BAC Information

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BAC

Clone NameB6Ng01-238B02
Chromosome3 (Build37)
Map Location 108,064,421 - 108,190,373
singlet/doubletdoublet
Overlap genePsma5, Sort1, Mybphl, Psrc1
Upstream geneHbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686
Downstream geneCelsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238B02.bB6Ng01-238B02.g
ACCGA048858GA048859
length1,0611,079
definitionB6Ng01-238B02.b B6Ng01-238B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,189,304 - 108,190,373)(108,064,421 - 108,065,520)
sequence
gatgctgtgtgcaccgcagcttggaagcccaggtgatgagaacagaggga
ccagttttacctagtcggtccagggactgcagctttcctgaggggctgcg
ccctgcctcgagcggcactggtggtcctgcctcgagccgcactggtggtt
ggaaggtttgttttctgggaaacagaggcttgatggaaattaacaagaga
tgagttagaacgaagctcagctgacgtcatcagaaagactggatgaaggt
atgtgtttcctgaccaaggtaaaaccatgagccacgtagaaagcaaggca
ttccctccttaacactacgtgaaagtagtgttaacagcagttacagctgt
agtgggggaagatcaagccgtgtcactgcagacattcttctatctaaggt
tctctgtttttgttttgtttctttggtttttgagacaggatctccccata
atagctatggttgtcctggaactcactctgtagaccaggctggtcttgaa
cccagaaatctgcctgcctctgcctcccaagtgctgggatcaaaggcgtg
cgccaccactgcccgactctattttgtttttctttttctcctgagacatg
gttttatatagctaaggctggccttgagcgtcttattctctggtgtctac
cctctgagtgctgagactacagaaatgtgccaccatgctaagcctgacca
tttgtccactctatcttacctctgtgccctatggcgcttggatgcccttt
ctgagttgagagagaatctggagctagggcaccttttccaggtggtagac
tccgcccaatgagtggcactcgggtggcaggcttggggatggctgaaggg
acagggagtcgactggaagacttgacagctgctccctggagcccgggatg
aacattgggagttgctagctgagactgtggaactggtctgacaggattgg
tgggcctgtgacaggagtgtagtcaggtcaggttggagctcagctcctct
cttcctcatcagcctcgcccacatctctgctgctggtctcactgctgtgt
cgggcaccgaa
gaattcatcccgattgattcaagtcacctgctttcatttgttcagtttgg
taaaactttggtcaggtttgggaattgggcagatttgtgggccttggaaa
cagttggtacaccaaaagactgaaaggtttgctgtatacttcttacagtt
tctaatatagtttttattcttttttaattacaggggtgtgaatacttttt
ctcctgaaggaagattatttcaagtggaatatgccattgaggctatcaag
gtatagtagccagtagtatatttttggaaatttcataacagccttacata
gtgctaaaaggagtgttttagccattcttttagaaaatagtctcacattc
ctttaaccaactactgtttttataacaattgtaatttttggaaaattaga
atccaaaattaagtagactgacacctcaattcccctacacagggcatcaa
tccagccttcatagaaccaagggcctctcctcccattgatgcacaacaat
gccatcctctgctacatatgcagctagagccatgtgtactcctttgttga
tggcttagtccctgggagctctggggggactggttggttgatgctcttgt
tcgcttacagtgtttttgtgttatgaaagcagattttgtacatgattgga
ctgtggaccttctggtgtgggccactgcccatcagatgacagcgtttacc
cttccatacaagcaaaatgtctgcaggctttgttgaatgttggtattggg
aaagagagtccccacttaagagttgctttagtagaaaaaattaaacgtag
atgtgaattgtttctgtcttgttcagttgaggattcaggatcctcagtaa
acaatttcaagtgggtagctgaggatgtagcccagtagtagagtgtttgc
ctagcagagagagccctgggtccatctatgccaaattttaaaaatatggc
agttagagaacacggagtttagtttatttttctgggcaatagtttagatt
tcatcatcaatcaatctttctttcttcctttcgtcttctctctccattct
tttcctcttttttttaaattttaggatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108189304_108190373
seq2: B6Ng01-238B02.b_52_1112 (reverse)

seq1  TTCGGTGCCCGGACAACAGCAAGTGAGACCCAGGCAGCAGAGATGTGGGC  50
      |||||||||| ||| ||||| |||||||||   |||||||||||||||||
seq2  TTCGGTGCCC-GAC-ACAGC-AGTGAGACC--AGCAGCAGAGATGTGGGC  45

seq1  GAGGCTGATGAGGGGAAGAGAGGAGCTGAGCTCCACCCTGACCCGACTAC  100
      |||||||||||  |||||||||||||||||||||| ||||||| ||||||
seq2  GAGGCTGATGA--GGAAGAGAGGAGCTGAGCTCCAACCTGACCTGACTAC  93

