BAC Information

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BAC

Clone NameB6Ng01-230O04
Chromosome3 (Build37)
Map Location 95,461,402 - 95,596,800
singlet/doubletdoublet
Overlap geneMcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327
Upstream geneTuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa
Downstream genePrpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230O04.bB6Ng01-230O04.g
ACCGA043631GA043632
length1,1071,076
definitionB6Ng01-230O04.b B6Ng01-230O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,461,402 - 95,462,504)(95,595,742 - 95,596,800)
sequence
tgtgtcaagttgatattaagtctaaccagtccaccaaagatcttcaccgt
tttatatggtgctggggatcaacccaggacttctacaagggtaggcaaat
tctctaccaactgagttactcccgtaaccatcctttgttcattttagaca
gcaggctcatcatgtagccaaaaatgagttttaaattgagtctcttgcct
ctgcctccccaggcctgggcaagctcttctgccaattgagctataggcct
agccaccataaatggctcatattttagacttttactgtttggggataggg
tagggagctaggctcttctggcagccagaggtcaactctggaaagtggtc
tcactccttcattgttaggtgggttctgtgtattgaactcaggtctttag
ggctgggtttcaggagcctttcaccagttgaatctttcacaggctccaca
taaataaccccttaatagctgtccatgaaaagtcattttggccaggcagt
gtggggcacgcctttaattccagcactcgggaggcagaggcaggaggatt
tctgagtttgaggccagcctgatctacagagtgagttccagtgcagccag
ggctacacagagaaaccctgtctcgaaaaacaaaaaaacaaaaacaaaaa
acaaaaaacaaaaaaaaccggaacggaaagtcattttggaacacagggag
tgagggctcacagtagaaaaatgacagagcaggactccccctaactttta
agcaaatcaatggttaatattcctttgtgtatgagactggagatgccctc
cctggtttgctcttccagggtttaactcccagcacccacctggaggcagg
cacacaaccacaaatacacacaaacaaaaaagtgtttaagactggtatgt
tataaaaacacagcaaggtagtgcaacgagaaaggcttaagcaagactgc
ttacgttaggaccagcctgggctattgcagagtttcagggccagcttgaa
atttcaaaaacccgacaccagatcagcatgcgtcccgagcaggaccattt
ccctgggaagcaaagcacttgggccagccgggctgagagttgtacggaca
taaaagc
gaattcttagaaataaatgaattctgaaggagatggaggaggtagagagc
atggactgctgtctgaggttgtagaatggtagaatgggaatgggtgagtg
tggtcagagacagggctgtgtgagcagatcctagaaggcaatgagtgtga
ggtgaggagcctgagtgactgtagaacttgggtcgtccaggtgaatgtta
gaattgcccagcattttaacagtgaaccttaggtgggttgagtctttgaa
aagcttagccttcgtgtaaacctggaatcaaattatgcccagaacattca
gatatttcaaatagcttcagccagcaaatggaggcacttaaatgttttgt
gagaagtgtctggattggttgatctaaggatctgtatatggaatactatt
aaacatgatttgcagttattttctggtttgaggtcagtgttgtacaagat
tagttttcttctaatcttgctatttgtacaagttcgttcaactctttctc
cttttcttttttcttcccttcccttcccttcctctttctttctctctctc
tctctctctttctttctttctttctttgtctccacaaatatttggggaaa
ctattttattttggtttaattaattaattaattaattgtacaatccagat
tgtatccccctcctggcccaccctctaactgtcccccatccctacctccc
tatctccatgaggatgtccctatccttcactctccaccccacaagacctt
tcccattctctggacctccagtctcttgagggttaggtttcatcttcgct
gactgaacccaggcctggcagtcctctgctgtatgtgtgttgaggtcctc
atatccgctactgtatgatgcccgggttggtgggttcagggtctgaaaga
atctcagggttccaggtaaatttgagccctgcaaggcaaccctcctcctc
agcttccttccatcttttccctaaattcaactacaagggtcaacagcttc
tgttctattgggttgggtgtaaaatactgcatctgaatcttttcagcctg
ccttggttaggttcttttgaagggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95461402_95462504
seq2: B6Ng01-230O04.b_57_1163

seq1  TGTGTCAAGTTGATATTAAGTCTAACCAGTCCACCAAAGATCTTCACCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAAGTTGATATTAAGTCTAACCAGTCCACCAAAGATCTTCACCGT  50

seq1  TTTATATGGTGCTGGGGATCAACCCAGGACTTCTACAAGGGTAGGCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGGTGCTGGGGATCAACCCAGGACTTCTACAAGGGTAGGCAAAT  100

seq1  TCTCTACCAACTGAGTTACTCCCGTAACCATCCTTTGTTCATTTTAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCAACTGAGTTACTCCCGTAACCATCCTTTGTTCATTTTAGACA  150

