BAC Information

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BAC

Clone NameB6Ng01-242G06
Chromosome3 (Build37)
Map Location 90,037,914 - 90,169,788
singlet/doubletdoublet
Overlap geneJtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b
Upstream geneTrim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13
Downstream geneSlc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242G06.bB6Ng01-242G06.g
ACCGA052048GA052049
length792939
definitionB6Ng01-242G06.b B6Ng01-242G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,037,914 - 90,038,703)(90,168,849 - 90,169,788)
sequence
gaattcaaaaggtaagagttgtttctctaccctgtggtaacctcttctga
tcctattaggaagctatctcccagtcttggtgtagtttggcagaggagga
gaggggagccagattacccctagttcctaaccccggtcttcagcactatg
ttattggttatattctctgatcaaataatttggtcaggacatggggaatg
tagcccattagtaaagtgctagggtgggttattccttgactcccagctct
caggaggcagaagcaggctgagatcaacaccagcctggtctatgtagggg
aggagtttagtgggtcaaggctatatcataagtacctattctcaagtaag
caggcagcaaagccaggtgtgataacacacatctttgatctcagcactct
cagaaggcagaggcagacatatttctttcttttttttttttttttaagat
ttatttattattatatgtaagtcatctcgttacggatggttgtaagccac
catgtggttgctgggatttgaactctggacctttggaagagcagtcgggt
gctcttacccactgagccatctcaccagccccggcagacatatttctaag
agagcctgattagatgcttcagtgattgaaggcacttagcactattgcag
agaaccctgtttcagtttctcagcacctacaaagttggtctgactccatt
cccaaggtatctgccagcaccctcttttggcctccttgggcatttaagca
cacatatggatgctagaagtatagaactcatttcagcaagtt
gaattctttcccattactagttacaaattatactaggagaaactgaggca
gaggagccagttgtctttgagtcttaaacttgcacaagacctgctgggct
acaagagcaagaggagatgattataagctcttagggcataggatgaggta
gatgtgagcctgagccaatccagcatggagaaacgggtggactgtcttct
ccacacccagagaggggtaggaactgaggctaaggcagggtgcagcaata
ctccaaactaggtgccacagaagacaggctcagagcagaaggaagccaat
gaagaaaactgaactcatcactcgagtgagcaactcacgatggagagctg
gtgagtgtgcttaaggcctggccagggaggcctgaacctcagaggggagg
aagacagaaatggagactgcaagggctgtcaccactcgtctcaccatcac
aatgtcaagtgggcacggctcagctagagctcaagtttttttttttaaat
acttatttattattatacataagtacactgtagctgtcttcagacacact
acaagagggtgtcaggtctcattatggatggttgtgagccaccatgtggt
tgctgggaattgaactcaggaccttcagaagagcagtcagtactcttact
gctgagccacctctccagccaaccctgagctcattttttgctcctctccc
ccaacaccaaacattgagcttcaagatagaagattctcaagcactggttc
tttttcagagaacatcaccccaacaccatctgatctctagatcttgtttt
aagcatttatgcatacaggtgtttggccagtgggtggcgcatgcctataa
tccagcactagggaagttagaggcaggacgatctctgattcaaggttggc
cttgtctacagagtaagttcgaaccagccagtgccacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90037914_90038703
seq2: B6Ng01-242G06.b_45_836

seq1  GAATTCAAAAGGTAAGAGTTGTTTCTCTACCCTGTGGTAACCTCTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGTAAGAGTTGTTTCTCTACCCTGTGGTAACCTCTTCTGA  50

seq1  TCCTATTAGGAAGCTATCTCCCAGTCTTGGTGTAGTTTGGCAGAGGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTAGGAAGCTATCTCCCAGTCTTGGTGTAGTTTGGCAGAGGAGGA  100

seq1  GAGGGGAGCCAGATTACCCCTAGTTCCTAACCCCGGTCTTCAGCACTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGCCAGATTACCCCTAGTTCCTAACCCCGGTCTTCAGCACTATG  150

seq1  TTATTGGTTATATTCTCTGATCAAATAATTTGGTCAGGACATGGGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTTATATTCTCTGATCAAATAATTTGGTCAGGACATGGGGAATG  200

seq1  TAGCCCATTAGTAAAGTGCTAGGGTGGGTTATTCCTTGACTCCCAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCATTAGTAAAGTGCTAGGGTGGGTTATTCCTTGACTCCCAGCTCT  250

seq1  CAGGAGGCAGAAGCAGGCTGAGATCAACACCAGCCTGGTCTATGTAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAGAAGCAGGCTGAGATCAACACCAGCCTGGTCTATGTAGGGG  300

seq1  AGGAGTTTAGTGGGTCAAGGCTATATCATAAGTACCTATTCTCAAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTAGTGGGTCAAGGCTATATCATAAGTACCTATTCTCAAGTAAG  350

seq1  CAGGCAGCAAAGCCAGGTGTGATAACACACATCTTTGATCTCAGCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCAAAGCCAGGTGTGATAACACACATCTTTGATCTCAGCACTCT  400

seq1  CAGAAGGCAGAGGCAGACATATTTCTTTCTTTTTTTTTTTTTTTTAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCAGAGGCAGACATATTTCTTTCTTTTTTTTTTTTTTTTAAGAT  450

seq1  TTATTTATTATTATATGTAAGTCATCTCGTTACGGATGGTTGTAAGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTATTATATGTAAGTCATCTCGTTACGGATGGTTGTAAGCCAC  500

seq1  CATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGT  550

seq1  GCTCTTACCCACTGAGCCATCTCACCAGCCCCGGCAGACATATTTCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACCCACTGAGCCATCTCACCAGCCCCGGCAGACATATTTCTAAG  600