seq1  ACTCCTGTCCACAGGCCCACCAATTCCTGTCAGACCAGTTCCACAGTCCT  150
      |||||||| |||||||||||||| ||||||||||||||||||||||| ||
seq2  ACTCCTGT-CACAGGCCCACCAA-TCCTGTCAGACCAGTTCCACAGT-CT  140

seq1  CAGCTAGCAACTCCCAATGTTCATCCC-GGCTCCAGGGAGCAGCTGTCAA  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGCTAGCAACTCCCAATGTTCATCCCGGGCTCCAGGGAGCAGCTGTCAA  190

seq1  GTCTTCCAGTCGACTCCCTGTCCCTTCAGCCATCCCCAAGCCTGCCACCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCAGTCGACTCCCTGTCCCTTCAGCCATCCCCAAGCCTGCCACCC  240

seq1  GAGTGCCACTCATTGGGCGGAGTCTACCACCTGGAAAAGGTGCCCTAGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCACTCATTGGGCGGAGTCTACCACCTGGAAAAGGTGCCCTAGCT  290

seq1  CCAGATTCTCTCTCAACTCAGAAAGGGCATCCAAGCGCCATAGGGCACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCTCTCTCAACTCAGAAAGGGCATCCAAGCGCCATAGGGCACAG  340

seq1  AGGTAAGATAGAGTGGACAAATGGTCAGGCTTAGCATGGTGGCACATTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGATAGAGTGGACAAATGGTCAGGCTTAGCATGGTGGCACATTTC  390

seq1  TGTAGTCTCAGCACTCAGAGGGTAGACACCAGAGAATAAGACGCTCAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTCAGCACTCAGAGGGTAGACACCAGAGAATAAGACGCTCAAGG  440

seq1  CCAGCCTTAGCTATATAAAACCATGTCTCAGGAGAAAAAGAAAAACAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTAGCTATATAAAACCATGTCTCAGGAGAAAAAGAAAAACAAAA  490

seq1  TAGAGTCGGGCAGTGGTGGCGCACGCCTTTGATCCCAGCACTTGGGAGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCGGGCAGTGGTGGCGCACGCCTTTGATCCCAGCACTTGGGAGGC  540

seq1  AGAGGCAGGCAGATTTCTGGGTTCAAGACCAGCCTGGTCTACAGAGTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCAGATTTCTGGGTTCAAGACCAGCCTGGTCTACAGAGTGAG  590

seq1  TTCCAGGACAACCATAGCTATTATGGGGAGATCCTGTCTCAAAAACCAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAACCATAGCTATTATGGGGAGATCCTGTCTCAAAAACCAAA  640

seq1  GAAACAAAACAAAAACAGAGAACCTTAGATAGAAGAATGTCTGCAGTGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAACAAAAACAGAGAACCTTAGATAGAAGAATGTCTGCAGTGAC  690

seq1  ACGGCTTGATCTTCCCCCACTACAGCTGTAACTGCTGTTAACACTACTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTTGATCTTCCCCCACTACAGCTGTAACTGCTGTTAACACTACTTT  740

seq1  CACGTAGTGTTAAGGAGGGAATGCCTTGCTTTCTACGTGGCTCATGGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAGTGTTAAGGAGGGAATGCCTTGCTTTCTACGTGGCTCATGGTTT  790

seq1  TACCTTGGTCAGGAAACACATACCTTCATCCAGTCTTTCTGATGACGTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGGTCAGGAAACACATACCTTCATCCAGTCTTTCTGATGACGTCA  840

seq1  GCTGAGCTTCGTTCTAACTCATCTCTTGTTAATTTCCATCAAGCCTCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTTCGTTCTAACTCATCTCTTGTTAATTTCCATCAAGCCTCTGT  890

seq1  TTCCCAGAAAACAAACCTTCCAACCACCAGTGCGGCTCGAGGCAGGACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGAAAACAAACCTTCCAACCACCAGTGCGGCTCGAGGCAGGACCA  940

seq1  CCAGTGCCGCTCGAGGCAGGGCGCAGCCCCTCAGGAAAGCTGCAGTCCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCGCTCGAGGCAGGGCGCAGCCCCTCAGGAAAGCTGCAGTCCCT  990

seq1  GGACCGACTAGGTAAAACTGGTCCCTCTGTTCTCATCACCTGGGCTTCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGACTAGGTAAAACTGGTCCCTCTGTTCTCATCACCTGGGCTTCCA  1040

seq1  AGCTGCGGTGCACACAGCATC  1070
      |||||||||||||||||||||
seq2  AGCTGCGGTGCACACAGCATC  1061

seq1: chr3_108064421_108065520
seq2: B6Ng01-238B02.g_65_1143

seq1  GAATTCATCCCGATTGATTCAAGTCACCTGCTTTCATTTGTTCAGTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCGATTGATTCAAGTCACCTGCTTTCATTTGTTCAGTTTGG  50

seq1  TAAAACTTTGGTCAGGTTTGGGAATTGGGCAGATTTGTGGGCCTTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTTGGTCAGGTTTGGGAATTGGGCAGATTTGTGGGCCTTGGAAA  100

