BAC Information

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BAC

Clone NameB6Ng01-236I19
Chromosome3 (Build37)
Map Location 40,627,544 - 40,726,647
singlet/doubletdoublet
Overlap geneMfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Upstream geneLOC100041458, LOC100040882, Intu, Slc25a31, Hspa4l, Plk4
Downstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236I19.bB6Ng01-236I19.g
ACCGA047740GA047741
length1,1631,085
definitionB6Ng01-236I19.b B6Ng01-236I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,627,544 - 40,628,695)(40,725,543 - 40,726,647)
sequence
gaattccagactagccaaggctacatactaagaccctgtcttcgcaaaaa
aaggaaaaacatatgagagaaaacggtaacacatgagaaaaaactgcaac
acaagttactttactagcgcattcatttatattaggcctgtttcatatat
cttttttatttttcaaaaaaaagatttaaagtaaaagtaaaaacatataa
cttactttttggaaagtaatttaacccccatgaagacaagaactgcctca
actccaaaagcaacaaggaggattccatcatagagcacagcctgctcctg
ggtccaggcgtacatatccagtgttagtggggtgaggattctaagaaaag
gagatggtgcttctttaaaaggtagttgttaactaagaattattaataag
gacattaataatacctgtaagaatatgcggccgtttaaatttcagtttaa
ataagaaacacagttacactgcagaaggcttgcaaacagaagacagcata
aataaattacacccctaccctcccatagtgtagcaatgactcatagcgag
gtggtgcttttagctttaagggtgggactctggacgactgaccagcttct
ctagtggtctgcagagggaccactattccctggaaagagcctctacaaag
ggaaattttacattgatacctttttcaaaatcagaaatgtatttcagttt
tgctggaagtgtacggtctagattgtttcccttgttattaaaagtgtgca
tgttaccagcagtgtcacactatctatcacattatgattagcgtttcttt
ccatcagtactacttactgtgtttctttccctccctatgaacacctctgc
cttcatatggctttctccttccttgccaaggctatcgctacactctactg
tcttctgttggctaacaacaaaacaatatatattttaaatgtttcattac
aagaacaatacagtatcctagcctttgaattcagatgagctgatagagaa
agcagatgcatggtttttccaagggctaccacagtttaacattgtaccta
gcattccttctctggttacagaacccagaaccacaagaccagaacttcaa
gcagaaccctttgcacttgcagcatcactcaacacaagcttgcattggtg
cccaacaaagctc
gaattccagaacagccagggctatacagggaaaccctgtctcgaaccact
aacatccctcctgttttgtttttaacaagtttagccattttcactggcac
acaattacactttattttttctcctgagaggaatgtagcttgagctagca
gagaactcatatgtatccctgaaatctgagatcttcctgcctctgcctcc
tacgtgctgaaatttcatttatgtgctactgtgcctgactacaaaagcat
gttttaatccattatttttgagactgggccttgccatgtataccagactg
acctcaaattctagatctacctgccttagtcttagtgctgggattacagg
tatgtggcatgaaacctgactaaattaatttaaatagaaagcaacatacc
tgaaattttctattataaatttttgtttgtttgtttttcgatacagggtt
tctctgtgtagccctggctacagaaatctgcctggctctggctctgcctc
ccagtgctgcgattaaacgtgagcaccatcactgctcagcctattattaa
tttttgatacagggtctattatagctcaggatgtctgaatttctgaccca
ctaacctttgcttcacaggtgctggcattacagaagggccactgtgccct
gcctcaggggaattctcctaaagagaagcctggtctctgcaaccagaggc
ttggtagatagcaggtgttaaactgtaggttggctgaggttctgattcca
aactgctatctcctcacagaactaatgtaagaggcatcaactaaataatc
attacgtgcatttgtgagcattttgacaagatttcattggaccgctgaag
caggagcagggttcccgccaggctgggctccacagtgaagccctgtttca
ataatgtaacaagaacaaaccgtatgctctcctccatcaaaatgatcaca
gtccatttgaaagacccactttctttgttttctgtcttaagtagttttct
atctctcagtacaaatttattttggccttgcatgaaatgacaatctgagt
ctgctctgtacgccgttcctagtagaatacactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40627544_40628695
seq2: B6Ng01-236I19.b_49_1211

seq1  GAATTCCAGACTAGCCAAGGCTACATACTAAGACCCTGTCTTCGCAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTAGCCAAGGCTACATACTAAGACCCTGTCTTCGCAAAAA  50

seq1  AAGGAAAAACATATGAGAGAAAACGGTAACACATGAGAAAAAACTGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAACATATGAGAGAAAACGGTAACACATGAGAAAAAACTGCAAC  100

seq1  ACAAGTTACTTTACTAGCGCATTCATTTATATTAGGCCTGTTTCATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTACTTTACTAGCGCATTCATTTATATTAGGCCTGTTTCATATAT  150

seq1  CTTTTTTATTTTTCAAAAAAAAGATTTAAAGTAAAAGTAAAAACATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATTTTTCAAAAAAAAGATTTAAAGTAAAAGTAAAAACATATAA  200