seq1  AGAGCCTGATTAGATGCTTCAGTGATTGAAGGCACTTAGCACTATTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGATTAGATGCTTCAGTGATTGAAGGCACTTAGCACTATTGCAG  650

seq1  AGAACCCTGTTTCAG-TTCTCAGCACCTACAAAGTTGGTCTGACTCCAGT  699
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  AGAACCCTGTTTCAGTTTCTCAGCACCTACAAAGTTGGTCTGACTCCATT  700

seq1  TCCCAGGTATCTGCCAGCACCCTCTTTTGGCCTCCTTGGGCA-TTAAGCA  748
       || |||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCAAGGTATCTGCCAGCACCCTCTTTTGGCCTCCTTGGGCATTTAAGCA  750

seq1  CACATATGGATGCTAGAAGTATAGAACTCATTTCAGCAAGTT  790
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGGATGCTAGAAGTATAGAACTCATTTCAGCAAGTT  792

seq1: chr3_90168849_90169788
seq2: B6Ng01-242G06.g_66_1004 (reverse)

seq1  TTGTGGCCCTGGCTGTTCTGGAACTAACTCTGTAGACAAAGCCAACCTTG  50
      ||||||| ||||||| | | ||||| ||||||||||||| ||||||||||
seq2  TTGTGGCACTGGCTGGT-TCGAACTTACTCTGTAGACAAGGCCAACCTTG  49

seq1  AATTCAGAGATCTGCCTGCCTCT-ACCTCCCTAGTGCTGGGATTATAGGC  99
      || |||||||||  ||||||||| || ||||||||||| |||||||||||
seq2  AA-TCAGAGATCGTCCTGCCTCTAACTTCCCTAGTGCT-GGATTATAGGC  97

seq1  ATGCGCCA-CCACTGGCCAAACACCTGTATGCATAAATGCTTAAAACAAG  148
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCCACCCACTGGCCAAACACCTGTATGCATAAATGCTTAAAACAAG  147

seq1  ATCTAGAGATCAGATGGTGTTGGGGTGATGTTCTCTGAAAAAGAACCAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGATCAGATGGTGTTGGGGTGATGTTCTCTGAAAAAGAACCAGT  197

seq1  GCTTGAGAATCTTCTATCTTGAAGCTCAATGTTTGGTGTTGGGGGAGAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGAATCTTCTATCTTGAAGCTCAATGTTTGGTGTTGGGGGAGAGG  247

seq1  AGCAAAAAATGAGCTCAGGGTTGGCTGGAGAGGTGGCTCAGCAGTAAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAATGAGCTCAGGGTTGGCTGGAGAGGTGGCTCAGCAGTAAGAG  297

seq1  TACTGACTGCTCTTCTGAAGGTCCTGAGTTCAATTCCCAGCAACCACATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTGCTCTTCTGAAGGTCCTGAGTTCAATTCCCAGCAACCACATG  347

seq1  GTGGCTCACAACCATCCATAATGAGACCTGACACCCTCTTGTAGTGTGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAACCATCCATAATGAGACCTGACACCCTCTTGTAGTGTGTC  397

seq1  TGAAGACAGCTACAGTGTACTTATGTATAATAATAAATAAGTATTTAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCTACAGTGTACTTATGTATAATAATAAATAAGTATTTAAAA  447

seq1  AAAAAAACTTGAGCTCTAGCTGAGCCGTGCCCACTTGACATTGTGATGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTTGAGCTCTAGCTGAGCCGTGCCCACTTGACATTGTGATGGT  497

seq1  GAGACGAGTGGTGACAGCCCTTGCAGTCTCCATTTCTGTCTTCCTCCCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGAGTGGTGACAGCCCTTGCAGTCTCCATTTCTGTCTTCCTCCCCT  547

seq1  CTGAGGTTCAGGCCTCCCTGGCCAGGCCTTAAGCACACTCACCAGCTCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTCAGGCCTCCCTGGCCAGGCCTTAAGCACACTCACCAGCTCTC  597

seq1  CATCGTGAGTTGCTCACTCGAGTGATGAGTTCAGTTTTCTTCATTGGCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGAGTTGCTCACTCGAGTGATGAGTTCAGTTTTCTTCATTGGCTT  647

seq1  CCTTCTGCTCTGAGCCTGTCTTCTGTGGCACCTAGTTTGGAGTATTGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCTCTGAGCCTGTCTTCTGTGGCACCTAGTTTGGAGTATTGCTG  697

seq1  CACCCTGCCTTAGCCTCAGTTCCTACCCCTCTCTGGGTGTGGAGAAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCCTTAGCCTCAGTTCCTACCCCTCTCTGGGTGTGGAGAAGACA  747

seq1  GTCCACCCGTTTCTCCATGCTGGATTGGCTCAGGCTCACATCTACCTCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCCGTTTCTCCATGCTGGATTGGCTCAGGCTCACATCTACCTCAT  797

seq1  CCTATGCCCTAAGAGCTTATAATCATCTCCTCTTGCTCTTGTAGCCCAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCCCTAAGAGCTTATAATCATCTCCTCTTGCTCTTGTAGCCCAGC  847

seq1  AGGTCTTGTGCAAGTTTAAGACTCAAAGACAACTGGCTCCTCTGCCTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTGTGCAAGTTTAAGACTCAAAGACAACTGGCTCCTCTGCCTCAG  897

seq1  TTTCTCCTAGTATAATTTGTAACTAGTAATGGGAAAGAATTC  940
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTAGTATAATTTGTAACTAGTAATGGGAAAGAATTC  939