BAC Information

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BAC

Clone NameB6Ng01-230B03
Chromosome3 (Build37)
Map Location 138,445,058 - 138,446,032
singlet/doubletsinglet
Overlap geneTspan5
Upstream geneH2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
Downstream geneLOC620771, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230B03.bB6Ng01-230B03.g
ACCGA043034GA043035
length9781,082
definitionB6Ng01-230B03.b B6Ng01-230B03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggcacgaaaataagcaagaaaatgcatggcctcttcaatcct
agcctcaaagtcacatgacatcatttccaccataggcctgcccagatgca
caaagaatggccttaggtctcagttctccgtgaacagagagtctgaggcc
gcctttattaacactcagtgctaccttgccccagagtctgaagcccctcc
cccacgaagtcatatgttgagacctattccccactcctataatactgtac
cctggggctttgatgatacgggatgcctgcccccaataaaggaagcccag
ggtaccatctaagaagtggcgagcggtttcacatcctcaggtcctgtgac
cctggatctctcagcctccagactgtgagacgaaatgtctgttggttttt
agttactcctccctggtaatttcacttagcagtcacctgacagacagccg
ctaatcaatctgtgctctgtcaggtcgctccttggtaaaccgctcacttc
tttgcatcattatttaattgatttttgcttttccagtgagagggtaagct
ggttttttgttgttgttgttgttgttgttgttgttgttttctgttggatc
ctgagcttcttggtggctggcacagagagcaggagcttggtgaactgatg
gaaggtgaaaaacatagaaccagaaaagccataagcatgataaacctgta
aggcaggctcagtatgtgtgacccacggcttggttggatcatctttcctg
gtcttgattctgcagtcaatctgaggctgccctcgtgagctgcagagtct
tgttgacgcccgccattagacacagcaacgtaagtaaaagtgaggcggct
gttttgctgagtgctttctacaaaagcggataacagaattaaaatttaag
gtttaaataggccaccgctaatagggctcatgcgcttcatgggaattgtg
tttattgagtagaaggaaaggtaggatg
gaattccacatgcccagatcttactgaaaatttgctaacaatatgaaaga
tcaacctagtatctcttttctaaaaaccacctatcctttagaaaagtttg
ccaatgaaaattaccttgatgaacccagggaacaatttaaaataacaatc
ttaagtttttttaatttttttaattaaaaaatgatattaagtgcaatgaa
attaaagagaataatcaccagagtggtgctcaagaaaatacaaacatagg
ctgacggaaatgacaaggacattctaggacttgagaacactattcagttg
tgagatagaaacactgaagaggcttcaaaggaaatgaagatgaaattgaa
aatccaataaataactcacctagaaaactcaaagccttatgagtagaatg
gaccaaaaaaaaaaaagatagtaaataatatataccaaatgaacaatgaa
tatgatcttaaaaccacaggaacatacaggaagtgtggggcaccatgaaa
tgaccgaaccttcgagttataagcatgagggagaagaagcccaaatcaaa
tggtatagctcttcaacaagatcatagaagaaaatgtccccaaactatgc
aaagtcatacccatacagattaaagaaacacacagaacaccacatagata
aggccagaaaaaaacaaagaaaaactccccaaagcttattatagctaaaa
cattaagtatatagaacaaagaaatgtcctgaaagctataataataataa
taataaacctcaagttacatataaaggaaaacttaccagaagaccatctg
atttctcagtagaaaatttgaaaactggaaaagcctcagtatgttacaaa
tgtcattaatatctttaaaatatcagttgcctcaactctccaatagaaga
tacaggctaactgagtggatggtaaaaacaaaatccatctacctggtcct
ctaacaagaaacacattgggcttaagtaatgccatagaagtaaagggatt
gacagagtctcatcagatgggaccaggagcaagcaggcatcacttactaa
taactgaacaaaaaataggaattcttaaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138445058_138446032
seq2: B6Ng01-230B03.b_44_1021

seq1  GAATTCCAGGCACGAAAATAAGCAAGAAAATGCATGGCCTCTTCAATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCACGAAAATAAGCAAGAAAATGCATGGCCTCTTCAATCCT  50

