BAC Information

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BAC

Clone NameB6Ng01-230P24
Chromosome3 (Build37)
Map Location 15,985,936 - 16,093,210
singlet/doubletdoublet
Overlap geneYthdf3
Upstream geneLOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
Downstream geneLOC100040034, LOC100040059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230P24.bB6Ng01-230P24.g
ACCGA043717GA043718
length9411,153
definitionB6Ng01-230P24.b B6Ng01-230P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,985,936 - 15,986,797)(16,092,051 - 16,093,210)
sequence
gaattctcattacagccatgaatggcaacctacattacacaatattagaa
cgaaggtgggttgtggttttaggaggaactgaagtattgtattattcatg
aaagggttagtagaatggaattttcctggtgcatgtttttcactaggccc
agatgaataacataattaggtatttaataagtgactcctggtggtgggtt
taacaatagacgagcattgcatcagacctttcacctggctcctgtgttta
gctgatcttagatagggctgttcctatttcggttgtaaacactgcctggc
tccccctcaactttttatgtatgcattttctttgtttttttgtaaagaac
cattgtgcatttcaatgtaccttggctaatgtatttgcctagctttcttg
ttttacttctgtattgtaagtctgctgcttattttgagaaattacgttca
gatacaacattcccttgtgttcacatctgtttctcaccttttcactgact
ccctgcccacctgtactgggactctgattctcccacggaattgaggggcc
gactgaggccagtccttggcagaggttcttaatactgacatggaaaagtg
ttcctgtctgtctctgtctatgtgcctctgacatacatcaacaattctgt
tttgaataattctgtaattcttttctgaaaagaggccttaaaaagtattt
tgtagtcagacaagtctaaggcattttgtgttttgggctcaagaccactc
agtacctggaagacatgtaccaggccatgatctatgttttcaatcaagct
aggtatggccttggagagcacagaataccattgatcttattactttcact
tctctccagaggggaggttgatgaaattttttcttgtgtgtgagcgctat
ccttctgggttgttttttccatccccatctgtatagagagg
gaattcatgccctgtactggagcattccacaatactgcggcaagaactga
ccctccaacttaattggtattatatttgtgtataaaaatgaagacaaagc
tggacgtggtggcgcacgcctttaatcccagcacttgggaggcagaggca
ggcggatttctgagttcgaggccagcctggtctacaaaatgagttccagg
atagccagggctatacagagaaaccctgtgtcaaaaaaaaaaaaaagaag
aagaagaagaagataaaacacatcaatcaggaaagagtttaacttcatgg
ggtgttgtgtctgaggcttgacataaagaaaaaaaaaatgtatggtacaa
atacaaatattaagatgatttttttttctaaagaaactgagaaaacattt
atattctcagaaattaatgattaagtcttatttcccaaggatgagcaatg
ctgactaaagatgagataaagtatgtgaaccattctactaaatgctctca
tatgacaaatttatccacttctctggaactatggtagtgttttctgtgtg
ctttattttttgttttgatttctgagagatacaatcttcttactatctca
accatgtcttattctggcctcttgcctcttcctaagtgctaagatcacac
caccacatctagcaggtaattcttttattagtattgagaactacacaatc
aaatttggattttaggactctggaatagcaacataatgccaatggaaaaa
atgacattaatagccagccatcgttaaactacagggcatgtgatgccaaa
acaaaataaactcaaatataattattttccaaagcctcctcaggtaaagc
attagggactgctttagtaatctggggttctacttggtttgtgatatgtg
ccacaccccctcctctaagatgtacttttgcttatcatacaaagcatgca
tacatgcatactaagcatatatttcctctctgatcaatgcactagcaaac
ctgaggtaggtcacataggcctacatgagataacttctctgacaagggat
attttaactctctaacagcaatcacactttggaaaacttctgttcaagta
actcatacacagtctttggactgtagtcagatctagtccagaactgttta
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_15985936_15986797
seq2: B6Ng01-230P24.b_119_988

seq1  GGAGGAACTGAAGTATTGTATTATTCATGAAAGGGTTAGTAGAATGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACTGAAGTATTGTATTATTCATGAAAGGGTTAGTAGAATGGAAT  50

seq1  TTTCCTGGTGCATGTTTTTCACTAGGCCCAGATGAATAACATAATTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTGCATGTTTTTCACTAGGCCCAGATGAATAACATAATTAGGT  100

seq1  ATTTAATAAGTGACTCCTGGTGGTGGGTTTAACAATAGACGAGCATTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAGTGACTCCTGGTGGTGGGTTTAACAATAGACGAGCATTGCA  150

