BAC Information

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BAC

Clone NameB6Ng01-232O21
Chromosome3 (Build37)17 (Build37)
Map Location 20,018,221 - 20,019,33275,372,712 - 75,372,872
singlet/doubletsingletsinglet
Overlap geneHltf
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3
Downstream geneGyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232O21.bB6Ng01-232O21.g
ACCGA045142GA045143
length1,115972
definitionB6Ng01-232O21.b B6Ng01-232O21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,018,221 - 20,019,332)(75,372,712 - 75,372,872)
sequence
gaattctaagatatatgaacccctgggatgagggatgctgcgctctgctg
ttttactacttagaaatgtactgaaaatattatatttcaaattgtgtttc
caactggattcttctttaaattaaaaaaatcaataaaaatctaaaaattt
accttctttggtgtcacttagtgactgttttcctttgaactatttaacct
ttcctttaacagaaaaaaaagcatctcacttctgtaaatgttcgttacac
aatttttcattgaatcacgtaaaaagtactgttattataatttactcatt
cacatttaattttggtacaactattgaaattcttaagatcttagcgtata
tttaaagtttatataaaaattggcataaaacacgggtttcatttaatttc
ctcattttaagaacaaagggagttatgataaccatgtgtagtaaattata
gattttgcccttaaaataatgtttagaaataatccgattaggagtttatt
accagtattgctcacagggtttaaaactataagggcatattgatcacttc
cttgaatttccaccttataaattgacttaatgccttttttaaaacaaata
caacttattataaactttcagacttttgggaggtattttggtatttgagc
ttcctgcaaacaatcttgaaagatgtttcagtaaggaaagacctcacttt
gaggcttctttgaaagatgaagcctatcaaaggaatggtaggctgctggt
gataccactgcagtcacacaggcggatacatcattatctgtattgtgtgg
gacaaaaatggggtcccgagttccacttggagctagggccgatgggtgag
gcggacacgtccctgtgcgcaaccccacggaaccaaatggaactgtaagg
ccaggccggctggtcagtggacgttggactgtgacaagctgcaaggatcc
agctctgggggtgaggaaaggcacaatctgaggccccggtggaactgtct
gcgtcagctctgactctctggacccacagaatgccttttggcaccgtggg
aagagccagtttccggctcctggtcacacgagtctagggatgacagttct
ttgctcctgtaatcc
gaattctttctgtatccctgctgggcagtggtggcgcacgcctttaatcc
cagtgcttgggaggcagatgtaggcagatttctgagtttgaagccagcct
ggtctagagtgagttccagaacagccagggctacacagagaaaccctgtc
tttaaaaaaaaaaaaaagacactagatctttatccctttttaaattgagt
tgttttcttgatatttagattcttgagttccttttacattttgtgtacat
ttgtctattagttctcattcagatgtgtaattggtaaaaatcttttccca
ttctctagtctgccattttgccctagtaatagtgtcctttggcatgcaga
aactgctcggtttcatgagtcatatttattaattgctcattctagtgctt
acatgctaacatcattctgttcaaagaatcttttcctatgccaatgagtt
caaggctattctccactttttcttctgccaagttcaatgtgtctggtttt
atgttaaggtcttgatccatctggagttgagttttgagcagggtgataat
tatggatctatttgtatatttctacatgctgtcatcttctttaaccagca
ccattagttaaagatgctatgcgtgtttccagtgtgtattgctggcttct
ttatttaaaaaaaaaaaaatcaggtgttcataggtacatggatttgtctg
ggtgttcgatttgattatattgaccaatataaaatccatattttttatgc
attctacaatagtgccccaattttttgagaaaattcatgagaaaagtttt
acatccaaccctgtaattacctctgactctggattattataaaaagtttt
actttatatacctgggcagcactgacttctaagggtattaattcttgggt
cctagactatttctcttgatgagtatttatccaaaagggaggaaagataa
tcagaaaaataactcaggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_20018221_20019332
seq2: B6Ng01-232O21.b_47_1161

