BAC Information

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BAC

Clone NameB6Ng01-236B08
Chromosome3 (Build37)
Map Location 108,361,792 - 108,520,014
singlet/doubletdoublet
Overlap gene2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2
Upstream geneAlx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik
Downstream gene4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236B08.bB6Ng01-236B08.g
ACCGA047390GA047391
length1,2301,028
definitionB6Ng01-236B08.b B6Ng01-236B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,361,792 - 108,362,996)(108,519,000 - 108,520,014)
sequence
gaattcatttgataaacaggacgtaaaaggccattacaatgcaggcaatt
gcaacagcagcatgcagccgggttccaatcacagcagctagaggacaaac
agaaagagacgtcataccaggctcttcacaaaagccttgctgcttccaaa
ccacgttctgaatttctaaagagaaccacaggtttcgagagtctggaaat
gttcttaaagaacacccttatgctctaggctctacatggattgcttaccc
cggccccttttccctttttgagatagaaccacactgtgtagccctggctg
gcttccaatttgtacctagaacaagaatgtccttgaactaagagatctgc
ctgtctgtctgcctctgtctcccagggctgggattaaaggtgtgtgctct
catgcctgtcctccctaacccttttagagacaaaggctcactatgcaata
gaattctagggatgtgtcaccatgccagtccttattttaccctatttaaa
aaatatttatatagaattcctgatgaaggtgcccaaaatataaggtaagg
atccaatgtgttctcttaaaaacaaaaataagtggaaaactattcttcct
gctaagaggagtttcaggccaggctaaaatgatctaacttgtaaaatatc
tccacctcaccccatgagaccaaatattggccaagaacaagctcacttct
tggcttcccaagtagctggaactacaagcatgtgccacacctggcattgt
tatgtgtccattatttaatcctagaacaccaaaattacctagaaagtaaa
acaaaacaagtatgccttaagtaacggctaatttaaaatttacctcttcc
ctcaactttatcttattagcagaccctaagcaaagcactttaccacatga
tttgtgaggacctgagtcaaaatcccagaaatcacgtaaattatggctta
ttgtaatacaaaccttgtgctctcagtacttgtaaggctaaggtaggcag
gacaagttccagaagctcacagcttcagcttagcctagttgtacacaggc
agcatccaccccaattacaacaccaccaccaaacacactcattataagtt
aaacattgagttccaatatccacccttggtcctacgcctttctattctag
aaccacaaaaaatcttagcaggatttttcgaatctgcaatctgttgttaa
gcatatgttcaagggcggaatctataaacg
gaattctacatattattaccttgatttatttttactcctggtggaatttc
tttttaattttgccattgaattactttattaaatttagatttcaaaaaga
agaaagaagattgaaagttcttaaacagcttttagctctaaagatgtgtg
gaaattcaggctgttgagtttgctccctggacctcatggtggaaggaatc
acaatggtaaaagataaaacccaggagcatctctcactccgacctttctt
cctcccagacctttacctggttttcaggtttttgtatgtctagcttgaga
tgctaatgttttagctatcattggtgaatatgtactttgtgacgtgcaag
tttaacaggtgaagacagtccatgtttttcttccgaggtgtagttgtaat
ccagtttgccggttgctgtgggcgccattcctctttccctggtcttggaa
gttctgtcagctcagttcactgtcagccttggcccctggcttacctcgtg
ggccctgtcttcattttcctctgatgacggggtccaggtcacagctgttc
tcaggtttgaccagctctctttgggtactggtttctcacgttagtcctgt
gttctaatgtcgggtttgccatttgttgacttgagcttttttattgattg
accaccataaactcaaacctatgctacctttaggctttgtataccatgcc
ctttgcctttccaggcaaacacgcttcttaggttccccagtatcagcacc
ctactcttgttttgtgggtttttttttttttttttatatcaagagtttga
gattcttttttttttttttttaagattcatttttaaaccatgtgtaatat
gcacatgtctgttgtgtgtgactgcaggggcccgtagaggccttcaggtc
ttcagtcttcctagagccagttgtgacaagtgggttgttagccccctaac
ctgcagcctgggaatcagacttggaatcgttctgcagagtaatacagacc
tccagaagtggctgagccattgctctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108361792_108362996
seq2: B6Ng01-236B08.b_46_1275