seq1  TCAGACCTTTCACCTGGCTCCTGTGTTTAGCTGATCTTAGATAGGGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTTTCACCTGGCTCCTGTGTTTAGCTGATCTTAGATAGGGCTGT  200

seq1  TCCTATTTCGGTTGTAAACACTGCCTGGCTCCCCCTCAACTTTTTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTCGGTTGTAAACACTGCCTGGCTCCCCCTCAACTTTTTATGTA  250

seq1  TGCATTTTCTTTGTTTTTTTGTAAAGAACCATTGTGCATTTCAATGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTCTTTGTTTTTTTGTAAAGAACCATTGTGCATTTCAATGTACC  300

seq1  TTGGCTAATGTATTTGCCTAGCTTTCTTGTTTTACTTCTGTATTGTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAATGTATTTGCCTAGCTTTCTTGTTTTACTTCTGTATTGTAAGT  350

seq1  CTGCTGCTTATTTTGAGAAATTACGTTCAGATACAACATTCCCTTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTTATTTTGAGAAATTACGTTCAGATACAACATTCCCTTGTGTT  400

seq1  CACATCTGTTTCTCACCTTTTCACTGACTCCCTGCCCACCTGTACTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTTTCTCACCTTTTCACTGACTCCCTGCCCACCTGTACTGGGA  450

seq1  CTCTGATTCTCCCACGGAATTGAGGGGCCGACTGAGGCCAGTCCTTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTCTCCCACGGAATTGAGGGGCCGACTGAGGCCAGTCCTTGGCA  500

seq1  GAGGTTCTTAATACTGACATGG-AAAGTGTTCCTGTCTGTCTCTGTCTAT  549
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGGTTCTTAATACTGACATGGAAAAGTGTTCCTGTCTGTCTCTGTCTAT  550

seq1  GTGCCTCTGACATACATCAACAATTCTGTTTTGAATAATTCTGTAATTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTGACATACATCAACAATTCTGTTTTGAATAATTCTGTAATTCT  600

seq1  TTTCTGAAAAGAGGCCTTAAAAAGTATTTTGTAGTCAGACAAGTCTAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAAAGAGGCCTTAAAAAGTATTTTGTAGTCAGACAAGTCTAAGG  650

seq1  CA-TTTGTGTTTTGGGCTCAAGACCACTCAGTACCTGGAAGACATGTACC  698
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTGTTTTGGGCTCAAGACCACTCAGTACCTGGAAGACATGTACC  700

seq1  AGGCCATGATCTATG-TTTCAATCAAGCTAGGTATGGCCTTGGAGAGCCA  747
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AGGCCATGATCTATGTTTTCAATCAAGCTAGGTATGGCCTTGGAGAG-CA  749

seq1  CAGATTACCATTGATCTTATTACTTTCACTTCTCTCCAGAGGGGAGG-TG  796
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGAATACCATTGATCTTATTACTTTCACTTCTCTCCAGAGGGGAGGTTG  799

seq1  ATGAATTTTTTTCTTGTGTGTGAGCGCCAT-CTTCT-GGTTGTTTTT--C  842
      ||||| ||||||||||||||||||||| || ||||| ||||||||||  |
seq2  ATGAAATTTTTTCTTGTGTGTGAGCGCTATCCTTCTGGGTTGTTTTTTCC  849

seq1  ATTCCCATCTG-ATAGAGAGG  862
      || |||||||| |||||||||
seq2  ATCCCCATCTGTATAGAGAGG  870

seq1: chr3_16092051_16093210
seq2: B6Ng01-230P24.g_69_1221 (reverse)

seq1  CCAT-AACAG-TCTGG-CTAGATCTGCCCTCCAGTCCAAAGACTAGATTG  47
      |||| ||||| ||||| |||||||||  || |||||||||||||    ||
seq2  CCATAAACAGTTCTGGACTAGATCTG-ACTACAGTCCAAAGACT---GTG  46

seq1  TATTGAGTCTACTTTTGAACAGAAGTTTTTCAAAGTGTGATTGTTGTTAG  97
      || ||||| |||  ||||||||||||||| ||||||||||||| ||||||
seq2  TA-TGAGT-TAC--TTGAACAGAAGTTTTCCAAAGTGTGATTGCTGTTAG  92

seq1  AAGAGTAAAAATTTATCCCCTTGTCCAGAGAGGTTATCTTCATGTAGGCC  147
       ||||| ||||| |   ||||||| |||||| |||||| |||||||||||
seq2  -AGAGTTAAAATAT---CCCTTGT-CAGAGAAGTTATC-TCATGTAGGCC  136

