatt
tttcttataatactcacatatggccacagtcagctaatattctggatata
actgggattacagggatgtaccactgtttctggctacatagtttatctaa
aattttgcacgtccaaagctaaagactgagaataatttcaaaataaaatt
aagaaaaaacagcttcataaaaatggaaagcatttctctgatttctcaca
ctgatttgacacattggtagcaggcttggtaacatatgtctttaatacta
gcactaaggaagcagagtcagcccatctctctaggttcaaagcagcctgg
ttcactattcaagaatagtcaagaataccactgtaagactctgtctcaat
aaataaatggaaataaacaaaaacaactgcaacaggtaaactattcttta
acatggaagttttatttattaaaactattgcatgtatttgtcgaatgcac
ttgaatcctcattatgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_102678404_102679579
seq2: B6Ng01-229M16.g_68_1236

seq1  GAATTCAATATCTTTCTTTTATATTCAGAGATCCAGTTTGAACAGCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCTTTCTTTTATATTCAGAGATCCAGTTTGAACAGCACCA  50

seq1  TTATATAGAAGTTGAACATTTTTTATTTATTATTTGATTCTCAAAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGAAGTTGAACATTTTTTATTTATTATTTGATTCTCAAAATACT  100

seq1  CAATATTATTAATGTTTGATATATAAAATGCATTTAAGTAATAAAACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTATTAATGTTTGATATATAAAATGCATTTAAGTAATAAAACATT  150

seq1  AAGAAAAATGCTGTCTTCTTCATTACTCATTATTCTCTCATTCTCATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATGCTGTCTTCTTCATTACTCATTATTCTCTCATTCTCATTTT  200

seq1  TGAGATTCTAATGTTATTAAAATTGGAAGAGAAGCATATGATATCCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCTAATGTTATTAAAATTGGAAGAGAAGCATATGATATCCTACC  250

seq1  TCCACAGAATTCCAATTCCTCTTCATACTAAGCCACTTTTCAATATGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAATTCCAATTCCTCTTCATACTAAGCCACTTTTCAATATGTTA  300

seq1  CTTGGTGGGGTTATTTCATTAGAATACATGCAAAACTGAATTAAACTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGGGTTATTTCATTAGAATACATGCAAAACTGAATTAAACTGTA  350

seq1  TTAGTTCAGCTCTCTTATTCTCTTATTCTCTTCCCTGTCTTCCTTCTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCAGCTCTCTTATTCTCTTATTCTCTTCCCTGTCTTCCTTCTCCG  400

seq1  TCCCTTCTTTCTCCATTTCTCTCCCCACTGTCTTTCCATGTAGTATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTTCTCCATTTCTCTCCCCACTGTCTTTCCATGTAGTATTCAT  450

seq1  GGCCGGCCCCGCCCCGCCCCCTTCTGCCTTTCTCTGCCTCTACTCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGCCCCGCCCCGCCCCCTTCTGCCTTTCTCTGCCTCTACTCCTTTC  500

seq1  AACTCTCCCATCCCCTAAATAAACTCTATTCCACACTTTTTTTAAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCCATCCCCTAAATAAACTCTATTCCACACTTTTTTTAAAAAGT  550

seq1  ATATTAGACAATGGAACATCTTAAGTACCATAAGAGCAGCACAGATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGACAATGGAACATCTTAAGTACCATAAGAGCAGCACAGATTTCT  600

seq1  AAGAAGCCCTAAACCTGCTCTAATACCCATTAGAGTAAAAGAACTCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCCTAAACCTGCTCTAATACCCATTAGAGTAAAAGAACTCTCAC  650

seq1  ACAAACAAAAATATAGTCTCCTTCATTAGCACCAAATATTGTTAAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAATATAGTCTCCTTCATTAGCACCAAATATTGTTAAATATT  700

seq1  TTTCTTATAATACTCACATATGGCCACAGTCAGCTAATATTCTGGATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATAATACTCACATATGGCCACAGTCAGCTAATATTCTGGATATA  750

seq1  ACTGGGATTACAGGGATGTACCACTGTTTCTGGCTACATAGTTTATCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATTACAGGGATGTACCACTGTTTCTGGCTACATAGTTTATCTAA  800

seq1  AATTTTGCACGTCCAAAGCTAAAGACTGAGAATAATTTCAAAATAAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCACGTCCAAAGCTAAAGACTGAGAATAATTTCAAAATAAAATT  850

seq1  AAGAAAAAACAGCTTCATAAAAAATGGAAAGCATTTCTCTGATTTCTCAC  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGAAAAAACAGCTTCAT-AAAAATGGAAAGCATTTCTCTGATTTCTCAC  899

seq1  ACTGATTTGACACATTGGTAGCAGGCTTGGTAACATATGTCTTTAATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTGACACATTGGTAGCAGGCTTGGTAACATATGTCTTTAATACT  949

seq1  AGCACTAAGGAAGCAGAGTCAAGCCCATCTCTCTAGGTTCAAAGCCAGCC  1000
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  AGCACTAAGGAAGCAGAGTC-AGCCCATCTCTCTAGGTTCAAAG-CAGCC  997

seq1  TGGTTCACTATTCCAGAATAGTCAAGGATA-CACTGTAAGACTCTGTCTC  1049
      ||||||||||||| |||||||||||| ||| |||||||||||||||||||
seq2  TGGTTCACTATTCAAGAATAGTCAAGAATACCACTGTAAGACTCTGTCTC  1047

seq1  AATAAATAAATGAAAATAAACAAAAACCACTGCAACAGGTAAAACTA-TC  1098
      |||||||||||| |||||||||||||| |||||||||||| |||||| ||
seq2  AATAAATAAATGGAAATAAACAAAAACAACTGCAACAGGT-AAACTATTC  1096

seq1  TTT-ACATGAAATTTTTATTTATTAAAAATTATGCATTTTTATTTTGGCA  1147
      ||| ||||| || ||||||||||||||| |  ||||  | |||||  |  
seq2  TTTAACATGGAAGTTTTATTTATTAAAACTATTGCA--TGTATTT--GTC  1142

seq1  GAAAGGCCACTTAGATCCTCATTATGAGC  1176
      ||| |  |||||  |||||||||||||||
seq2  GAATG--CACTTGAATCCTCATTATGAGC  1169