seq1  GAATTCTAAGATATATGAACCCCTGGGATGAGGGATGCTGCGCTCTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGATATATGAACCCCTGGGATGAGGGATGCTGCGCTCTGCTG  50

seq1  TTTTACTACTTAGAAATGTACTGAAAATATTATATTTCAAATTGTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTACTTAGAAATGTACTGAAAATATTATATTTCAAATTGTGTTTC  100

seq1  CAACTGGATTCTTCTTTAAATTAAAAAAATCAATAAAAATCTAAAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGATTCTTCTTTAAATTAAAAAAATCAATAAAAATCTAAAAATTT  150

seq1  ACCTTCTTTGGTGTCACTTAGTGACTGTTTTCCTTTGAACTATTTAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTTGGTGTCACTTAGTGACTGTTTTCCTTTGAACTATTTAACCT  200

seq1  TTCCTTTAACAGAAAAAAAAGCATCTCACTTCTGTAAATGTTCGTTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAACAGAAAAAAAAGCATCTCACTTCTGTAAATGTTCGTTACAC  250

seq1  AATTTTTCATTGAATCACGTAAAAAGTACTGTTATTATAATTTACTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCATTGAATCACGTAAAAAGTACTGTTATTATAATTTACTCATT  300

seq1  CACATTTAATTTTGGTACAACTATTGAAATTCTTAAGATCTTAGCGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAATTTTGGTACAACTATTGAAATTCTTAAGATCTTAGCGTATA  350

seq1  TTTAAAGTTTATATAAAAATTGGCATAAAACACGGGTTTCATTTAATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTTTATATAAAAATTGGCATAAAACACGGGTTTCATTTAATTTC  400

seq1  CTCATTTTAAGAACAAAGGGAGTTATGATAACCATGTGTAGTAAATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTAAGAACAAAGGGAGTTATGATAACCATGTGTAGTAAATTATA  450

seq1  GATTTTGCCCTTAAAATAATGTTTAGAAATAATCCGATTAGGAGTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGCCCTTAAAATAATGTTTAGAAATAATCCGATTAGGAGTTTATT  500

seq1  ACCAGTATTGCTCACAGGGTTTAAAACTATAAGGGCATATTGATCACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTATTGCTCACAGGGTTTAAAACTATAAGGGCATATTGATCACTTC  550

seq1  CTTGAATTTCCACCTTATAAATTGACTTAATGCCTTTTTTAAAACAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTTCCACCTTATAAATTGACTTAATGCCTTTTTTAAAACAAATA  600

seq1  CAACTTATTATAAACTTTCAGACTTTTGGGAGGTATTTTGGTATTTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATTATAAACTTTCAGACTTTTGGGAGGTATTTTGGTATTTGAGC  650

seq1  TTCCTGCAAACAATCTTGAAAGATGTTTCAGTAAGGAAAGACCTCACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCAAACAATCTTGAAAGATGTTTCAGTAAGGAAAGACCTCACTTT  700

seq1  GAGGCTTCTTTGAAAGATGAAGCCTATCAAAGGAATGGTAGGCTGCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCTTTGAAAGATGAAGCCTATCAAAGGAATGGTAGGCTGCTGGT  750

seq1  GATACCACTGCAGTCACACAGGCGGATACATCATTATCTGTATTGTGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCACTGCAGTCACACAGGCGGATACATCATTATCTGTATTGTGTGG  800

seq1  GACAAAAATGGGGTCCCGAG-TCCACTTGGAGCTAGGGCCGATGGGTGAG  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACAAAAATGGGGTCCCGAGTTCCACTTGGAGCTAGGGCCGATGGGTGAG  850

seq1  GCGGACACGT-CCTGTGCGCAACCCCACGGAACCCAATGGAACTGTAAGG  898
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  GCGGACACGTCCCTGTGCGCAACCCCACGGAACCAAATGGAACTGTAAGG  900

seq1  GCAGGCCGGCTGGCCAGTGGACGTTGGACTGTGACAAGCTGC-AGGATCC  947
       |||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  CCAGGCCGGCTGGTCAGTGGACGTTGGACTGTGACAAGCTGCAAGGATCC  950