seq1  TATGTGACCTAACCTCAGG-TTGCTAGTGCATTGATCAGAGAGG-AATAT  195
      |||||||||| |||||||| |||||||||||||||||||||||| |||||
seq2  TATGTGACCT-ACCTCAGGTTTGCTAGTGCATTGATCAGAGAGGAAATAT  185

seq1  ATGCTTAGTATGCATGTATGCATGC-TTGTATGATAAGCAAAAGTACATT  244
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  ATGCTTAGTATGCATGTATGCATGCTTTGTATGATAAGCAAAAGTACA-T  234

seq1  CTTAGAGGA-GGGGTGT-GCACATATCACAAACCAAGTAGAACCCCAGAT  292
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  CTTAGAGGAGGGGGTGTGGCACATATCACAAACCAAGTAGAACCCCAGAT  284

seq1  TACTAAAGCAGTCCCT-ATGCTTTACCTGAGGAGGCTTTGGAAAATAATT  341
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACTAAAGCAGTCCCTAATGCTTTACCTGAGGAGGCTTTGGAAAATAATT  334

seq1  ATATTTGAGTTTATTTTGTTTTGGCATCACATGCCCTGTAGTTTAACGAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAGTTTATTTTGTTTTGGCATCACATGCCCTGTAGTTTAACGAT  384

seq1  GGCTGGCTATTAATGTCATTTTTTCCATTGGCATTATGTTGCTATTCCAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTATTAATGTCATTTTTTCCATTGGCATTATGTTGCTATTCCAG  434

seq1  AGTCCTAAAATCCAAATTTGATTGTGTAGTTCTCAATACTAATAAAAGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAAATCCAAATTTGATTGTGTAGTTCTCAATACTAATAAAAGAA  484

seq1  TTACCTGCTAGATGTGGTGGTGTGATCTTAGCACTTAGGAAGAGGCAAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCTAGATGTGGTGGTGTGATCTTAGCACTTAGGAAGAGGCAAGA  534

seq1  GGCCAGAATAAGACATGGTTGAGATAGTAAGAAGATTGTATCTCTCAGAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAATAAGACATGGTTGAGATAGTAAGAAGATTGTATCTCTCAGAA  584

seq1  ATCAAAACAAAAAATAAAGCACACAGAAAACACTACCATAGTTCCAGAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAACAAAAAATAAAGCACACAGAAAACACTACCATAGTTCCAGAGA  634

seq1  AGTGGATAAATTTGTCATATGAGAGCATTTAGTAGAATGGTTCACATACT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATAAATTTGTCATATGAGAGCATTTAGTAGAATGGTTCACATACT  684

seq1  TTATCTCATCTTTAGTCAGCATTGCTCATCCTTGGGAAATAAGACTTAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCATCTTTAGTCAGCATTGCTCATCCTTGGGAAATAAGACTTAAT  734

seq1  CATTAATTTCTGAGAATATAAATGTTTTCTCAGTTTCTTTAGAAAAAAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTCTGAGAATATAAATGTTTTCTCAGTTTCTTTAGAAAAAAAA  784

seq1  ATCATCTTAATATTTGTATTTGTACCATACATTTTTTTTTTCTTTATGTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTAATATTTGTATTTGTACCATACATTTTTTTTTTCTTTATGTC  834

seq1  AAGCCTCAGACACAACACCCCATGAAGTTAAACTCTTTCCTGATTGATGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCAGACACAACACCCCATGAAGTTAAACTCTTTCCTGATTGATGT  884

seq1  GTTTTATCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTGACACAGGGTTTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTGACACAGGGTTTC  934

seq1  TCTGTATAGCCCTGGCTATCCTGGAACTCATTTTGTAGACCAGGCTGGCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGCCCTGGCTATCCTGGAACTCATTTTGTAGACCAGGCTGGCC  984

seq1  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  1034

seq1  GCGTGCGCCACCACGTCCAGCTTTGTCTTCATTTTTATACACAAATATAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCACCACGTCCAGCTTTGTCTTCATTTTTATACACAAATATAA  1084

seq1  TACCAATTAAGTTGGAGGGTCAGTTCTTGCCGCAGTATTGTGGAATGCTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATTAAGTTGGAGGGTCAGTTCTTGCCGCAGTATTGTGGAATGCTC  1134

seq1  CAGTACAGGGCATGAATTC  1160
      |||||||||||||||||||
seq2  CAGTACAGGGCATGAATTC  1153