seq1  GAATTCATTTGATAAACAGGACGTAAAAGGCCATTACAATGCAGGCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGATAAACAGGACGTAAAAGGCCATTACAATGCAGGCAATT  50

seq1  GCAACAGCAGCATGCAGCCGGGTTCCAATCACAGCAGCTAGAGGACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCAGCATGCAGCCGGGTTCCAATCACAGCAGCTAGAGGACAAAC  100

seq1  AGAAAGAGACGTCATACCAGGCTCTTCACAAAAGCCTTGCTGCTTCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGACGTCATACCAGGCTCTTCACAAAAGCCTTGCTGCTTCCAAA  150

seq1  CCACGTTCTGAATTTCTAAAGAGAACCACAGGTTTCGAGAGTCTGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTCTGAATTTCTAAAGAGAACCACAGGTTTCGAGAGTCTGGAAAT  200

seq1  GTTCTTAAAGAACACCCTTATGCTCTAGGCTCTACATGGATTGCTTACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAAAGAACACCCTTATGCTCTAGGCTCTACATGGATTGCTTACCC  250

seq1  CGGCCCCTTTTCCCTTTTTGAGATAGAACCACACTGTGTAGCCCTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCCTTTTCCCTTTTTGAGATAGAACCACACTGTGTAGCCCTGGCTG  300

seq1  GCTTCCAATTTGTACCTAGAACAAGAATGTCCTTGAACTAAGAGATCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAATTTGTACCTAGAACAAGAATGTCCTTGAACTAAGAGATCTGC  350

seq1  CTGTCTGTCTGCCTCTGTCTCCCAGGGCTGGGATTAAAGGTGTGTGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTGCCTCTGTCTCCCAGGGCTGGGATTAAAGGTGTGTGCTCT  400

seq1  CATGCCTGTCCTCCCTAACCCTTTTAGAGACAAAGGCTCACTATGCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGTCCTCCCTAACCCTTTTAGAGACAAAGGCTCACTATGCAATA  450

seq1  GAATTCTAGGGATGTGTCACCATGCCAGTCCTTATTTTACCCTATTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGATGTGTCACCATGCCAGTCCTTATTTTACCCTATTTAAA  500

seq1  AAATATTTATATAGAATTCCTGATGAAGGTGCCCAAAATATAAGGTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATATAGAATTCCTGATGAAGGTGCCCAAAATATAAGGTAAGG  550

seq1  ATCCAATGTGTTCTCTTAAAAACAAAAATAAGTGGAAAACTATTCTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGTGTTCTCTTAAAAACAAAAATAAGTGGAAAACTATTCTTCCT  600

seq1  GCTAAGAGGAGTTTCAGGCCAGGCTAAAATGATCTAACTTGTAAAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGGAGTTTCAGGCCAGGCTAAAATGATCTAACTTGTAAAATATC  650

seq1  TCCACCTCACCCCATGAGACCAAATATTGGCCAAGAACAAGCTCACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACCCCATGAGACCAAATATTGGCCAAGAACAAGCTCACTTCT  700

seq1  TGGCTTCCCAAGTAGCTGGAACTACAAGCATGTGCCACACCTGGCATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCCAAGTAGCTGGAACTACAAGCATGTGCCACACCTGGCATTGT  750

seq1  TATGTGTCCATTATTTAATCCTAGAACACCAAAATTACCTAGAAAGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCCATTATTTAATCCTAGAACACCAAAATTACCTAGAAAGTAAA  800