seq1  GCAGGCTCATCATGTAGCCAAAAATGAGTTTTAAATTGAGTCTCTTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTCATCATGTAGCCAAAAATGAGTTTTAAATTGAGTCTCTTGCCT  200

seq1  CTGCCTCCCCAGGCCTGGGCAAGCTCTTCTGCCAATTGAGCTATAGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCCAGGCCTGGGCAAGCTCTTCTGCCAATTGAGCTATAGGCCT  250

seq1  AGCCACCATAAATGGCTCATATTTTAGACTTTTACTGTTTGGGGATAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATAAATGGCTCATATTTTAGACTTTTACTGTTTGGGGATAGGG  300

seq1  TAGGGAGCTAGGCTCTTCTGGCAGCCAGAGGTCAACTCTGGAAAGTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGCTAGGCTCTTCTGGCAGCCAGAGGTCAACTCTGGAAAGTGGTC  350

seq1  TCACTCCTTCATTGTTAGGTGGGTTCTGTGTATTGAACTCAGGTCTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTTCATTGTTAGGTGGGTTCTGTGTATTGAACTCAGGTCTTTAG  400

seq1  GGCTGGGTTTCAGGAGCCTTTCACCAGTTGAATCTTTCACAGGCTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTTTCAGGAGCCTTTCACCAGTTGAATCTTTCACAGGCTCCACA  450

seq1  TAAATAACCCCTTAATAGCTGTCCATGAAAAGTCATTTTGGCCAGGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACCCCTTAATAGCTGTCCATGAAAAGTCATTTTGGCCAGGCAGT  500

seq1  GTGGGGCACGCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCACGCCTTTAATTCCAGCACTCGGGAGGCAGAGGCAGGAGGATT  550

seq1  TCTGAGTTTGAGGCCAGCCTGATCTACAGAGTGAGTTCCAGTGCAGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTGAGGCCAGCCTGATCTACAGAGTGAGTTCCAGTGCAGCCAG  600

seq1  GGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAAAACAAAAACAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAAAACAAAAACAAAAA  650

seq1  ACAAAAAACAAAAAAAACCGGAACGGAAAGTCATTTTGGAACACAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAAAAAAAACCGGAACGGAAAGTCATTTTGGAACACAGGGAG  700

seq1  TGAGGGCTCACAGTAGAAAAATGACAGAGCAGGACTCCCCCTAACTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTCACAGTAGAAAAATGACAGAGCAGGACTCCCCCTAACTTTTA  750

seq1  AGCAAATCAATGGTTAATATTCCTTTGTGTATGAGACTGGAGATGCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCAATGGTTAATATTCCTTTGTGTATGAGACTGGAGATGCCCTC  800

seq1  CCTGGTTTGCTCTTCCAGGGTTTAACTCCCAGCACCCACCTGGAGGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTGCTCTTCCAGGGTTTAACTCCCAGCACCCACCTGGAGGCAGG  850

seq1  CACACAACCACAAATACACACAAACAAAAAAGTGTTTAAGACTGGTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACCACAAATACACACAAACAAAAAAGTGTTTAAGACTGGTATGT  900

seq1  TATAAAAACACAGC-AGGTAGTGCAACGAGAAAGGCTAAGGCAGGACTGC  949
      |||||||||||||| |||||||||||||||||||||| | ||| ||||| 
seq2  TATAAAAACACAGCAAGGTAGTGCAACGAGAAAGGCTTAAGCAAGACTG-  949

seq1  CTAACGTTAGGACCAGCCTGGGCTA-TGCAGAGTTCCAGGG-CAGCTTGA  997
      || |||||||||||||||||||||| ||||||||| ||||| ||||||||
seq2  CTTACGTTAGGACCAGCCTGGGCTATTGCAGAGTTTCAGGGCCAGCTTGA  999

seq1  AA-TTCAAAAA-CCGACA-CAGATCAGCAGGCGTTCCCGAGCAGGAACCA  1044
      || |||||||| |||||| |||||||||| ||| |||||||||||| |  
seq2  AATTTCAAAAACCCGACACCAGATCAGCATGCG-TCCCGAGCAGGACCAT  1048

seq1  TTCCCCGGGAAGCCAAGCACTT-GGCCAGCCGGGCTGAGAGTTGTACCGG  1093
      ||||| ||||||| |||||||| ||||||||||||||||||||||| |||
seq2  TTCCCTGGGAAGCAAAGCACTTGGGCCAGCCGGGCTGAGAGTTGTA-CGG  1097

seq1  ACAAAAAAGC  1103
      ||| ||||||
seq2  ACATAAAAGC  1107

seq1: chr3_95595742_95596800
seq2: B6Ng01-230O04.g_66_1141 (reverse)

seq1  TGCCCTTCAAAAG-ACCTAAC--AAGCA-GCTG-AAAGAGTCAGATGCAG  45
      ||||||||||||| |||||||  | ||| |||| ||||| ||||||||||
seq2  TGCCCTTCAAAAGAACCTAACCAAGGCAGGCTGAAAAGATTCAGATGCAG  50

