BAC Information

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BAC

Clone NameB6Ng01-235I24
ChromosomeX (Build37)3 (Build37)
Map Location 6,561,952 - 6,562,156130,830,177 - 130,830,456
singlet/doubletsingletsinglet
Overlap geneCcnb3
Upstream geneNudt11, LOC208428, AU022751, Nudt10, Bmp15, Shroom4, LOC100043937, Dgkk
Downstream geneAkap4, Clcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235I24.bB6Ng01-235I24.g
ACCGA047008GA047009
length205988
definitionB6Ng01-235I24.b B6Ng01-235I24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,561,952 - 6,562,156)(130,830,177 - 130,830,456)
sequence
aaagttttcaaagttacttttctctacaatgttttacaaaattgaggaaa
ggatcaagtatgaattctaattataggtatctacaagtgtttggaggctt
tctacctgaaaggtagcgatacaggcatggcctgttatccaaatggacag
atccttgcactagcctacagcctctgggtcagtgtttctcactctgtgtg
tgtgt
gaattcactttgtagaccaggctgggctcaaactcagaaatccgcctacc
tctgcctcccgagtgctgggtttaaaggcgtgcaccaccatgcctggcct
atgatttttctaatgtacagatacttcttggtatatgaagaggataaaat
ctgaataaaattgaaatgttcattctcagccagaatattaactataaaat
attaattggtgaagctacccagtattgagaaagaacacatattttagccc
tgaaaaaagatcaaaattaaaaaccagcaattatgttctagtaaatgtat
attactttttacctatcataaagtatgaaaattaagttgaaatattataa
ttcaggaccatctgtaccttagagaaaacaggaaatatctttggtttttg
ttttgttttttccttaactgtgtcttggcttagtagtattagataagatc
taaaaatgttttccctgtttcctagcttttatttttgaaaataaagtttc
ttcatatagcatattaatttttaaggtgaagtaagtagtaattgttatgt
tttagaggttagagtgaaagatcctggcagaatgtaaaaggacacagaag
ccctgaaattggcaagatagacgtcagtgttagcagaactagcttcactg
atttagaaaaatagaggtgcacaatgctctggccactccttgaacctgtg
tgtctgccaatgttctgaccaggtgtgtgcccattgctgcaccttcatta
gactctttccttgtacccctcccatacccatttcttgagaatagacattg
tttagatctggaagtcccctactctcccccttctcctttcccccctgagg
gcctataaaaactgggaactctttccccttgaggtcgactcctctacccc
tgcttgggatatgagtcgtccccagagctctggctttccccgaataaagc
ctcatgtggtttgcaacaagctcggtctgtcgtgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_6561952_6562156
seq2: B6Ng01-235I24.b_53_257

seq1  AAAGTTTTCAAAGTTACTTTTCTCTACAATGTTTTACAAAATTGAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTCAAAGTTACTTTTCTCTACAATGTTTTACAAAATTGAGGAAA  50

seq1  GGATCAAGTATGAATTCTAATTATAGGTATCTACAAGTGTTTGGAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGTATGAATTCTAATTATAGGTATCTACAAGTGTTTGGAGGCTT  100

seq1  TCTACCTGAAAGGTAGCGATACAGGCATGGCCTGTTATCCAAATGGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGAAAGGTAGCGATACAGGCATGGCCTGTTATCCAAATGGACAG  150

seq1  ATCCTTGCACTAGCCTACAGCCTCTGGGTCAGTGTTTCTCACTCTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCACTAGCCTACAGCCTCTGGGTCAGTGTTTCTCACTCTGTGTG  200

seq1  TGTGT  205
      |||||
seq2  TGTGT  205

seq1: chr3_130830177_130830456
seq2: B6Ng01-235I24.g_70_474

seq1  TCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTG  50
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  TCACTTTGTAGACCAGGCTGGGCTCAAACTCAGAAATCCGCCTACCTCTG  50

seq1  CCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACAGCCTGGC-----  95
      |||||| ||||||||| |||||||||||| ||||||  |||||||     
seq2  CCTCCCGAGTGCTGGGTTTAAAGGCGTGCACCACCA-TGCCTGGCCTATG  99

seq1  -----------TTGCATAT---------TATTTTAA-AGG---AGATCTT  121
                  | || ||         ||| | || |||   | |||| 
seq2  ATTTTTCTAATGTACAGATACTTCTTGGTATATGAAGAGGATAAAATCTG  149

seq1  AAT----------TGTTCACTTGGCCCCCAG--TACTAATACTAAA----  155
      |||          |||||| ||  |  ||||  || |||   ||||    
seq2  AATAAAATTGAAATGTTCA-TTCTCAGCCAGAATATTAACTATAAAATAT  198

seq1  --------CAAGTTA----------------ATCAAATAGCTGTG-CGTG  180
               ||| ||                | || |||  |  | | ||
seq2  TAATTGGTGAAGCTACCCAGTATTGAGAAAGAACACATATTTTAGCCCTG  248

seq1  CGGACAGTTCACAAT---------GCTCGGATTCTTTGGTCAATGAAT--  219
         | || ||| |||         ||    ||  | | || |||| ||  
seq2  AAAAAAGATCAAAATTAAAAACCAGCAATTATGTTCTAGTAAATGTATAT  298

seq1  ---------CCTA------------------------------TAGGAGC  230
               ||||                              ||  |  
seq2  TACTTTTTACCTATCATAAAGTATGAAAATTAAGTTGAAATATTATAATT  348

seq1  CAGG----CCTTTA-CACACAGAACTCTTGCAAAGA---GTGGTTTTTGT  272
      ||||     || || |  | ||||  |  | ||| |    ||||||||||
seq2  CAGGACCATCTGTACCTTAGAGAAAAC-AGGAAATATCTTTGGTTTTTGT  397

seq1  TTTGTTTT  280
      ||||||||
seq2  TTTGTTTT  405