seq1  AC-AAACAAGTATGCCTTAAGTAACGGCTAATTTAAAATTTACCTCTTCC  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAGTATGCCTTAAGTAACGGCTAATTTAAAATTTACCTCTTCC  850

seq1  CTCAACTTTATCTTATTAGCAGACCCTAAGCAAAGCAC-TTACCACATGA  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAACTTTATCTTATTAGCAGACCCTAAGCAAAGCACTTTACCACATGA  900

seq1  -TTGTGAGGACCTGAGTCAAAATCCCAGAAATCACGTAAAATATGGC-TA  946
       ||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TTTGTGAGGACCTGAGTCAAAATCCCAGAAATCACGTAAATTATGGCTTA  950

seq1  TTGTAATACAAACC-TGTGCTCTCAGTACTTGT-AGGCTAA-GTAGGCAG  993
      |||||||||||||| |||||||||||||||||| ||||||| ||||||||
seq2  TTGTAATACAAACCTTGTGCTCTCAGTACTTGTAAGGCTAAGGTAGGCAG  1000

seq1  GACAAGTTCCAGAAGCTCACAGC-TCAGC-TAGCCAAG-TGTACACA-GC  1039
      ||||||||||||||||||||||| ||||| ||||| || |||||||| ||
seq2  GACAAGTTCCAGAAGCTCACAGCTTCAGCTTAGCCTAGTTGTACACAGGC  1050

seq1  AGCAACCA-CACAATTACAACA-CACCA-CAAACACACTCA-TATA--GT  1083
      |||| ||| | ||||||||||| ||||| |||||||||||| ||||   |
seq2  AGCATCCACCCCAATTACAACACCACCACCAAACACACTCATTATAAGTT  1100

seq1  AAACA-TGAGTCCAAATAT-CACCC-TGGTCCTACGCC-TTCTATTCTAG  1129
      ||||| ||||| | ||||| ||||| |||||||||||| |||||||||||
seq2  AAACATTGAGTTCCAATATCCACCCTTGGTCCTACGCCTTTCTATTCTAG  1150

seq1  AACCACAAAAATCTTTAGCCAAGA-TTTTCAGATCTGC-ATCTGTTGGTA  1177
      |||||||||||   |||| || || |||||  |||||| ||||||| || 
seq2  AACCACAAAAAATCTTAG-CAGGATTTTTCGAATCTGCAATCTGTT-GTT  1198

seq1  AAGCATATGTTCA--GGCGG-ATC-ATAAACG  1205
      |||||||||||||  ||||| ||| |||||||
seq2  AAGCATATGTTCAAGGGCGGAATCTATAAACG  1230

seq1: chr3_108519000_108520014
seq2: B6Ng01-236B08.g_66_1093 (reverse)

seq1  CTAGAGCAATGGCTCAG-CACTTCTG--AGTCTGTATTACTCTTGCAG-A  46
      ||||||||||||||||| ||||||||   ||||||||||||| ||||| |
seq2  CTAGAGCAATGGCTCAGCCACTTCTGGAGGTCTGTATTACTC-TGCAGAA  49

seq1  CGA-TCCAAGTCTGATTCCCAGCCTGCAGGTTAGGGGGCTTACAA-CCAC  94
      ||| |||||||||||||||||| ||||||||||||||||| |||| ||||
seq2  CGATTCCAAGTCTGATTCCCAGGCTGCAGGTTAGGGGGCTAACAACCCAC  99

seq1  TTGTCAC-ACTGGCTCTAGG-AGACCTGAGACCTG-AGGCCTCTAC-GGC  140
      ||||||| |||||||||||| ||||   ||||||| |||||||||| |||
seq2  TTGTCACAACTGGCTCTAGGAAGACTGAAGACCTGAAGGCCTCTACGGGC  149

seq1  CCCTGCAGTCACACAC-ACAGACATGTGCATA-TACACATGG-TTAAAAA  187
      |||||||||||||||| ||||||||||||||| ||||||||| |||||||
seq2  CCCTGCAGTCACACACAACAGACATGTGCATATTACACATGGTTTAAAAA  199