seq1  ATATTTACACCCAA-CCAATAG-ACAGAAGCTGCTGACCCTTGTAGTTGA  93
         ||||||||||| ||||||| |||||||||| ||||||||||||||||
seq2  TATTTTACACCCAACCCAATAGAACAGAAGCTGTTGACCCTTGTAGTTGA  100

seq1  A-TTAGGGAAAAGATGGAA-GAAGCTGAGGAGGAGGGTGACCTTGCA-GG  140
      | ||||||||||||||||| ||||||||||||||||||  ||||||| ||
seq2  ATTTAGGGAAAAGATGGAAGGAAGCTGAGGAGGAGGGTTGCCTTGCAGGG  150

seq1  CTC-AATTTACCTGGACCCCTGAGA-TCTCTCAGACCCTGAA-CCACCAA  187
      ||| |||||||||||| |||||||| ||| |||||||||||| |||||||
seq2  CTCAAATTTACCTGGAACCCTGAGATTCTTTCAGACCCTGAACCCACCAA  200

seq1  -CCGGGCATCATACAGTAGCGGATATGAGGACCTCAACACACATACAGCA  236
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGCATCATACAGTAGCGGATATGAGGACCTCAACACACATACAGCA  250

seq1  GAGGACTGCCAGGCCTGGGTTCAGTCAGCGAAGATG-AACCTAACCCTCA  285
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGACTGCCAGGCCTGGGTTCAGTCAGCGAAGATGAAACCTAACCCTCA  300

seq1  AGAGACTGGAGGTCCAGAGAATGGG-AAGGTCTTGTGGGGTGGAGAGTG-  333
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  AGAGACTGGAGGTCCAGAGAATGGGAAAGGTCTTGTGGGGTGGAGAGTGA  350

seq1  AGGATAGGGACATCCTCATGGAGATAGGGAGGTAGGGATGGGGGACAGTT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGGGACATCCTCATGGAGATAGGGAGGTAGGGATGGGGGACAGTT  400

seq1  AGAGGGTGGGCCAGGAGGGGGATACAATCTGGATTGTACAATTAATTAAT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGGGCCAGGAGGGGGATACAATCTGGATTGTACAATTAATTAAT  450

seq1  TAATTAATTAAACCAAAATAAAATAGTTTCCCCAAATATTTGTGGAGACA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTAAACCAAAATAAAATAGTTTCCCCAAATATTTGTGGAGACA  500

seq1  AAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAAAGAAAGAGGAAGG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAAAGAAAGAGGAAGG  550

seq1  GAAGGGAAGGGAAGAAAAAAGAAAAGGAGAAAGAGTTGAACGAACTTGTA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGGGAAGAAAAAAGAAAAGGAGAAAGAGTTGAACGAACTTGTA  600

seq1  CAAATAGCAAGATTAGAAGAAAACTAATCTTGTACAACACTGACCTCAAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCAAGATTAGAAGAAAACTAATCTTGTACAACACTGACCTCAAA  650

seq1  CCAGAAAATAACTGCAAATCATGTTTAATAGTATTCCATATACAGATCCT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATAACTGCAAATCATGTTTAATAGTATTCCATATACAGATCCT  700

seq1  TAGATCAACCAATCCAGACACTTCTCACAAAACATTTAAGTGCCTCCATT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAACCAATCCAGACACTTCTCACAAAACATTTAAGTGCCTCCATT  750

seq1  TGCTGGCTGAAGCTATTTGAAATATCTGAATGTTCTGGGCATAATTTGAT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGAAGCTATTTGAAATATCTGAATGTTCTGGGCATAATTTGAT  800

seq1  TCCAGGTTTACACGAAGGCTAAGCTTTTCAAAGACTCAACCCACCTAAGG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTTACACGAAGGCTAAGCTTTTCAAAGACTCAACCCACCTAAGG  850

seq1  TTCACTGTTAAAATGCTGGGCAATTCTAACATTCACCTGGACGACCCAAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTTAAAATGCTGGGCAATTCTAACATTCACCTGGACGACCCAAG  900

seq1  TTCTACAGTCACTCAGGCTCCTCACCTCACACTCATTGCCTTCTAGGATC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGTCACTCAGGCTCCTCACCTCACACTCATTGCCTTCTAGGATC  950

seq1  TGCTCACACAGCCCTGTCTCTGACCACACTCACCCATTCCCATTCTACCA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACACAGCCCTGTCTCTGACCACACTCACCCATTCCCATTCTACCA  1000

seq1  TTCTACAACCTCAGACAGCAGTCCATGCTCTCTACCTCCTCCATCTCCTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAACCTCAGACAGCAGTCCATGCTCTCTACCTCCTCCATCTCCTT  1050

seq1  CAGAATTCATTTATTTCTAAGAATTC  1059
      ||||||||||||||||||||||||||
seq2  CAGAATTCATTTATTTCTAAGAATTC  1076