seq1  CAGTTGGTACACCAAAAGACTGAAAGGTTTGCTGTATACTTCTTACAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTACACCAAAAGACTGAAAGGTTTGCTGTATACTTCTTACAGTT  150

seq1  TCTAATATAGTTTTTATTCTTTTTTAATTACAGGGGTGTGAATACTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATAGTTTTTATTCTTTTTTAATTACAGGGGTGTGAATACTTTTT  200

seq1  CTCCTGAAGGAAGATTATTTCAAGTGGAATATGCCATTGAGGCTATCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAGGAAGATTATTTCAAGTGGAATATGCCATTGAGGCTATCAAG  250

seq1  GTATAGTAGCCAGTAGTATATTTTTGGAAATTTCATAACAGCCTTACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTAGCCAGTAGTATATTTTTGGAAATTTCATAACAGCCTTACATA  300

seq1  GTGCTAAAAGGAGTGTTTTAGCCATTCTTTTAGAAAATAGTCTCACATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAAAGGAGTGTTTTAGCCATTCTTTTAGAAAATAGTCTCACATTC  350

seq1  CTTTAACCAACTACTGTTTTTATAACAATTGTAATTTTTGGAAAATTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACCAACTACTGTTTTTATAACAATTGTAATTTTTGGAAAATTAGA  400

seq1  ATCCAAAATTAAGTAGACTGACACCTCAATTCCCCTACACAGGGCATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAATTAAGTAGACTGACACCTCAATTCCCCTACACAGGGCATCAA  450

seq1  TCCAGCCTTCATAGAACCAAGGGCCTCTCCTCCCATTGATGCACAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTTCATAGAACCAAGGGCCTCTCCTCCCATTGATGCACAACAAT  500

seq1  GCCATCCTCTGCTACATATGCAGCTAGAGCCATGTGTACTCCTTTGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTCTGCTACATATGCAGCTAGAGCCATGTGTACTCCTTTGTTGA  550

seq1  TGGCTTAGTCCCTGGGAGCTCTGGGGGGACTGGTTGGTTGATGCTCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGTCCCTGGGAGCTCTGGGGGGACTGGTTGGTTGATGCTCTTGT  600

seq1  TCGCTTACAGTGTTTTTGTGTTATGAAAGCAGATTTTGTACATGATTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTACAGTGTTTTTGTGTTATGAAAGCAGATTTTGTACATGATTGGA  650

seq1  CTGTGGACCTTCTGGTGTGGGCCACTGCCCATCAGATGACAGCGTTTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACCTTCTGGTGTGGGCCACTGCCCATCAGATGACAGCGTTTACC  700

seq1  CTTCCATACAAGCAAAATGTCTGCAGGCTTTGTTGAATGTTGGTATTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATACAAGCAAAATGTCTGCAGGCTTTGTTGAATGTTGGTATTGGG  750

seq1  AAAGAGAGTCCCCACTTAAGAGTTGCTTTAGTAGAAAAAATTAAACGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGTCCCCACTTAAGAGTTGCTTTAGTAGAAAAAATTAAACGTAG  800

seq1  ATGTGAATTGTTTCTGTCTTGTTCAGTTGAGGATTCAGGATCCTCAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATTGTTTCTGTCTTGTTCAGTTGAGGATTCAGGATCCTCAGTAA  850

seq1  ACAATTTCAAGTGGGTAGCTGAGGATGTAGCCCAGTAGTAGAGTGTTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCAAGTGGGTAGCTGAGGATGTAGCCCAGTAGTAGAGTGTTTGC  900

seq1  CTAGCAGAAGAGAAGCCCTGGGTCCAATCTATGCCCAAATTTTAAAAAAT  950
      ||||||| |||| |||||||||||| ||||||| ||||||||| ||||||
seq2  CTAGCAG-AGAG-AGCCCTGGGTCC-ATCTATG-CCAAATTTT-AAAAAT  945

seq1  ATGGCAGTTAGAGAACACGGAAGTTTTAGGTTTAATTTTCTGGGCAATAG  1000
      |||||||||||||||||||| |||||   ||||| |||||||||||||||
seq2  ATGGCAGTTAGAGAACACGG-AGTTT--AGTTTATTTTTCTGGGCAATAG  992

seq1  TTTTAGATTTCCTCTATCTATCTATCTTTCTTTCTTTCTTTCTTTCTTTC  1050
       |||||||||| || ||| ||| ||||||||||||| |||||      ||
seq2  -TTTAGATTTCATC-ATCAATCAATCTTTCTTTCTTCCTTTC-----GTC  1035

seq1  TTCCTCTCT-CATTCTTTTTTCTTTCTTTTTTTTTTAAATTTTTAGGATA  1099
      || |||||| |||||||     || || ||||||||||| ||||||||||
seq2  TT-CTCTCTCCATTCTT-----TTCCTCTTTTTTTTAAA-TTTTAGGATA  1078

seq1  T  1100
      |
seq2  T  1079