seq1  AGCCTCAAAGTCACATGACATCATTTCCACCATAGGCCTGCCCAGATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAAAGTCACATGACATCATTTCCACCATAGGCCTGCCCAGATGCA  100

seq1  CAAAGAATGGCCTTAGGTCTCAGTTCTCCGTGAACAGAGAGTCTGAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATGGCCTTAGGTCTCAGTTCTCCGTGAACAGAGAGTCTGAGGCC  150

seq1  GCCTTTATTAACACTCAGTGCTACCTTGCCCCAGAGTCTGAAGCCCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATTAACACTCAGTGCTACCTTGCCCCAGAGTCTGAAGCCCCTCC  200

seq1  CCCACGAAGTCATATGTTGAGACCTATTCCCCACTCCTATAATACTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGAAGTCATATGTTGAGACCTATTCCCCACTCCTATAATACTGTAC  250

seq1  CCTGGGGCTTTGATGATACGGGATGCCTGCCCCCAATAAAGGAAGCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCTTTGATGATACGGGATGCCTGCCCCCAATAAAGGAAGCCCAG  300

seq1  GGTACCATCTAAGAAGTGGCGAGCGGTTTCACATCCTCAGGTCCTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCATCTAAGAAGTGGCGAGCGGTTTCACATCCTCAGGTCCTGTGAC  350

seq1  CCTGGATCTCTCAGCCTCCAGACTGTGAGACGAAATGTCTGTTGGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATCTCTCAGCCTCCAGACTGTGAGACGAAATGTCTGTTGGTTTTT  400

seq1  AGTTACTCCTCCCTGGTAATTTCACTTAGCAGTCACCTGACAGACAGCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCCTCCCTGGTAATTTCACTTAGCAGTCACCTGACAGACAGCCG  450

seq1  CTAATCAATCTGTGCTCTGTCAGGTCGCTCCTTGGTAAACCGCTCACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCAATCTGTGCTCTGTCAGGTCGCTCCTTGGTAAACCGCTCACTTC  500

seq1  TTTGCATCATTATTTAATTGATTTTTGCTTTTCCAGTGAGAGGGTAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCATTATTTAATTGATTTTTGCTTTTCCAGTGAGAGGGTAAGCT  550

seq1  GGTTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTCTGTTGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTCTGTTGGATC  600

seq1  CTGAGCTTCTTGGTGGCTGGCACAGAGAGCAGGAGCTTGGTGAACTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTCTTGGTGGCTGGCACAGAGAGCAGGAGCTTGGTGAACTGATG  650

seq1  GAAGGTGAAAAACATAGAACCAGAAAAGCCATAAGCATGATAAACCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAAAAACATAGAACCAGAAAAGCCATAAGCATGATAAACCTGTA  700

seq1  AGGCAGGCTCAGTATGTGTGACCCACGGCTTGGTTGGATCATC-TTCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGCAGGCTCAGTATGTGTGACCCACGGCTTGGTTGGATCATCTTTCCTG  750

seq1  GTCTTGATTCTGCAGTCAATCTGAGGCTG-CCTCGTGAGCTGCAGAGTCT  798
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCTTGATTCTGCAGTCAATCTGAGGCTGCCCTCGTGAGCTGCAGAGTCT  800

seq1  TGTTGACGCCCGCCATTAGACACAGCAACGTAAGTAAAAGTGAGGCCGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTTGACGCCCGCCATTAGACACAGCAACGTAAGTAAAAGTGAGG-CGGC  849

seq1  TG-TTTGCTGAGTGCTTTCTACAAAAGCGGATAAACAGAATTAAAAATTT  897
      || ||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  TGTTTTGCTGAGTGCTTTCTACAAAAGCGGAT-AACAGAATT-AAAATTT  897

seq1  AAGGTTTAAATAGGCCACCGCTAATAGGGCTCATGCGC-TCAT-GGATTT  945
      |||||||||||||||||||||||||||||||||||||| |||| ||| ||
seq2  AAGGTTTAAATAGGCCACCGCTAATAGGGCTCATGCGCTTCATGGGAATT  947

seq1  GTGTTTATTGAGTAG-AGGGAAGGTAGGATG  975
      ||||||||||||||| ||| |||||||||||
seq2  GTGTTTATTGAGTAGAAGGAAAGGTAGGATG  978