seq1  CTTACTTTTTGGAAAGTAATTTAACCCCCATGAAGACAAGAACTGCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTTTGGAAAGTAATTTAACCCCCATGAAGACAAGAACTGCCTCA  250

seq1  ACTCCAAAAGCAACAAGGAGGATTCCATCATAGAGCACAGCCTGCTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAAAGCAACAAGGAGGATTCCATCATAGAGCACAGCCTGCTCCTG  300

seq1  GGTCCAGGCGTACATATCCAGTGTTAGTGGGGTGAGGATTCTAAGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGCGTACATATCCAGTGTTAGTGGGGTGAGGATTCTAAGAAAAG  350

seq1  GAGATGGTGCTTCTTTAAAAGGTAGTTGTTAACTAAGAATTATTAATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTGCTTCTTTAAAAGGTAGTTGTTAACTAAGAATTATTAATAAG  400

seq1  GACATTAATAATACCTGTAAGAATATGCGGCCGTTTAAATTTCAGTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAATAATACCTGTAAGAATATGCGGCCGTTTAAATTTCAGTTTAA  450

seq1  ATAAGAAACACAGTTACACTGCAGAAGGCTTGCAAACAGAAGACAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAACACAGTTACACTGCAGAAGGCTTGCAAACAGAAGACAGCATA  500

seq1  AATAAATTACACCCCTACCCTCCCATAGTGTAGCAATGACTCATAGCGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTACACCCCTACCCTCCCATAGTGTAGCAATGACTCATAGCGAG  550

seq1  GTGGTGCTTTTAGCTTTAAGGGTGGGACTCTGGACGACTGACCAGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTTTTAGCTTTAAGGGTGGGACTCTGGACGACTGACCAGCTTCT  600

seq1  CTAGTGGTCTGCAGAGGGACCACTATTCCCTGGAAAGAGCCTCTACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGTCTGCAGAGGGACCACTATTCCCTGGAAAGAGCCTCTACAAAG  650

seq1  GGAAATTTTACATTGATACCTTTTTCAAAATCAGAAATGTATTTCAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTTACATTGATACCTTTTTCAAAATCAGAAATGTATTTCAGTTT  700

seq1  TGCTGGAAGTGTACGGTCTAGATTGTTTCCCTTGTTATTAAAAGTGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAAGTGTACGGTCTAGATTGTTTCCCTTGTTATTAAAAGTGTGCA  750

seq1  TGTTACCAGCAGTGTCACACTATCTATCACATTATGATTAGCGTTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAGCAGTGTCACACTATCTATCACATTATGATTAGCGTTTCTTT  800

seq1  CCATCAGTACTACTTACTGTGTTTCTTTCCCTCCCTATGAACACCTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTACTACTTACTGTGTTTCTTTCCCTCCCTATGAACACCTCTGC  850

seq1  CTTCATATGGCTTTCTCCTTCCTTGCCAAGGCTATCGCTACACTCTACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATGGCTTTCTCCTTCCTTGCCAAGGCTATCGCTACACTCTACTG  900

seq1  TCTTCTGTTGGCTAACAACAAAACAATATATATTTTAAATGTTTCATTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTGGCTAACAACAAAACAATATATATTTTAAATGTTTCATTAC  950

seq1  AAAGAACAATACAGTATCCTAGCCTTTGAATTCAGATGAGCTGATAGAGA  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAGAACAATACAGTATCCTAGCCTTTGAATTCAGATGAGCTGATAGAGA  999

seq1  AAGCAGATGCATGGTTTTTCCAAGGGCTA-CACAG-TTAACA-TGTACCT  1047
      ||||||||||||||||||||||||||||| ||||| |||||| |||||||
seq2  AAGCAGATGCATGGTTTTTCCAAGGGCTACCACAGTTTAACATTGTACCT  1049

seq1  AGCAATTCCTCTCTGG-TACAGAACCCAAGAACACAAGACCAGAAC-TCA  1095
      |||| | | ||||||| |||||||||||  | |||||||||||||| |||
seq2  AGCATTCCTTCTCTGGTTACAGAACCCAGAACCACAAGACCAGAACTTCA  1099

seq1  AGCAGA--CCCTTGCAC-TGCAGCATCACTCAACAC-AGC-TGCA-TGGT  1139
      ||||||  || |||||| |||||||||||||||||| ||| |||| ||||
seq2  AGCAGAACCCTTTGCACTTGCAGCATCACTCAACACAAGCTTGCATTGGT  1149

seq1  G-CCAACAAAGCTC  1152
      | ||||||||||||
seq2  GCCCAACAAAGCTC  1163

seq1: chr3_40725543_40726647
seq2: B6Ng01-236I19.g_68_1152 (reverse)

seq1  CTAGTGTATTCTACTAAGAGAACCGGGCGGTAACAGGAAGCAGAACCTCA  50
      ||||||||||||||||   ||||  ||||   ||||  ||||||  ||||
seq2  CTAGTGTATTCTACTA--GGAAC--GGCG--TACAG--AGCAGA--CTCA  40