seq1  AGCTCT-GGGGTGAGG-AAGGCACAATCTGAGGCCCCCGTGGAACTG-CC  994
      |||||| ||||||||| |||||||||||||||||||| ||||||||| | 
seq2  AGCTCTGGGGGTGAGGAAAGGCACAATCTGAGGCCCCGGTGGAACTGTCT  1000

seq1  GCGTCAGGCTCTGACTCTCTGGCACCACAG-ATGCTTTTGGGCACCGTGG  1043
      |||||| |||||||||||||||  |||||| |||| ||| ||||||||||
seq2  GCGTCA-GCTCTGACTCTCTGGACCCACAGAATGCCTTTTGGCACCGTGG  1049

seq1  G-AGAGCCAGTTCCGGGGTCCCTGGGCCACACGGAGGCCAGGGATGACAG  1092
      | |||||||||| | || |||   || ||||| ||| | |||||||||||
seq2  GAAGAGCCAGTTTCCGGCTCC--TGGTCACAC-GAGTCTAGGGATGACAG  1096

seq1  GTTCTTGCTCCTGTACATCC  1112
       |  ||||||||||| ||||
seq2  TTCTTTGCTCCTGTA-ATCC  1115

seq1: chr17_75372712_75372872
seq2: B6Ng01-232O21.g_84_734 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTTTTTTTTTTTAAATAAAGAAGCCAGCAATACACACTGGAAACACGCAT  50

seq1  --------------------------------------------------  0
                                                        
seq2  AGCATCTTTAACTAATGGTGCTGGTTAAAGAAGATGACAGCATGTAGAAA  100

seq1  --------------------------------------------------  0
                                                        
seq2  TATACAAATAGATCCATAATTATCACCCTGCTCAAAACTCAACTCCAGAT  150

seq1  --------------------------------------------------  0
                                                        
seq2  GGATCAAGACCTTAACATAAAACCAGACACATTGAACTTGGCAGAAGAAA  200

seq1  --------------------------------------------------  0
                                                        
seq2  AAGTGGAGAATAGCCTTGAACTCATTGGCATAGGAAAAGATTCTTTGAAC  250

seq1  --------------------------------------------------  0
                                                        
seq2  AGAATGATGTTAGCATGTAAGCACTAGAATGAGCAATTAATAAATATGAC  300

seq1  --------------------------------------------------  0
                                                        
seq2  TCATGAAACCGAGCAGTTTCTGCATGCCAAAGGACACTATTACTAGGGCA  350

seq1  --------------------------------------------------  0
                                                        
seq2  AAATGGCAGACTAGAGAATGGGAAAAGATTTTTACCAATTACACATCTGA  400

seq1  --------------------------------------------------  0
                                                        
seq2  ATGAGAACTAATAGACAAATGTACACAAAATGTAAAAGGAACTCAAGAAT  450

seq1  -------------------------------------------------T  1
                                                       |
seq2  CTAAATATCAAGAAAACAACTCAATTTAAAAAGGGATAAAGATCTAGTGT  500

seq1  TTTTTTTTTTTAAATGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTG  51
       |||||||||       |||||  ||||||||||||||||||||||||||
seq2  CTTTTTTTTT-------TTTTTAAAGACAGGGTTTCTCTGTGTAGCCCTG  543

seq1  GCTGCCCTGGAACTCACTCTGTAGACCAGGCTGACCTCGAACTCAGAAAT  101
      ||||  |||||||||||||  |||||||||||| | || |||||||||||
seq2  GCTGTTCTGGAACTCACTC--TAGACCAGGCTGGCTTCAAACTCAGAAAT  591

seq1  CCGCCTGCCTCTGCCTCCCAAGTCCTGGGATTAAAGGTGTGCACCACCAC  151
      | |||| | |||||||||||||  ||||||||||||| |||| |||||||
seq2  CTGCCTACATCTGCCTCCCAAGCACTGGGATTAAAGGCGTGCGCCACCAC  641

seq1  TGCCCGGCAG  161
      ||||| ||||
seq2  TGCCCAGCAG  651