seq1  TGAATCTTAAAAAAAAAAAAAAAAGAATCTCAAACTCTTGATAT-AAAAA  236
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAATCTTAAAAAAAAAAAAAAAAGAATCTCAAACTCTTGATATAAAAAA  249

seq1  AAAAAAAAAAACCCACAAAACAAGAGTAGGGTGCTGATACTGGGGAACCT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCCACAAAACAAGAGTAGGGTGCTGATACTGGGGAACCT  299

seq1  AAGAAGCGTGTTTGCCTGGAAAGGCAAAGGGCATGGTATACAAAGCCTAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCGTGTTTGCCTGGAAAGGCAAAGGGCATGGTATACAAAGCCTAA  349

seq1  AGGTAGCATAGGTTTGAGTTTATGGTGGTCAATCAATAAAAAAGCTCAAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCATAGGTTTGAGTTTATGGTGGTCAATCAATAAAAAAGCTCAAG  399

seq1  TCAACAAATGGCAAACCCGACATTAGAACACAGGACTAACGTGAGAAACC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAATGGCAAACCCGACATTAGAACACAGGACTAACGTGAGAAACC  449

seq1  AGTACCCAAAGAGAGCTGGTCAAACCTGAGAACAGCTGTGACCTGGACCC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCAAAGAGAGCTGGTCAAACCTGAGAACAGCTGTGACCTGGACCC  499

seq1  CGTCATCAGAGGAAAATGAAGACAGGGCCCACGAGGTAAGCCAGGGGCCA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATCAGAGGAAAATGAAGACAGGGCCCACGAGGTAAGCCAGGGGCCA  549

seq1  AGGCTGACAGTGAACTGAGCTGACAGAACTTCCAAGACCAGGGAAAGAGG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACAGTGAACTGAGCTGACAGAACTTCCAAGACCAGGGAAAGAGG  599

seq1  AATGGCGCCCACAGCAACCGGCAAACTGGATTACAACTACACCTCGGAAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGCCCACAGCAACCGGCAAACTGGATTACAACTACACCTCGGAAG  649

seq1  AAAAACATGGACTGTCTTCACCTGTTAAACTTGCACGTCACAAAGTACAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATGGACTGTCTTCACCTGTTAAACTTGCACGTCACAAAGTACAT  699

seq1  ATTCACCAATGATAGCTAAAACATTAGCATCTCAAGCTAGACATACAAAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCAATGATAGCTAAAACATTAGCATCTCAAGCTAGACATACAAAA  749

seq1  ACCTGAAAACCAGGTAAAGGTCTGGGAGGAAGAAAGGTCGGAGTGAGAGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAACCAGGTAAAGGTCTGGGAGGAAGAAAGGTCGGAGTGAGAGA  799

seq1  TGCTCCTGGGTTTTATCTTTTACCATTGTGATTCCTTCCACCATGAGGTC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGGGTTTTATCTTTTACCATTGTGATTCCTTCCACCATGAGGTC  849

seq1  CAGGGAGCAAACTCAACAGCCTGAATTTCCACACATCTTTAGAGCTAAAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCAAACTCAACAGCCTGAATTTCCACACATCTTTAGAGCTAAAA  899

seq1  GCTGTTTAAGAACTTTCAATCTTCTTTCTTCTTTTTGAAATCTAAATTTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTAAGAACTTTCAATCTTCTTTCTTCTTTTTGAAATCTAAATTTA  949

seq1  ATAAAGTAATTCAATGGCAAAATTAAAAAGAAATTCCACCAGGAGTAAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAATTCAATGGCAAAATTAAAAAGAAATTCCACCAGGAGTAAAA  999

seq1  ATAAATCAAGGTAATAATATGTAGAATTC  1015
      |||||||||||||||||||||||||||||
seq2  ATAAATCAAGGTAATAATATGTAGAATTC  1028