seq1  GAATTTGTCATTTCCATGCAAGGCCAAAATAAATTTTGTACTGAGAGATA  100
      ||  ||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  GA--TTGTCATTT-CATGCAAGGCCAAAATAAA-TTTGTACTGAGAGATA  86

seq1  GAAAACTAACTTAAGAACAGAAAACAAAGAAAGTGGGGTCTTTTCAAATG  150
      ||||||| ||||||| |||||||||||||||||| ||||| |||||||||
seq2  GAAAACT-ACTTAAG-ACAGAAAACAAAGAAAGT-GGGTC-TTTCAAATG  132

seq1  GACTGTGATCAATTTTGATGGAGGAGAGCATACGGTTTGTTCTTGTTAAC  200
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  GACTGTGATC-ATTTTGATGGAGGAGAGCATACGGTTTGTTCTTGTT-AC  180

seq1  ATTATTGAAACAGGGCTTCACTGTGGAGCCCAGCCTGGCGGGAACCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGAAACAGGGCTTCACTGTGGAGCCCAGCCTGGCGGGAACCCTGC  230

seq1  TCCTGCTTCAGCGGTCCAATGAAATCTTGTCAAAATGCTCACAAATGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTCAGCGGTCCAATGAAATCTTGTCAAAATGCTCACAAATGCAC  280

seq1  GTAATGATTATTTAGTTGATGCCTCTTACATTAGTTCTGTGAGGAGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATTATTTAGTTGATGCCTCTTACATTAGTTCTGTGAGGAGATAG  330

seq1  CAGTTTGGAATCAGAACCTCAGCCAACCTACAGTTTAACACCTGCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGAATCAGAACCTCAGCCAACCTACAGTTTAACACCTGCTATCT  380

seq1  ACCAAGCCTCTGGTTGCAGAGACCAGGCTTCTCTTTAGGAGAATTCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCTCTGGTTGCAGAGACCAGGCTTCTCTTTAGGAGAATTCCCCT  430

seq1  GAGGCAGGGCACAGTGGCCCTTCTGTAATGCCAGCACCTGTGAAGCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGGCACAGTGGCCCTTCTGTAATGCCAGCACCTGTGAAGCAAAG  480

seq1  GTTAGTGGGTCAGAAATTCAGACATCCTGAGCTATAATAGACCCTGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGGGTCAGAAATTCAGACATCCTGAGCTATAATAGACCCTGTATC  530

seq1  AAAAATTAATAATAGGCTGAGCAGTGATGGTGCTCACGTTTAATCGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAATAATAGGCTGAGCAGTGATGGTGCTCACGTTTAATCGCAGC  580

seq1  ACTGGGAGGCAGAGCCAGAGCCAGGCAGATTTCTGTAGCCAGGGCTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGGCAGAGCCAGAGCCAGGCAGATTTCTGTAGCCAGGGCTACAC  630

seq1  AGAGAAACCCTGTATCGAAAAACAAACAAACAAAAATTTATAATAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTATCGAAAAACAAACAAACAAAAATTTATAATAGAAAA  680

seq1  TTTCAGGTATGTTGCTTTCTATTTAAATTAATTTAGTCAGGTTTCATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTATGTTGCTTTCTATTTAAATTAATTTAGTCAGGTTTCATGCC  730

seq1  ACATACCTGTAATCCCAGCACTAAGACTAAGGCAGGTAGATCTAGAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCTGTAATCCCAGCACTAAGACTAAGGCAGGTAGATCTAGAATTT  780

seq1  GAGGTCAGTCTGGTATACATGGCAAGGCCCAGTCTCAAAAATAATGGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGTCTGGTATACATGGCAAGGCCCAGTCTCAAAAATAATGGATT  830

seq1  AAAACATGCTTTTGTAGTCAGGCACAGTAGCACATAAATGAAATTTCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGCTTTTGTAGTCAGGCACAGTAGCACATAAATGAAATTTCAGC  880

seq1  ACGTAGGAGGCAGAGGCAGGAAGATCTCAGATTTCAGGGATACATATGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGAGGCAGAGGCAGGAAGATCTCAGATTTCAGGGATACATATGAG  930

seq1  TTCTCTGCTAGCTCAAGCTACATTCCTCTCAGGAGAAAAAATAAAGTGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTAGCTCAAGCTACATTCCTCTCAGGAGAAAAAATAAAGTGTA  980

seq1  ATTGTGTGCCAGTGAAAATGGCTAAACTTGTTAAAAACAAAACAGGAGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGCCAGTGAAAATGGCTAAACTTGTTAAAAACAAAACAGGAGGG  1030

seq1  ATGTTAGTGGTTCGAGACAGGGTTTCCCTGTATAGCCCTGGCTGTTCTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTGGTTCGAGACAGGGTTTCCCTGTATAGCCCTGGCTGTTCTGG  1080

seq1  AATTC  1105
      |||||
seq2  AATTC  1085